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LotjaGi4g1v0187900.1

Overview

Field Value
Gene ID LotjaGi4g1v0187900
Transcript ID LotjaGi4g1v0187900.1
Lotus japonicus genome version Gifu v1.2
Description Eyes absent; TAIR: AT2G35320.1 eyes absent-like protein; Swiss-Prot: sp|O95677|EYA4_HUMAN Eyes absent homolog 4; TrEMBL-Plants: tr|A0A0B2P1X9|A0A0B2P1X9_GLYSO Eyes absent like 4; Found in the gene: LotjaGi4g1v0187900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:42820442..42825762) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGTAAGTGGGCTTCTCATTAGGGCGAAAAAAAGAAAAAGGAACAAAAATTGCATTGGTAGTTGAATGTGATGGTCTT ACTCTTACTCACATCACAACTTCATCGTTCTCCTTCGCTCTGCAAGGCAACCGTAATCTAAGGTAACCAGCTTCCTTTGT CGTTCACTTTTTTCTCCGCATACATGTTTTGATTTTCGCCTTTGTCATTTACCTGTTTTTATTATTCTTTTACAGTTTAC ACGCTGATTCGAATCTTGCCGGTTTTGATTTTTAGGATTAATGTTACCATGCTCATCCTTTTAGCTACAATTTCTGAAAA TTCTTCATGAACTCATGCTTTTTATAATACCAGTGATTGCTTTTTCTATTCTTTTAGTATTTGGTTATTTAAAAATAATT CTATTGATTTCAATTGGGGTTGCGTATGTTTATTTAGCAACTCAGTGAGTGTGATCAAAGCTAAATAAGCCTGTTCTCGT TTGTTGTGAATCCTGATCGTCTAATGTTTTAGCTTGTTAAGTGGGAATTCTTTGGAGTAATTGATGCATTGTATCCTTGT GCACTAATCATTATGTCAATATGCACTGATTAAGGTTTGGCGCAAGGTTTTAAATTGAGGTCCACAACTAAAGGGTTTTT GTTTCTCCGCAACGGAATCACAACCGCAGTTGTAGCGGTATCAAATTCAACCCATATTTGTCTGCAATTCTGCGACATAA CCGTAACCGCAATTTAAAATCTTGGTTTAGTGTAACCTTTGCACTAAATTTACCTACAAGGTGTTGGCCTAGTGGTAAGC AAGCTAGACCCTGTAAGGATGAGAACACAAGTTCGAATCCCGAGAAAGACATTTGTTAAGAAGGACATGCAACTGTATCC TGAACGGGTGGCGACATCCGTCAAGGACCCAAAAAAAAAACTTTGCACTGAATTTATGAAGTTTTTGCTGCAGTGAGCTG TTAGGTGAATTGTGATCATTGAGCTCATTCGATAATGGCTGCTTCATCTGGGAGGCCTGAGCAGGATACCAGCAACAACA CACATCCCAGGCTGGATGTCTATGTGTGGGACATGGATGAGACCCTAGTACTCCTCAACTCCTTGCTGAAATCATCCTAT GCCGAGGCTTTCAACGGTCTGAAGGATGTCCAGAAGGGCGTCGAGCTCGGGAGGATGTGGGAAAATCTCATTCTACAATT ATGTGATGATTATTTCTTCTATGAACAAGTAAAATTTGGCATTTATGTGGGAGTATCAGTGGCTTTGTTTTACTTGTAGA ATGTTAGTAATTTGATGTGGGGTTCATTGCCGCAGATTGAAGATTACAATAAGCCGTTTCTTGATGCTCTGACCCAATTT GACGACGGGAGGGATCTGTCGGATTATGACTTCAACCAAGATGAATTAGGTGCCCCAAATGATGATGACAACAAAAGAAA