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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0185900 |
| Transcript ID | LotjaGi4g1v0185900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|K7KPK5|K7KPK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0185900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:41635585..41638687) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTTCTTCTTATCCTGACCTTGGCAAACAACATCACCACCTCTATTCTTCTTCTCCTTCTACTACTCTATTCTTCTTC CAGGTAAACTAACCTTCTCTGTCTCTTCATTTTTAATTATTTGGAAATCATGTTCTAGAGCAAACAACAAAATACCACAT CCCAGAAAAATATTTATGTATAAGAAAATGTTTATTGATTTTGGACATACCCACAATGAAGACATATACAAACATCTAGA GTGAGTAACAAAGATAAAAGGGAAAAGTAATAAATGCAGTATATGATAGCACGGGTGTCTATTCGATATATGTATTGTTG GCGTTGTTTGTATGTCGGAATGTCATTAGTTATATGTATATATATCTAACCATTTGATAGTTTGAAGTGATTGAATCATT TCTTTTAATGTAAGATTCTTTTCCTATTTTTGGAAATCAATGAGTTTTTGGTTCCTTCATCAATTGTTCTGATTGAAGTA TGATGACTCCTTTTCAGTGTATCATATATCCATACCATTTATTCCAATTAATTTCTAAGGAGGCAAGCTGAAGATGATGC AGATTTCATCCACCAATTACTTGCCTGAACTTGTAAGCATCAAACAAATTGCAGAATACTCATACATAGATAGAACTAGA TGTGCATGTTGAAATTATCTGAACTCTTCTTGTTGAAATTAACAGGGAATGGAGGAGCCAACTTACTTTCATCAATTCCC AATGGATTCATCATATGCAGAATTCCAAGATCTTGAGTTTGAGTCCTTCACCGCTTCCCCAGATGAGAGCTATTCCTCTG GCAATAAGCGCTTCAATTCTGAAAGTCCTGATTACTCTTTTGCCCCTGCAAGACCAACCAAGCAGCCCAAGACTGAGACT ACTTGGAGTGCATATGGCACAGATTTGATAGCTTCCAAGGCTTCTTCTTCTTCTTCATCACCCAAAATCATTTCTTTTGA GCACTCCAATGTATCTTCAGTAACTTCTTCGCAACCTTTCCACAACATGGGTGCAGCAAACGTGGTGAAGCCTAAAATGG AATCCGGGTTTGGTGAAAACTTGGATTTTGCAGCTGTGATTTCTCAAGGTGCATATGATGACAAAAGTTTCCTATACAAT GAAAACAAGCTGGCTGCCACAGCAACGATCAGAAACCAAGTTCAAGCTCGAGATCACGTACTAGCCGAAAGAAAACGAAG GGAGAAACTCAGCCAGAGATTCATTGCTCTTTCCGCTGTCCTTCCAGGACTCAAGAAGGTACCAAATTACCATTTGTGTT ATATTTTATGCATCCCCCATTAAATTCCTCTAGGTAATTGGTTAGAAGTCACACTTTGACTAGAGATTTGACTAGAATTG CCCATATAAAGGAAGATCAATCCTCACCTTTGAGCTAGTTTTTATGGTAGAGTTAACCCTAATTTAAATTACTATGTTAT CAAAGTTATTATAAGTCCGTTTATCAGAAATTACCCATATGTGGATCTTCCACAAATTTTCATTCCACACTCTAGAGGTT CAGCTGTGTATGAGGGCACCCTTGAACCAACTTTTAGCCTCTACATTTAGCCTTAAACCCAAGTTATAATAGTAAGTAAC CAAAAAAAAGTTATAATAGTAACATTCATATATATGATTCAATTTATGAACATACACATAATGGGGTTGTTTAACTTACA TTCATATTTGTATCATGTTCATCATGTCATTATGTAAATTAATTAGTAATATTCTTCAGTACAAGTTGAATAATCGATGT TTTGCATGCAGATGGACAAGGCCACGGTTTTGGAAGATGCAATTAGCTATCTGAAACAACTAAAAGAACAGGTGAAAACT CTAGAAGAACAAGTTGCCGATAAAACTGTTGAAACAGCAATCTTTCTGAAGAGATCTGTTGTCTTTGGTGATGATGATGG CTCCTTCTCTGATGAAAACTCCGATCAATCACTCCCTGAAATCGAAGCGAGAGTTTCTGGGAAAGACATACTCATCAGAA TCCACTGCGAGAAACACCATGGGAAAGCAGTGTCTGCAATACTTGTGGAATTAGAAAAGCACCATCTCACAGTTCAAAGT ACCAGCATTTTGCCCTTTGGAAATAACACTCTTGACATAACCATTGTTACTCAGGTAAATATATTAATTAACTTAGTGAT ATTTCCTTGTTATAGAACAATTATCTATTCCATCAAGATAGGAATCATTGGAAAATTTAAGTAAAATCATGCAATTAATA GTACTACTCTAGGGCAATGATACATGTTAGAATTCGATTTATGTAACTCTACAAAAAAGTTAGCTCAGAGACGAGAATTG TGCGTTCTAGGCCTATATAAGTATTACTTTGGTTAGGCCTTTAATCAATGTAGGATACCATAAGGAATACGGTGCTTGAA TTATAGGCCATGTTCCGATACACATTGAGCAATCACGGTGAGCTAAGATCACGCCGTACAAAAATAACTTCCTTTAGGTT