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LotjaGi4g1v0193800.1

Overview

Field Value
Gene ID LotjaGi4g1v0193800
Transcript ID LotjaGi4g1v0193800.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Casein kinase II subunit beta; TAIR: AT4G17640.1 casein kinase II beta chain 2; Swiss-Prot: sp|P40228|CSK2B_ARATH Casein kinase II subunit beta-1; TrEMBL-Plants: tr|I3S081|I3S081_LOTJA Casein kinase II subunit beta; Found in the gene: LotjaGi4g1v0193800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:44636081..44641091) extracted from Lotus japonicus Gifu genome v1.2.

GTTTTGCGGCAAATGCCGGCTCCTTAATTACACAATATCCTATGATGGTAGAAAATCCAAATCCAAGTGAGATAGAAGTA TGTGCCTATGTGGGATTGGACCGGATTGTAAATGGGCTAGCTTGTAGTTGACAAATACAAATAGCATTGTGGTGTGGGTG TGTGTTGTTTGTTTGGTACGTGGGTATGGGTCCCTCTCCCTGAAACCAAAACCCTAGAGGATCTTTCTCTTTTCTAACTG GCACTGAAAAGAAGAAGAAGAGGCGAAATCCAAATTCTATAGGAAGAGGAAGAAGAAGAAGGGGTATGAGGAGTGAGTGA GTGAGTGAGTTAACATTGATTGAATCATCATCCATTTTTGGATTCAAACAAGTGAGCGTTGTGGTAATCGAAGGAGGAGG ATGTACAAAGAGCGCGGTGTTTCCGCCTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCAGCTCGA GCGATCTTCTCCCTCCACTTCCAAGCCCATCATCAACAACGGCAAAGATAGCACCAGAGACAACGACCCTCGTTCCGCTT CCGCCTCCAAAACCTCCAATCTCTCTGGTTCTACCTCTATCTGTTTACCCATTTTCGCTTTTTTTCAATTTGCAATATCA AAATCTTATCTTTTCCCCCATTACCAATTTCCCCCTTTTTTGACCTAATTTTGTTTTCACAAACACCCCTTTTAGTTTAA GTTTCTGTGCTTGTACTGCTTTGTGTTTTTATTATTGTGGGGTCTAGCTACTTTTGTAGTTTAATTCAATGATGGAGTTA GATAGAGCTTTCAATTGGTTCATATTGTTGAATGTTAGATGTGATAGATGTCAGTTCTGGGTTGAATGATGTGAAAGGTT CTGTCATTGCCTAATTGGGTTTTGTTACTTTACTCTGAAATGGTGTTTAATGATCATGCATGGTGTACTGTTAATTTAAG TGATTGATTCATGCTATCTGGCTGGTGAAATCTGCAGATATTGCCTGTTACTATCATGTACTGTGAGAGTTTAAAGTAGT TTCCGAACTCAATTTTTTTTATAATGGAATGGAAAGCTATGGTGGAAATGCATTAATTTGATTGATACCCTGTGCTTTTA CCACCTTTTCTGCTTCAGGAAAATGTTACTTCATAATCTGCTTTTTTTCTGTGTTATGTTGTAATGTTTCTTGTGCTGTT GTTTATAGTTCATTGTTTGTATCCCTTTCAAACAAACATAAATAATACTTTTCTAGACAATGGTGACTGGTCAGTATATT GGTTGTGGGGGACAGAAAGGTAGCAAGAGTTGACAGTGAGAGTGAGAGAGAGAAAGAAACTTAATATATATGTTGCTACC TCCAGCATTTATGAGCTAGTTTTCTTATATTTATGCATTGACTGCAGAGGAATCTGAAACGGACAGTGAAGAGTCAGATG TTAGTGGTTCTGACGGAGATGACACATCTTGGATCTCTTGGTTCTGCAATCTGAGAGGAAATGAATTCTTCTGTGAGGTT GATGATGATTACATCCAAGATGACTTCAACCTATGTGGATTAAGCAGCCAAGTGCCATACTATGATTATGCTCTTGATTT AATTTTGGATGTTGAATCCTCTCATGGTAAGCTTACATTCATATTTTCTAGTCTCTGTGTGTGTGTATGTGATACCTCAG TTTATTTTCTACTTTGTTGTGAAAACTATTATCCTTGAAGCTGAATTCAAATTGCACGCTTGTATTTCTGTAGTTCTGAT TACCTATTTGGTCTTTGTTTGTTCTTTATTGTGTAATGCATGCTATGGTTTGGTTGTAACTCTTAGGTGACATGTTCACA GAGGAACAGAATGAGTTAATTGAATCAGCAGCAGAGATGCTTTATGGCCTGATTCATGCTCGATATGTATTGACAAGCAA AGGAATGACTGCCATGGTAAGACTTCACTTTCACTTACTGTTGTTTTCATGCTTTACCATCCAGGAGATTGACACTGTTA ATGATATTGGAACTTTTGCAGCTGGACAAGTACAAGAATTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACA ACCCTGCCTCCCTGTTGGCCAGTCAGATATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTT ACTATCCTCGGTCCAAGTATCAAGGCAGTATCCTTATACCTTTAATTCATCTTTTTTTCTATTGATTTAAGTTGCTGCTT CTATATATTGTCTCACCTTGAAAATATTTCTATTCTCTTGCGCCTCTCATTTCCTCCTTGTTTTTGAGTTTAATTCTTTC GTCTGTGATATACGTTTTGTATTTTTGTTATGTATCCTTTCAGGTTTAGTTTATTTTGGCAATTACTTCTCATTACATAT ATCCGCTTGTATTTGCAGTCTGGAAAAGAAAAAAAGGATTGCATGTAGCTTATAAACTACTTGCTAAGCAAGATTAACCA TATCTAAGAATAACTAGTTACTGTGAACGCGATAACTTTTCTGGAAATTCTTATGGTTAGAATATAAAAAACATAATACC TTAGAGTATCTTATAATATCTTGATCATCTTTTTATATTCTAACAGTTGTTAATATAGACAAGCCTATGCTGGTCCATAA TGGAATAAGAGAAAGTAATATTGAAACAATGAATGATTAAAGTTAAGCCATTATGGGGAGTAGAGTTTGTTATCTAGATC CATCTTTAAGAGCTGTCTGATATCTTGAAATTGTTTGGTGACTCTATAATAACAATACCACATTTTCTTCTCCGAGAAAA ACTATATCTGCAATTGTACTTCCAGCTGCTGCAGCCTGTAGCTTAGGGATAGTTTCTGAAAACAGTGGATATGGTTTAGA AAAAGCTGCAGAAAAGAGAACAACTTTTTGGAATTTGGAAAAGTTTTGGAAGACCTCTTTTCTCTTTCTCCCTCTCACAC ACACTAATGTCAAAAAGTTTAGTTATCCTTGTGTTTCTGGTTTACTTTTATATTGCTGCCCGAAATCATTTTATTAATTT GTTTGGCATGTGTATGATTTTTGGGATGATTGCATGTTGCTCTATGTTTTGGCTTTATAATTGTGGTTTAAGTTATTGGT GAATACTGAATCATGTACTTGCCAAATTTCCTTAACTCTATCCAGACATTGATGGAGCTTATTTTGGAACAACATTTCCG CACCTCTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGGGCTATGTTCCAAGAGTGTTTGGGTTCAA AATTCACAAGCCTTGAAGCTGAAGTTTAAGCTATCAGGAAAGTAGGAGGCTGCCCATGTTCCATTTAACTCTTCCTGTTG TACTCCTTGCAACATACAGCGGTTCATAAGCTTTCCAAACCAGCACACTCTAGCCATCCCTTTTACTTGTTGTAAGAGCG TGTTGTAAAGAAATATGCAGACATGTGAAGCAAGAGCTTAGTTTCACTCTCGGCTTCAAATTCAAAGAGCAAGTGCTTAG GTACATGACACTTTTTAATGTCTTATCAAAAATTGTATTCATGAAACTTAATGTTGTCTTATGTTCAGATTACATATCTA TTTTCCATTTTAATCCTTTACCTCCCATTTGTGTAGCCTCTGAATTTGTGAATTTGATCTCAAAGGATTCGTACTTTTTG CTGATTCTATAGCTTTCTCGTCGATTTGTGATTATTGATTAGTGAACCCTCTCACTATGTTTGCATCCATAAATACTTAT TAGATTTGGAAGATGGGCCTTTTTCTCCCTCTCTAGCGAGGTTTTAAGATGTACTTGAGGTGGATTTTTGTTTGTGCTTT TTGTTTTCCTTTATGCTCACCTTCTGCGCTCCATTGGAAGTATCCTTTTCTCCCATCTCTTATTTATCCATCTACCTCTT ATTCACTTCTTTCTACTTTTCTTCACCATCATTTCCCTTTTTTTTTTCCACAATTCCTTCCCCGAGCCACTGTAGGATTT TTAGGTAGTTTAGGAACATCGTAGTCTTCTTCTATTGCTTCTCAAAGATCTAACGCTTCAAGATGAGTAGTCATTTTTGC AGCCCACAACTCATACTCCTCACCACCAAAGAATGGTGGTTGACCCACCGTGTATGATGATGCATCTTATTCCATTGTGT TTTCTTTTTGACTTACATGTCCCTTAAGGATAAGAGATATGATACCACTTGTTTGATTTTTTTGGATATAAATGTAGACC ATGTACTCTAGATGGGCCTTTCTCCCTCGCTAGTAAGGTTTTTCTATATACTTGAGGTCTCTAGTGAGGATTTTCTATAT ACTTAGAGGTGGATTTTTGTTTGTGTTTTTTGTTTTCCTTCACGCTCTCTTCTTCTTCGCTTTATTGGAAGTTGTCCTTT TCCCCCTCTCTACACCATCTCTTATTTCTCCTTCTACCTTTCTCCTCTTATTTGCTTCTTTCTACTTTTTTTCAACATCA TTTCCCTATATTTTCTCCATGATTCCTTCACCATCATTTCACTCTAGATGGGCCTTCTCCCTCTCTAGTGTGGTTTTTCT ATATACTTGAGGTGGATTTTTGTTTGTGCTTTTTGTTTTCCTTCTTGCTCTCCTCCTTCTCCACCCTATTGGAAGTTCCA CTTTCTCCCCCCTCTACACCATCTCTTATTTCTCCATCTACCTCATATTCACTTCTTTCTATTTCTCTTCACCATTATTT CCCTCTATTTTCTCCACAATTCCTTCGCGGAGCCACCATAGGATTTTCAAGTAGTTCAAGAACATCATAGTCTTCTTATA