ACTTGCTTATAGGCATCGAATTATAGCCCAAAAATATGTACAGGTAAATCTTCTGGAGCATGATTGGTGTTTCCGAATAT AAATTTTGAAGGTCATTACTATAACATGGGATTTTACTTGTTATGGTATTATTGAGTATATTCGTAATGTCATTTAGTGT TGCACCCTCCCTTCATTTTATCTTATGTTAAAAACAGGAAAATTTTAAATTAATTCATCAAGGGATAGCAAGCTAAGGAA AATGAGTGCTAGATCTTTTAAGAATTGATTAAGGATCCATCTTGAAGATAAACAGAAAGACTGAACATTTATAAACACTT GGCTGCTGCTGTAAAGAAATATTCAAATTCCTATGTTTGCATATCACTAATGGTAAAAACAAGCTTTCAAGTTTCAACAA ATCAGTGGTTATAGTATACAATGAAGTAGATTATTGTTTTGAAACAACTCCATGAGACTTAATTTATAGGTGAGAGATTG TAATTTATTTTCTATAGACTGTAGTTTGATAGACATTGTGACATGAGAAGTTAGATACTTAGGATGCTAGTATAACCAAA TTTATAGGCTTAAATAAGTTTTTGGTCCCTAACCTTTACCAAATGCTTGGTTTTCGTCCTTCGCCGGAGTAAAGGTGGGT TTTAGTCCCTAACCTTTGTCAAAAGATTTGGTTTTGGTCCCTCCGGAGCTCTGGGTCAACGCCGGAGCTCCGGTGGCCCA TGTGGCATTGCCACATGGGATTAATGAGGCCAGGTGTTATTTATTTATTTTAAAAAAAAAAGAAAATTAACTCACTAATT AAAACCTCAATTAACCTAAACTAATCCCTCACCACAATGCACTAATTAACCTCATTTTTAATTAATTAAAACCCTCACCC AGATTTCTTCTTCATCATCAACACCATCATCCTTCCTCATCTTCTTCACCTTTACGCTCCCAAACCCAGAAATTTACAGA CACTCCATCTCCAACCCCTTCTTCACCATTGATTCTTTTTTACAGAGGAAATAGTGCAGCAGCTATGCAAAGGCTACAAA CTATACAAGGTGCTATCCCAGTAGCAAAAATGAAGCGGAGGGAAGAAACAGAGCTGTAAAATCCCTACAAGCTACTAAAG CAATCCAAGAAAACACAAAGAGAGCAGATGCGGCTTCTGTCAAAAATCAGCAGAAGAGGTTTTGCAATCTTGGACAGTTC AGTACCAAACTGTGAACATTCCATTCAATTAATCACAAAGAACAATCAGCCTTAGCAAAAATACCTCTATTGCATTCACG GTGGAATTCACAAGTGTTGGCAGTGCTCTGGTTCCATTTCTAACACAAATACCCCCAACTCATTTATTCTACAGTATTCT TTTTCAGCCTCACCAGTCACTGGATCTAGCATAACAATGTAATTCTTCACAACCAAGCCCCCATTCTCTGAAATAACAGC AGCAGCACGAGATGTTTGAGCCGCTTCACTTTCTTCAAATCGAATGAATCCTGATTCTGCTCCCATCGTGAAATCAATGT TCAAACCCATTTTCTCTTCTCCACCCACAAAACCCACATTCTCCACCCAGATCTGCCAGAGCACGAAAACGCAGTTCTGC CAGAGCTTGAATGAAGTGTTCACGCTTCAAGGTTGAAGACGAAAACGAAGATTATTCAGAGTTTGGGTGGTGGTCGTATA TCTGGGAAATTTGGGTTCTTAGGGGTAGTGGGTTGTGGGTTTTGAGGTGGATCCAGAACGGCGAACAGAGAGACAGTGTG CGGTGCGGGCCAGACGGGGAGATGAGATCATGCGCTTGAAGAAGAAGAAGAAGAAGAGATGATGAATCCTGAGATGAAGA TGATGAATCCTGAGTTTTTCTTTGCAGATCTGGGTTAGGTTAATTAGTGTTTTTATTTTTTATTTTTTTAAATGAAAAAG AAATAAAAAAATCCACCTCAGCTCATTAAATGACGTGGCCATGCCACATGAGCTTCCCGGAGCTCCGGCGTTGACCCAGA