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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0188700 |
| Transcript ID | LotjaGi4g1v0188700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aluminum activated malate transporter family protein; TAIR: AT4G17970.1 aluminum-activated, malate transporter 12; Swiss-Prot: sp|O49696|ALMTC_ARATH Aluminum-activated malate transporter 12; TrEMBL-Plants: tr|G7JGH1|G7JGH1_MEDTR Aluminum activated malate transporter family protein; Found in the gene: LotjaGi4g1v0188700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:42997417..42999507) extracted from Lotus japonicus Gifu genome v1.2.
CTGGCAGGTGCTGCAGCCAGTTACATGAGGTTCTTTCCATACATAAAGAAGAATTATGATTATGGTGTGGTTATATTTCT CTTGACCTTCAACTTGTTAACGGTTTCGAGTTACCGGGTTGAGAATGTCTTGAAGATTGCACATGAACGCTTCTACACCA TAGCCATAGGCTGTGCCGTTTGCCTTCTGATGAGTCTGTTGATATTTCCCAATTGGTCAGGGGAAGACCTCCATCATTCT ACAGCTTTCAAGCTTGAAGGCCTAGCCAAATCTATAGAAGGTATGCAAAATCATCTTATATTTAGTTTCACAAATTCACA GCTTTTCATAATTTCCTTTCTCAAAACTCGAAATTCCACTTGCTTTTTATATAAAGCAAAAAACCAACCTCTTTTAACTG TGTAAATTAGCACTCACAGTAGTAAAGGTAAAATCTTGCAGCTTGTGTCAATGAATACTTTTATGGAGAAATGGAAGCTT CTGGTGATATGAACTCATCTGAGGATACCATATACAAAGGTTATAAAGCAGTTTTGGATTCCAAATCTACTGATGAAACT CTGGTATGTCATCCATCTGCTTTTGGTTCATTTTGGAACTAGCATAAAAAACTTATCTTCAAGGGAATTATTGCATACAC CAGATACACACAATTCTTTTGCACTCAGAAAGTCAATATTAAATTATTGCATAAACTTCTGTGTCATACAAGTATTTTGC TTTTAAAATGATCATATATCTGTTGTCATTTAGGGATGAAAATCTTTTAACCCATTCTCTGTCTCATTTTCTTGTTCTAC CAATAAAATTTTGCGATTTAAGGTAAAAAAAAAGACATGAATGAAGTGGTAACAAACTTACATAGATCATTTTTAGTGAT ATGGTAAACAAATTTAGGTGGGACACACAAGTAAAACACAATTGAGGGACATAAGATTTGATCAGTTTCTTAGTGTACTT AACTTAGCTCACAAGGTAGAAAAGAGTCGCTTGATACTGAGATGGTTCTCTTTTGAATTGTGCAGGCATTACATGCAAGT TGGGAACCAAGGCACTCAAGATACTGTCATAGATTTCCATGGCAGCAGTATGTAAAAGTTGGAACTGTTCTTCGCCAATT CGGGTACACCGTGGTAGCCCTACATGGCTGCTTGAGAACAGAAATTCAGGTAACACAAATTTAACCATTTATTTGGAGCT GCAATGCAACTGATCACACCTTAGCATCTCATTTGATACAAGAACAACCATACTTTTCAAACAGCATTGTAACTTACTAC TTCATCTTCATACTAGCATTAGAAATGCACACTTAATGGCACTTCATAGCAATACAAAGTTATCAACACAAAAATAGTAG TAACTCTTCATATACAAACACTTGGAAACTAGAAAGAACACATAAAACAATGAGCAGTTCTGCAATTCAACTGACTGTAA AATCCAAACTTTGATATTTTCTTCCAGACCCCACAATCTGTTCGAGTTCTATTCAAGGACCCTTGCATCAGGCTAGCAGC AGAGGTATCAAAAGCACTTACAGAACTCGCCAACAGCATAAGAAGCCGCCGCCATTGCTCCCCGGAGATTCTCTCCGATC ACCTCCAAGAAGCCTTACAGGACCTCAACACCGCGTTAAAATCACAACCGCGCCTCTTCTTAGGCTCCAACGACAGCCAA GCCAACAACATGCTCGCCATTGCAGCAGCAACAACAACACAGACAAACACAAAGGGGTCGATTTCAAGCGTGAAAACCGA TTCCTCTGCATTGCTGGATTGGAAAACCAAAAGGGGTTGTTCCATGTCGGGTGAACAGGGAAAGGAAGCAGAACGCAAGG TGCTGAGATCGCAGATGAGTAAACTCGCCATCACGAGCCTTGAATTCTCTGAAGCTTTGCCTTTTGCTGCGTTTGCGTCT TTGCTTGTGGAAACGGTGGCGAAGCTTGATCTTGTTATTGAGGAAGTTGAAGAGTTGGGGAGGTTGGGTTGCTTCAAGGA GTATAGAGATGGTGATGAGTTTTCTGTGGTTTGTGAGAAACCAAGAGTTGATGTGTTGGAGAATCATTTACCTTCTCATG CAGGGGATTAG
