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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0193800 |
| Transcript ID | LotjaGi4g1v0193800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Casein kinase II subunit beta; TAIR: AT5G47080.4 casein kinase II beta chain 1; Swiss-Prot: sp|P40228|CSK2B_ARATH Casein kinase II subunit beta-1; TrEMBL-Plants: tr|I3S081|I3S081_LOTJA Casein kinase II subunit beta; Found in the gene: LotjaGi4g1v0193800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44636081..44641091) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGCGGCAAATGCCGGCTCCTTAATTACACAATATCCTATGATGGTAGAAAATCCAAATCCAAGTGAGATAGAAGTA TGTGCCTATGTGGGATTGGACCGGATTGTAAATGGGCTAGCTTGTAGTTGACAAATACAAATAGCATTGTGGTGTGGGTG TGTGTTGTTTGTTTGGTACGTGGGTATGGGTCCCTCTCCCTGAAACCAAAACCCTAGAGGATCTTTCTCTTTTCTAACTG GCACTGAAAAGAAGAAGAAGAGGCGAAATCCAAATTCTATAGGAAGAGGAAGAAGAAGAAGGGGTATGAGGAGTGAGTGA GTGAGTGAGTTAACATTGATTGAATCATCATCCATTTTTGGATTCAAACAAGTGAGCGTTGTGGTAATCGAAGGAGGAGG ATGTACAAAGAGCGCGGTGTTTCCGCCTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCAGCTCGA GCGATCTTCTCCCTCCACTTCCAAGCCCATCATCAACAACGGCAAAGATAGCACCAGAGACAACGACCCTCGTTCCGCTT CCGCCTCCAAAACCTCCAATCTCTCTGGTTCTACCTCTATCTGTTTACCCATTTTCGCTTTTTTTCAATTTGCAATATCA AAATCTTATCTTTTCCCCCATTACCAATTTCCCCCTTTTTTGACCTAATTTTGTTTTCACAAACACCCCTTTTAGTTTAA GTTTCTGTGCTTGTACTGCTTTGTGTTTTTATTATTGTGGGGTCTAGCTACTTTTGTAGTTTAATTCAATGATGGAGTTA GATAGAGCTTTCAATTGGTTCATATTGTTGAATGTTAGATGTGATAGATGTCAGTTCTGGGTTGAATGATGTGAAAGGTT CTGTCATTGCCTAATTGGGTTTTGTTACTTTACTCTGAAATGGTGTTTAATGATCATGCATGGTGTACTGTTAATTTAAG TGATTGATTCATGCTATCTGGCTGGTGAAATCTGCAGATATTGCCTGTTACTATCATGTACTGTGAGAGTTTAAAGTAGT TTCCGAACTCAATTTTTTTTATAATGGAATGGAAAGCTATGGTGGAAATGCATTAATTTGATTGATACCCTGTGCTTTTA CCACCTTTTCTGCTTCAGGAAAATGTTACTTCATAATCTGCTTTTTTTCTGTGTTATGTTGTAATGTTTCTTGTGCTGTT GTTTATAGTTCATTGTTTGTATCCCTTTCAAACAAACATAAATAATACTTTTCTAGACAATGGTGACTGGTCAGTATATT GGTTGTGGGGGACAGAAAGGTAGCAAGAGTTGACAGTGAGAGTGAGAGAGAGAAAGAAACTTAATATATATGTTGCTACC TCCAGCATTTATGAGCTAGTTTTCTTATATTTATGCATTGACTGCAGAGGAATCTGAAACGGACAGTGAAGAGTCAGATG TTAGTGGTTCTGACGGAGATGACACATCTTGGATCTCTTGGTTCTGCAATCTGAGAGGAAATGAATTCTTCTGTGAGGTT GATGATGATTACATCCAAGATGACTTCAACCTATGTGGATTAAGCAGCCAAGTGCCATACTATGATTATGCTCTTGATTT AATTTTGGATGTTGAATCCTCTCATGGTAAGCTTACATTCATATTTTCTAGTCTCTGTGTGTGTGTATGTGATACCTCAG TTTATTTTCTACTTTGTTGTGAAAACTATTATCCTTGAAGCTGAATTCAAATTGCACGCTTGTATTTCTGTAGTTCTGAT TACCTATTTGGTCTTTGTTTGTTCTTTATTGTGTAATGCATGCTATGGTTTGGTTGTAACTCTTAGGTGACATGTTCACA