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LotjaGi4g1v0188900.1

Overview

Field Value
Gene ID LotjaGi4g1v0188900
Transcript ID LotjaGi4g1v0188900.1
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein,; TAIR: AT4G17980.1 NAC domain containing protein 71; Swiss-Prot: sp|A4VCM0|NAC45_ARATH NAC domain-containing protein 45; TrEMBL-Plants: tr|A0A151SKE4|A0A151SKE4_CAJCA NAC domain-containing protein 78; Found in the gene: LotjaGi4g1v0188900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:43002910..43008600) extracted from Lotus japonicus Gifu genome v1.2.

TATAGGATCCCTTCCCAAATGCTATAAATAACACACCATCAGTAACCTGTGTTTTTACTCTATCACCATCAGTCCATCAC ACTAATTTCAAGTGTAGTTCTCAACTTGTTCATTCTAAATTCTGAGCCTTAATTAGCCCCCCTTTGAAAACTTGAGCCAA AATTTATTGAGTTGTTCTCATTTTTTGCTTTGCTCACACTTGGGGTTAAAAGTTGGTAGTTAACTTCTGAGTACTGTTCA GTTCATTTCATTCTTCTTTTTTCTGTTCCAGCTTTTGAATTTTCAGGTTTGAATATTAAGGGGAGGAGGTGAGGTTGGGT GGGATAGCTGCCATAAGACACAGCTACTTTCTTCAGGACCATGATCCCTGCATTCAGCGGATGCACTCTGTGGAAGTTTC ACTTGATTCTTGACAGAAAAACTATTCTAGACAAAAGTTTCTATTTTGGATCTTCCACATCTTTAATAGATAAAATTTTG GCACTTAACAATAATTCTCAATATATCAAATTACTTAAAACAGATTCTGGTCTCTACTACTTACTTTTGCTTACTTTTGG GGTTTTATTTTCTTCTGGTGCCTATAGCTTTTGTCATTTCTTTCTTCCTAATCCTCAGCTTCACAACTTTTTGTTGGTCA AGAAGCATAAAAAGTTAATATGGAAGGGGCACCACTGCCACCAGGTTTTCGTTTCCATCCTACTGATGAAGAACTAGTTG GATACTACCTTAAAAGAAAAGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCTGTGATTGATTTTTACAAATTTGAT CCATGGGAGTTGCCCGGTAATCTTCACTTTCACATTTTGATCATAAAAGCCATTATATGTAAACATGCACAGATTTTTTT TTCTACATGCATGACTAAGTGTGGCATATCAAGTATAAACCATTGATTGCATGCAAATTGATTCAAAATAAATTGCGGAA AGAATCTCACGGTGGTGGATAGTCACAAAACCTGAGAAACTGCTTCTGTCCACTGTGATTTTCTAGCGTGTATCTAAACA TTCAGTGAATAGCTTCTAGGTTTTAAAATTAATCCTAAGGAGAAAAGAAGCTGATACAAACAGGGTATAAGAAATAGAGA CTTTATGAATACTAATAGTACTATGCTAGAAAGCAATGTTTTGTTTGTCTTTCTTTTCTACACTTTTTCTTTAACTGTTG ATCATTCTCAACAGCATAGCTTTTAGGTTGTAAAAGCCGGTTCAATGGGCTTTCTTTAGTCAAGCTTAGGAAAAAGCAAT GACTTTATTTTTAAACAAATATTTTTACTGCATTATTTCTTCTAAGGAAATGTAAGTAGACTAATTTGTGAAATGCAGAG AAATCGTTTCTTCCAAGACGAGATTTGGAGTGGTTTTTCTTCTGTCCAAGGGATCGCAAGTACCCAAATGGATCAAGAAC AAATAGAGCTACAAAAGCTGGGTATTGGAAAGCCACTGGAAAAGACAGAAAAGTGATAAGCCAGTGTGATGATGCATCCA