GCTCCGGAGGGACCAAAACCAAATCTTTTGACAAAGGTTAGGGACTAAAACCCACCTTTACTCCGGCGAGGGACGAAAAC CAAGCATTTGGTAAAGGTTAGGGACCAAAAACTTATTTAAGCCTTTATTTTATCATCAGCTTCTTGATTTAGGGATAAAC TTGACCTTCTATGCTCATGTTTCAGGGTTTGCATAATATTTTAGATCACGAGGCAATAAAATTCTGGAATGAATTATATG ATAAAACTGATGAATATACTGACAAATGGCTTTCATCAGGTATGTTTTGACTGTTCATTGATTTTATCTTTTGTTGTGTG CCCTGCTTTATTTACATGTTTCTTATTTAATTTATTGTAGCACGGGCCTTCTTGAAGGAGTGTTCAGGTGAAAATAACGA TGCAGTTTCTTCTCTTGCTTTTGTTAACACAAGCAATGATTCCAATAATGCAAACCCTCAACATATAAATGTTTTAGTGA CATCTGGATCGTTGATACCCTCTCTTGTAAAATGCTTGCTCTTTCACCTGGACAGCTTAATACCACATGCAAATGGTGGG TAATTGTTTCTCATCTGAATACTACAAGTTTTAAGTCGCAGAATAGATTTATCATGCCAAACATAGTTTATAGTTATCTT TTTAAAAGCTTAAAACTAGTAATGATTTTAGTATGAACTGGAGAATTTAGTCCTGATCTTTAGTCATTGTGACTTGCCAT TGTAAATGATGTGTTGTCTCATTTCAGTTTATAGCTCATGGGAAGTGGGAAAAGTTCAATGTTTCCGATGGATCAAGGAG CGTTTCAACCACCCCAATGTTCGCTTTTGTGCAATTGGAGATGGATGGGAAGAGTGTGAAGCGGCTAAAACCATGAGATG GCCTTATGTTAAGATTGACCCAAGGCCAGATAAACTTCACAGGTTCCCTGGTCTCACACTGAGAACAGTTAGCAGTTATT TTTCTGTGGTGTACGGAGGACCTAACAATGAGAATGATGAAGAATGATGCGCGATTTTATGCCTTCTACTCTTTTCTGGG ACCCCCCCAAGAAAAGAAGCACAACCAGAATTGTCTTACCAAGTGTTTAATTGCTGTCATGAGATGGCTGCACAACTTAT GTGCTAATTGCATTTGAAGAGATTAGTTGAACTATTTTTCTGACATGAGTGATCGTAGCATCAACATGTAGATGTTGACA TTTAATGAATGTAGATCATTCACCACTTCTCTTGTATATAAGATGTTTCAAATTTATCTCTATGAACCTTCTCTAGGTCA TCAACTTATCATATGTCACTTTTATCCCTTATTTGGGAGTAGGTAGGCATACTTAGAGCCTCTCAAGGCTAATCACACCT GAGCTGCTTTTGCTGTAAAAAATATGGGAATTGGGTCATCTGCAGTTTGTAAAATAACTGCACCTCCTGCAGCTATGATC TGGTAATTTAAATTTTTTGATCATACCAAAAAATAAAATTATGGTTAAGATTCTCTGCAATTCTTTTTTTCTTTGTTTTT TCTAGGCCAAAATTATATGGATGGATATCTTTTGTTTCCATTTGGTGTCCTCTTCCCTGTCCCACCAATCAAATTGTGTC ATGTAGGCATGTGTATGACAATTATAACTTTACGTGCGTTGTTTTTAAATGGCATGACTCAATTAGAAGGGGAACTAAAT GGGGAACAGAAGATTTGAGTCCTAACCATGGAGGCTCGTCATCCAAACTCCTATAAAGGTTCTATAGTTCACTGAATTTT GGACTTCTGGTCATAGAAATACATAAAGAAAGAAAAATAATAAGAATTCTGAACTTCTGAGTAAAAACATGACCTGCATA TAAGTAATCTTAGTTAAAAAAATTATAATTCTATAACTTCA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0187900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCTTCATCTGGGAGGCCTGAGCAGGATACCAGCAACAACACACATCCCAGGCTGGATGTCTATGTGTGGGACAT