TTGTGACTATTCACTGTGATTTTTCATTGTATATACAAAATGAACAAAAACAACTAAGTTTCTGTCCACTTTTCACATAT TCATTATACGTTGTTTTTGTTTATCTTTGCAGATGAAGAAAGAATACAATCTCACAACAAAGGAGCTCATAAAAAGCTTA AGTCAATCTTTGAAGCAGTGTGCATGAAAAGAAATTAACTTCAGTTAACAGTGACATTAATTTTTCACAGCACATTGGTT CCCCTTTTTTATCCATCATTTGGATTCGTCTATCACCTCCCAGAAATAATGCAGAAGTGTATGTTGTTAATTTTTTGCGC AGTTGACTATAAAGCTGCGTTAATCTGCCCAGAAATGGCATTTTCAAATCTATGCTGACTACAGCTATTTTGTTTTATCC AAAGAGGGTTTTTTGAGAGATTTAGACAGATCTTTTTCCACCCTCATTGTCGTTGTGAAAAAGGGTGTAGTTTGATGACA ATGTTGATTGTTGAGTGTATTTATATTGCAATTTAATATTGGTCCCGATGTTAGATGGGTATGAAGTTCTTGATTATGAT CTTTGTTCTGACTAGACGACAACTTGTTAATTTCTTTCAAATATTATAGATGTTCATGGATGC
CDS sequence (LotjaGi4g1v0185900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAGATTTCATCCACCAATTACTTGCCTGAACTTGGAATGGAGGAGCCAACTTACTTTCATCAATTCCCAATGGA TTCATCATATGCAGAATTCCAAGATCTTGAGTTTGAGTCCTTCACCGCTTCCCCAGATGAGAGCTATTCCTCTGGCAATA AGCGCTTCAATTCTGAAAGTCCTGATTACTCTTTTGCCCCTGCAAGACCAACCAAGCAGCCCAAGACTGAGACTACTTGG AGTGCATATGGCACAGATTTGATAGCTTCCAAGGCTTCTTCTTCTTCTTCATCACCCAAAATCATTTCTTTTGAGCACTC CAATGTATCTTCAGTAACTTCTTCGCAACCTTTCCACAACATGGGTGCAGCAAACGTGGTGAAGCCTAAAATGGAATCCG GGTTTGGTGAAAACTTGGATTTTGCAGCTGTGATTTCTCAAGGTGCATATGATGACAAAAGTTTCCTATACAATGAAAAC AAGCTGGCTGCCACAGCAACGATCAGAAACCAAGTTCAAGCTCGAGATCACGTACTAGCCGAAAGAAAACGAAGGGAGAA ACTCAGCCAGAGATTCATTGCTCTTTCCGCTGTCCTTCCAGGACTCAAGAAGATGGACAAGGCCACGGTTTTGGAAGATG CAATTAGCTATCTGAAACAACTAAAAGAACAGGTGAAAACTCTAGAAGAACAAGTTGCCGATAAAACTGTTGAAACAGCA ATCTTTCTGAAGAGATCTGTTGTCTTTGGTGATGATGATGGCTCCTTCTCTGATGAAAACTCCGATCAATCACTCCCTGA AATCGAAGCGAGAGTTTCTGGGAAAGACATACTCATCAGAATCCACTGCGAGAAACACCATGGGAAAGCAGTGTCTGCAA TACTTGTGGAATTAGAAAAGCACCATCTCACAGTTCAAAGTACCAGCATTTTGCCCTTTGGAAATAACACTCTTGACATA ACCATTGTTACTCAGATGAAGAAAGAATACAATCTCACAACAAAGGAGCTCATAAAAAGCTTAAGTCAATCTTTGAAGCA GTGTGCATGA
Protein sequence (LotjaGi4g1v0185900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQISSTNYLPELGMEEPTYFHQFPMDSSYAEFQDLEFESFTASPDESYSSGNKRFNSESPDYSFAPARPTKQPKTETTW SAYGTDLIASKASSSSSSPKIISFEHSNVSSVTSSQPFHNMGAANVVKPKMESGFGENLDFAAVISQGAYDDKSFLYNEN KLAATATIRNQVQARDHVLAERKRREKLSQRFIALSAVLPGLKKMDKATVLEDAISYLKQLKEQVKTLEEQVADKTVETA IFLKRSVVFGDDDGSFSDENSDQSLPEIEARVSGKDILIRIHCEKHHGKAVSAILVELEKHHLTVQSTSILPFGNNTLDI TIVTQMKKEYNLTTKELIKSLSQSLKQCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 347 | 346 | 1.7E-146 | – | |
| PANTHER | 2 | 347 | 346 | 1.7E-146 | – | |
| MobiDBLite | 43 | 60 | 18 | - | – | |
| MobiDBLite | 43 | 78 | 36 | - | – | |
| Gene3D | 169 | 234 | 66 | 1.1E-15 | ||
| ProSiteProfiles | 172 | 221 | 50 | 15.758 | ||
| Pfam | 177 | 222 | 46 | 1.8E-9 | ||
| CDD | 177 | 226 | 50 | 4.81794E-14 | ||
| SUPERFAMILY | 177 | 239 | 63 | 1.7E-16 | ||
| SMART | 178 | 227 | 50 | 4.3E-15 | ||
| Coils | 211 | 238 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0185900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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