CTGTCACAGGGTACCGCAAGACACTGGTTTTCTATCTTGGAAGGGCTCCTCTTGGGGATAGAACTCACTGGGTCATGCAT GAGTATCGCCTCTGTGATGATGATCCTGGACAAGCCTCACCATGTTTTAAGGTACAATACACATCCAGTTTCGTATCATG GATTTAGCTTTGGATTGGTCTTTATTTGACAGTATCATTAAAAAAGGAATTTGGATTCCCTGCACTTAAGGAATCCTAAA TCCACTGAAGTTGGAGACCTAATCGTTAATCTCGACCGGACAACTCTGATTTAAATCGGTTGATTTTATGATCAGAGTTG TCTAATTAAGATCAGACGGTCGCATACCCCTGAGTTCAGTGAATGCAGGATTCTCTGACGGCAGAGAATCCAGGTCCTTG AAAAAGGCTAAAGTTTGTATGTGTGTTGTCACTGTTGTAGGGTGGTTTTGCTTTGTGCCGAGTTACTAAGAAGAATGAGA AGACAAGTTACTCACATGGAGAACAAAAGGGGAAGGAGGGTGCAAGCAGTTCCATCAATGGGAGTGACACCTCTTTAAGA TTCTCTGGTGACGGTTCCTCTCAAGCAAGCCACCTGAATAATGAGAGTCATTATTCAAGCCCTGTTACTTCTCCATACAA TGTGGCTCCAGTGCCAGATACCAACCAAGCTTTCACAGAAACCAACCCTTCAAACTTCTGGATCTCTTCTAACATGATTC TTGATTCTTCAAAGGTATATTGGTTTTTTTTTTTCATTATATGAGCAAATAAGGAAACTTGAGATTGAATAGCCAAATTC TTTGCATATTCAGATCAGTTTCTCTTTTCTAAGAATCAATACTGAAACTCAATAGCTACTTACAAGACCCTCGCTCCATA TTTGATTATAACTTTGAAATCAATTGTAGGAAAATTTTCGCACATGCACTCTAGAGACGTTACTCATGTTTTTGTCACAT TAACTGCAGGACTATGCTCAAGTACAAGATGTTGTGTCTGAATATTCTCCTAGGTATGGCTTACCAAGTGCAGTGACACC AAGGCAATCATCAGAACAAGAACAAACAGAAATTTCATCTAGTTTATCTAACTCAAATTTTAATGCAGAAATTGAATTTT CTGATAATCTCAGTCAAATTGGGTGCATGTCACCTTGCACAAGCCATGGGAATTTCATGGACTTTTATGGAAATTTTGAT GCTCCCTATGAAGGTTATCATCAAATTAATTCAGTCCCACATCCAGATCCCTTTTAACTACAATCTGAAAACAAAAGGAA GATCATTCTCTCACTTTTCTTATAGTGCATGGTGTCAAATTGGGATCAAATGTCCAATTTGAAGGCAAAGATGAGAATTA GTGATCTGTGGTTGCTGGAAGACATTTTAGTATGGTTGTGATAAAACATTGTGGGGGGGTTAATTAGCTGGAGTTTCACT TGATGTGGCATCTTAAAGTATCTCTGAGACAAAGCTTTTTAATGTATGTCTTAGAGTGTTAAATAATGAGTCCTACCTTA GCTATGTACCAGGCAGAAAATGTTTTCTGCTTGAAGTGCTTTTGGATATTTTTATTATTTAGGGCTGTTATGTAGAATGC CCAGGTGCATCTCTTTTTTCGATTTTGCCCGGAGTTGGTTGTTGTTCTATGAAATAAGATTATGGTCGCGTTTGGAAGAA CTTATTTTACAGCATCAACATTTATGCAAGTGTTTTAAACGAGATACCTATAAGTAATTTTGAGCTTGTTTACATAAGTT TTTCCTGGAGTCTACTAGCGATTTAAATACCCTTATTACAGATGCTGCATTGTTTTATATAAACATATATACATACATTG CAATATAATTATAGCAGACCTGAGCTTTATGTGTTATGTTTCTCCTACTGAAACTCTTACAGTAACAATTATGCAGCAGA GGGGTTCCAATAATTAAAAAATGAAGAGCATTGTCCTGTCAAGACCTTTATGTGTTATTTCTATTCCTTTGTCTTATAAA ACATCTTTAAGGATGACTTTATTTAAGGATTAAGAAATTTATTTAATATTTTCAATTCTCATCTCACTAATCCTTTCCTA GTCATTATATTTAATGAAGATATCAAAAGAAACAAAGTTGAGATAAAAAAACTCACACTCTTGATTTCACAGTTAAAAAG