CDS sequence (LotjaGi4g1v0188700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTTCTTTCCATACATAAAGAAGAATTATGATTATGGTGTGGTTATATTTCTCTTGACCTTCAACTTGTTAACGGT TTCGAGTTACCGGGTTGAGAATGTCTTGAAGATTGCACATGAACGCTTCTACACCATAGCCATAGGCTGTGCCGTTTGCC TTCTGATGAGTCTGTTGATATTTCCCAATTGGTCAGGGGAAGACCTCCATCATTCTACAGCTTTCAAGCTTGAAGGCCTA GCCAAATCTATAGAAGCTTGTGTCAATGAATACTTTTATGGAGAAATGGAAGCTTCTGGTGATATGAACTCATCTGAGGA TACCATATACAAAGGTTATAAAGCAGTTTTGGATTCCAAATCTACTGATGAAACTCTGGCATTACATGCAAGTTGGGAAC CAAGGCACTCAAGATACTGTCATAGATTTCCATGGCAGCAGTATGTAAAAGTTGGAACTGTTCTTCGCCAATTCGGGTAC ACCGTGGTAGCCCTACATGGCTGCTTGAGAACAGAAATTCAGACCCCACAATCTGTTCGAGTTCTATTCAAGGACCCTTG CATCAGGCTAGCAGCAGAGGTATCAAAAGCACTTACAGAACTCGCCAACAGCATAAGAAGCCGCCGCCATTGCTCCCCGG AGATTCTCTCCGATCACCTCCAAGAAGCCTTACAGGACCTCAACACCGCGTTAAAATCACAACCGCGCCTCTTCTTAGGC TCCAACGACAGCCAAGCCAACAACATGCTCGCCATTGCAGCAGCAACAACAACACAGACAAACACAAAGGGGTCGATTTC AAGCGTGAAAACCGATTCCTCTGCATTGCTGGATTGGAAAACCAAAAGGGGTTGTTCCATGTCGGGTGAACAGGGAAAGG AAGCAGAACGCAAGGTGCTGAGATCGCAGATGAGTAAACTCGCCATCACGAGCCTTGAATTCTCTGAAGCTTTGCCTTTT GCTGCGTTTGCGTCTTTGCTTGTGGAAACGGTGGCGAAGCTTGATCTTGTTATTGAGGAAGTTGAAGAGTTGGGGAGGTT GGGTTGCTTCAAGGAGTATAGAGATGGTGATGAGTTTTCTGTGGTTTGTGAGAAACCAAGAGTTGATGTGTTGGAGAATC ATTTACCTTCTCATGCAGGGGATTAG
Protein sequence (LotjaGi4g1v0188700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFFPYIKKNYDYGVVIFLLTFNLLTVSSYRVENVLKIAHERFYTIAIGCAVCLLMSLLIFPNWSGEDLHHSTAFKLEGL AKSIEACVNEYFYGEMEASGDMNSSEDTIYKGYKAVLDSKSTDETLALHASWEPRHSRYCHRFPWQQYVKVGTVLRQFGY TVVALHGCLRTEIQTPQSVRVLFKDPCIRLAAEVSKALTELANSIRSRRHCSPEILSDHLQEALQDLNTALKSQPRLFLG SNDSQANNMLAIAAATTTQTNTKGSISSVKTDSSALLDWKTKRGCSMSGEQGKEAERKVLRSQMSKLAITSLEFSEALPF AAFASLLVETVAKLDLVIEEVEELGRLGCFKEYRDGDEFSVVCEKPRVDVLENHLPSHAGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 345 | 345 | 9.8E-115 | ||
| PANTHER | 1 | 366 | 366 | 3.1E-208 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 366 | 366 | 3.1E-208 | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| Phobius | 43 | 61 | 19 | - | – | |
| TMHMM | 43 | 65 | 23 | - | – | |
| Phobius | 62 | 381 | 320 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Malate transport | The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi4g1v0188700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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