TTGCTTCCCAAAGATCCAACTCTTCAAGATGAGTAGTCATTCTTGTTGCCCATAACTCGTACTCCTCATCACCAAAGAAT GGTGGTTGACTCACTGTGAATGATGATGCATCTCCTTCCATTATGTTTTCTGTTGACTCACATCCCCCTTAAGGATAAGA GCTCTGATACCACTTTGTTGGGGTTTTTGGATATGAATATATACCTTCTAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0193800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTACAAAGAGCGCGGTGTTTCCGCCTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCAGCTCGA GCGATCTTCTCCCTCCACTTCCAAGCCCATCATCAACAACGGCAAAGATAGCACCAGAGACAACGACCCTCGTTCCGCTT CCGCCTCCAAAACCTCCAATCTCTCTGAGGAATCTGAAACGGACAGTGAAGAGTCAGATGTTAGTGGTTCTGACGGAGAT GACACATCTTGGATCTCTTGGTTCTGCAATCTGAGAGGAAATGAATTCTTCTGTGAGGTTGATGATGATTACATCCAAGA TGACTTCAACCTATGTGGATTAAGCAGCCAAGTGCCATACTATGATTATGCTCTTGATTTAATTTTGGATGTTGAATCCT CTCATGGTGACATGTTCACAGAGGAACAGAATGAGTTAATTGAATCAGCAGCAGAGATGCTTTATGGCCTGATTCATGCT CGATATGTATTGACAAGCAAAGGAATGACTGCCATGCTGGACAAGTACAAGAATTATGATTTTGGCAGATGCCCAAGAGT TTACTGCTCTGGACAACCCTGCCTCCCTGTTGGCCAGTCAGATATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTA GGTGTGAAGATCTTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCGCAC CTCTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGGGCTATGTTCCAAGAGTGTTTGGGTTCAAAAT TCACAAGCCTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0193800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYKERGVSASKSEDRKRINDVLDKQLERSSPSTSKPIINNGKDSTRDNDPRSASASKTSNLSEESETDSEESDVSGSDGD DTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHA RYVLTSKGMTAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPH LFLMTYGQLKPQKPSQGYVPRVFGFKIHKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11740:SF18
1 269 269 9.3E-158 –
MobiDBLite
mobidb-lite
1 24 24 - –
MobiDBLite
mobidb-lite
1 79 79 - –
PANTHER
PTHR11740
1 269 269 9.3E-158
IPR000704
MobiDBLite
mobidb-lite
25 41 17 - –
Gene3D
G3DSA:1.10.1820.10
76 180 105 2.8E-43
IPR016149
SUPERFAMILY
SSF57798
81 269 189 3.92E-82
IPR035991
Pfam
PF01214
83 266 184 8.2E-81
IPR000704
PRINTS
PR00472
83 99 17 1.0E-65
IPR000704
SMART
SM01085
83 266 184 3.7E-128
IPR000704
PRINTS
PR00472
100 114 15 1.0E-65
IPR000704
PRINTS
PR00472
155 176 22 1.0E-65
IPR000704
PRINTS
PR00472
180 201 22 1.0E-65
IPR000704
Gene3D
G3DSA:2.20.25.20
181 255 75 1.2E-35 –
ProSitePatterns
PS01101
184 215 32 -
IPR000704
PRINTS
PR00472
202 223 22 1.0E-65
IPR000704
PRINTS
PR00472
230 247 18 1.0E-65
IPR000704

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005956
Cellular component Protein kinase CK2 complex A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein.
Subterm of
GO:0019887
Molecular function Protein kinase regulator activity Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0193800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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