GGATGAGACCCTAGTACTCCTCAACTCCTTGCTGAAATCATCCTATGCCGAGGCTTTCAACGGTCTGAAGGATGTCCAGA AGGGCGTCGAGCTCGGGAGGATGTGGGAAAATCTCATTCTACAATTATGTGATGATTATTTCTTCTATGAACAAATTGAA GATTACAATAAGCCGTTTCTTGATGCTCTGACCCAATTTGACGACGGGAGGGATCTGTCGGATTATGACTTCAACCAAGA TGAATTAGGTGCCCCAAATGATGATGACAACAAAAGAAAACTTGCTTATAGGCATCGAATTATAGCCCAAAAATATGTAC AGGGTTTGCATAATATTTTAGATCACGAGGCAATAAAATTCTGGAATGAATTATATGATAAAACTGATGAATATACTGAC AAATGGCTTTCATCAGCACGGGCCTTCTTGAAGGAGTGTTCAGGTGAAAATAACGATGCAGTTTCTTCTCTTGCTTTTGT TAACACAAGCAATGATTCCAATAATGCAAACCCTCAACATATAAATGTTTTAGTGACATCTGGATCGTTGATACCCTCTC TTGTAAAATGCTTGCTCTTTCACCTGGACAGCTTAATACCACATGCAAATGTTTATAGCTCATGGGAAGTGGGAAAAGTT CAATGTTTCCGATGGATCAAGGAGCGTTTCAACCACCCCAATGTTCGCTTTTGTGCAATTGGAGATGGATGGGAAGAGTG TGAAGCGGCTAAAACCATGAGATGGCCTTATGTTAAGATTGACCCAAGGCCAGATAAACTTCACAGGTTCCCTGGTCTCA CACTGAGAACAGTTAGCAGTTATTTTTCTGTGGTGTACGGAGGACCTAACAATGAGAATGATGAAGAATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0187900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAASSGRPEQDTSNNTHPRLDVYVWDMDETLVLLNSLLKSSYAEAFNGLKDVQKGVELGRMWENLILQLCDDYFFYEQIE DYNKPFLDALTQFDDGRDLSDYDFNQDELGAPNDDDNKRKLAYRHRIIAQKYVQGLHNILDHEAIKFWNELYDKTDEYTD KWLSSARAFLKECSGENNDAVSSLAFVNTSNDSNNANPQHINVLVTSGSLIPSLVKCLLFHLDSLIPHANVYSSWEVGKV QCFRWIKERFNHPNVRFCAIGDGWEECEAAKTMRWPYVKIDPRPDKLHRFPGLTLRTVSSYFSVVYGGPNNENDEE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10190:SF16
6 309 304 2.0E-150 –
PANTHER
PTHR10190
6 309 304 2.0E-150
IPR028472
TIGRFAM
TIGR01658
21 298 278 2.0E-118
IPR006545
Gene3D
G3DSA:3.40.50.12350
21 291 271 8.4E-88
IPR038102
SUPERFAMILY
SSF56784
24 282 259 4.21E-6
IPR036412

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004725
Molecular function Protein tyrosine phosphatase activity Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0007275
Biological process Multicellular organism development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0187900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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