AAACAAAGTTATGGAGTACTTGATTACACTGCAAATGTACACATGACATCAGATTTACATGCCGTCCAATGTGTGCAAAT TATTCTGCCAAATAGATTCTCTCACATCAAAATTTAACATGACTTTATCAGATGAAATGTTTATGACTTCCTCTCTTTTC AAGAAACATTTAAGTGTTTGGAAATTAGTTGTGCCCACAATCCAATGCATGTTTAGATAGAAGCAATAACTTGAAGCTTC AACCGGATATGCACGTCTGCCGTCTTCCAGACATGGTTCTAAACATACAATAAATAGGTAGCATCCTAATAATATCCATT AAGAATTATGAAAAGAGAAATATAAACACAAAAAAATGATAATATGAGAAGGAACTCTCGTAGTCCCCATATATTAGTGA GAATCTCTCCATAGAAGCCTTAGTACTAATCTGATAATGTATGACTTTCATGGATCACTATCTTAAAGGGCCAACAATTC CAAAACTATTTAAATAACACACTATCTAATCTGATAACGCCTATTACAGATTCTCCTGCCCTAATACAACCTCACCACCT ACCCAAAGTGCAGTCTAAACGTTTATCTGTGGTTTTTATCTCACTAAGCAAAGTTTTTATATGGTTGTTTAACCAAAACT CCTTCAACTAATATCCTCCACTAGCTGAATTGAAGACGAAATGAGTGAAAAGCATCCTCAACAGAAGTTAATTTAAACAT ATAATTGTCACTTTACATTTCCTGGTGAATCTTTCAAATGAAAGATGAGACTAAAGGCTTAATTAAGTATCATAGTAGGG GCATGGCCTCTTTATAGATACAGGGAGACACGTTTTAACTAAGCGTTTCTGACAATAAGCACTTATCGCAAAAACGCTTA CTCATGAAGCTTATTGAAATAAACTCAAATTATGTGATTGGTATAAGCGCTTATTCACAAGTTAATATGAACAGTTTAGT AAAATGAACTCAAAATAACTTATAGTAGGTCACAAACTATTTACATAATCTCTGTCAAGCAGGGCCATAGACACTAATGA TCAAAGGAAGTACGTACCACTTACCTTTTGTACAAAATTCTAGTATAAGCTTGCAATTTTGGGACTGCAAAACACTTCCA CTTCTTGCAGAACTGCCCTTGACTCATCACCAAAAATAGACTCCTTACCATCCTCCCTCTTAGCATAAGACAGTCCCAAT CTAGACTTAGCTTGTCTCAAGTCACCAATCCCAGAATTGGTATCAGGCCCTGCAAAACCACCCATAACCGGAGCTAATGG AGGCCCAATAAGAAGCCCATCGGCCCCAAACTGCGGCCCGCCGCGAGCATAATCAAACAGGGCTGCACCACTTCCACCAA CCTTGGGTAAAACGATGGGTTCAGCTTCAATGTCTGCCCAATAAAATAGAAAGGGATCAAATGTATCATAGTAGTCATCA GTGCTCCTATAACCTTCAGGGTTGAATGCACCAAACTTGAAATTTTTGTTTGTGTAGCCAATTATCACACATGGACCCTT GAAGTCACAGCAATTGTGGAAATCAGCTGCACTGAATCCATCAATTGTAGCTCTGTAGCAGCATTTCAGCTCCTTCCCTG ATCACAAATGTGCTAAAAATCAGATATATGATTCAACATTTTTTCATGGGAATTTTGCTATCTTGAAGAGAGATTGAGAG AGGAAATATGTACCTTTTAAGAATGTTTTGTCAACCAGAGAAGTTGAGAAAGTGAGATCAATGTCATGGTAGTTAATCTG AGGTTTGTTGTCAGCAACTCCTTTTCTGCCTATGTTCCAACCGAATAAGCAATTTGGGCTTGTCTTCCTCCCTTGGAAAG ATAGAGAGTTTGGGATACAAGATGCCATCCACAGATGACTAACCAAACACTATGTATCCATATTCTGAACTTGCTCCACA AAAACATGTTTCATCACCTTATCCATAATTTGCTCATGAAATATCTTGCATCCCTTTCCGTAAGTTCTTGGAACAAAATG ATACATGGGCT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0188900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGGGCACCACTGCCACCAGGTTTTCGTTTCCATCCTACTGATGAAGAACTAGTTGGATACTACCTTAAAAGAAA AGTGGAGGGGCTTGAAATTGAGCTTGAAGTTATCCCTGTGATTGATTTTTACAAATTTGATCCATGGGAGTTGCCCGAGA AATCGTTTCTTCCAAGACGAGATTTGGAGTGGTTTTTCTTCTGTCCAAGGGATCGCAAGTACCCAAATGGATCAAGAACA AATAGAGCTACAAAAGCTGGGTATTGGAAAGCCACTGGAAAAGACAGAAAAGTGATAAGCCAGTGTGATGATGCATCCAC TGTCACAGGGTACCGCAAGACACTGGTTTTCTATCTTGGAAGGGCTCCTCTTGGGGATAGAACTCACTGGGTCATGCATG AGTATCGCCTCTGTGATGATGATCCTGGACAAGCCTCACCATGTTTTAAGGGTGGTTTTGCTTTGTGCCGAGTTACTAAG AAGAATGAGAAGACAAGTTACTCACATGGAGAACAAAAGGGGAAGGAGGGTGCAAGCAGTTCCATCAATGGGAGTGACAC CTCTTTAAGATTCTCTGGTGACGGTTCCTCTCAAGCAAGCCACCTGAATAATGAGAGTCATTATTCAAGCCCTGTTACTT CTCCATACAATGTGGCTCCAGTGCCAGATACCAACCAAGCTTTCACAGAAACCAACCCTTCAAACTTCTGGATCTCTTCT AACATGATTCTTGATTCTTCAAAGGACTATGCTCAAGTACAAGATGTTGTGTCTGAATATTCTCCTAGGTATGGCTTACC AAGTGCAGTGACACCAAGGCAATCATCAGAACAAGAACAAACAGAAATTTCATCTAGTTTATCTAACTCAAATTTTAATG CAGAAATTGAATTTTCTGATAATCTCAGTCAAATTGGGTGCATGTCACCTTGCACAAGCCATGGGAATTTCATGGACTTT TATGGAAATTTTGATGCTCCCTATGAAGGTTATCATCAAATTAATTCAGTCCCACATCCAGATCCCTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0188900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGAPLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPRRDLEWFFFCPRDRKYPNGSRT NRATKAGYWKATGKDRKVISQCDDASTVTGYRKTLVFYLGRAPLGDRTHWVMHEYRLCDDDPGQASPCFKGGFALCRVTK KNEKTSYSHGEQKGKEGASSSINGSDTSLRFSGDGSSQASHLNNESHYSSPVTSPYNVAPVPDTNQAFTETNPSNFWISS NMILDSSKDYAQVQDVVSEYSPRYGLPSAVTPRQSSEQEQTEISSSLSNSNFNAEIEFSDNLSQIGCMSPCTSHGNFMDF YGNFDAPYEGYHQINSVPHPDPF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31989
2 343 342 3.5E-158 –
PANTHER
PTHR31989:SF250
2 343 342 3.5E-158 –
SUPERFAMILY
SSF101941
4 161 158 4.97E-59
IPR036093
ProSiteProfiles
PS51005
6 161 156 57.676
IPR003441
Pfam
PF02365
7 137 131 2.1E-37
IPR003441
Gene3D
G3DSA:3.30.310.150
15 167 153 1.1E-53
IPR036093
MobiDBLite
mobidb-lite
164 225 62 - –
MobiDBLite
mobidb-lite
172 225 54 - –
MobiDBLite
mobidb-lite
264 288 25 - –
MobiDBLite
mobidb-lite
268 288 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0188900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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