GAGGAACAGAATGAGTTAATTGAATCAGCAGCAGAGATGCTTTATGGCCTGATTCATGCTCGATATGTATTGACAAGCAA AGGAATGACTGCCATGGTAAGACTTCACTTTCACTTACTGTTGTTTTCATGCTTTACCATCCAGGAGATTGACACTGTTA ATGATATTGGAACTTTTGCAGCTGGACAAGTACAAGAATTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACA ACCCTGCCTCCCTGTTGGCCAGTCAGATATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTT ACTATCCTCGGTCCAAGTATCAAGGCAGTATCCTTATACCTTTAATTCATCTTTTTTTCTATTGATTTAAGTTGCTGCTT CTATATATTGTCTCACCTTGAAAATATTTCTATTCTCTTGCGCCTCTCATTTCCTCCTTGTTTTTGAGTTTAATTCTTTC GTCTGTGATATACGTTTTGTATTTTTGTTATGTATCCTTTCAGGTTTAGTTTATTTTGGCAATTACTTCTCATTACATAT ATCCGCTTGTATTTGCAGTCTGGAAAAGAAAAAAAGGATTGCATGTAGCTTATAAACTACTTGCTAAGCAAGATTAACCA TATCTAAGAATAACTAGTTACTGTGAACGCGATAACTTTTCTGGAAATTCTTATGGTTAGAATATAAAAAACATAATACC TTAGAGTATCTTATAATATCTTGATCATCTTTTTATATTCTAACAGTTGTTAATATAGACAAGCCTATGCTGGTCCATAA TGGAATAAGAGAAAGTAATATTGAAACAATGAATGATTAAAGTTAAGCCATTATGGGGAGTAGAGTTTGTTATCTAGATC CATCTTTAAGAGCTGTCTGATATCTTGAAATTGTTTGGTGACTCTATAATAACAATACCACATTTTCTTCTCCGAGAAAA ACTATATCTGCAATTGTACTTCCAGCTGCTGCAGCCTGTAGCTTAGGGATAGTTTCTGAAAACAGTGGATATGGTTTAGA AAAAGCTGCAGAAAAGAGAACAACTTTTTGGAATTTGGAAAAGTTTTGGAAGACCTCTTTTCTCTTTCTCCCTCTCACAC ACACTAATGTCAAAAAGTTTAGTTATCCTTGTGTTTCTGGTTTACTTTTATATTGCTGCCCGAAATCATTTTATTAATTT GTTTGGCATGTGTATGATTTTTGGGATGATTGCATGTTGCTCTATGTTTTGGCTTTATAATTGTGGTTTAAGTTATTGGT GAATACTGAATCATGTACTTGCCAAATTTCCTTAACTCTATCCAGACATTGATGGAGCTTATTTTGGAACAACATTTCCG CACCTCTTCCTGATGACTTATGGACAACTGAAGCCACAGAAACCATCACAGGGCTATGTTCCAAGAGTGTTTGGGTTCAA AATTCACAAGCCTTGAAGCTGAAGTTTAAGCTATCAGGAAAGTAGGAGGCTGCCCATGTTCCATTTAACTCTTCCTGTTG TACTCCTTGCAACATACAGCGGTTCATAAGCTTTCCAAACCAGCACACTCTAGCCATCCCTTTTACTTGTTGTAAGAGCG TGTTGTAAAGAAATATGCAGACATGTGAAGCAAGAGCTTAGTTTCACTCTCGGCTTCAAATTCAAAGAGCAAGTGCTTAG GTACATGACACTTTTTAATGTCTTATCAAAAATTGTATTCATGAAACTTAATGTTGTCTTATGTTCAGATTACATATCTA TTTTCCATTTTAATCCTTTACCTCCCATTTGTGTAGCCTCTGAATTTGTGAATTTGATCTCAAAGGATTCGTACTTTTTG CTGATTCTATAGCTTTCTCGTCGATTTGTGATTATTGATTAGTGAACCCTCTCACTATGTTTGCATCCATAAATACTTAT TAGATTTGGAAGATGGGCCTTTTTCTCCCTCTCTAGCGAGGTTTTAAGATGTACTTGAGGTGGATTTTTGTTTGTGCTTT TTGTTTTCCTTTATGCTCACCTTCTGCGCTCCATTGGAAGTATCCTTTTCTCCCATCTCTTATTTATCCATCTACCTCTT ATTCACTTCTTTCTACTTTTCTTCACCATCATTTCCCTTTTTTTTTTCCACAATTCCTTCCCCGAGCCACTGTAGGATTT TTAGGTAGTTTAGGAACATCGTAGTCTTCTTCTATTGCTTCTCAAAGATCTAACGCTTCAAGATGAGTAGTCATTTTTGC AGCCCACAACTCATACTCCTCACCACCAAAGAATGGTGGTTGACCCACCGTGTATGATGATGCATCTTATTCCATTGTGT TTTCTTTTTGACTTACATGTCCCTTAAGGATAAGAGATATGATACCACTTGTTTGATTTTTTTGGATATAAATGTAGACC ATGTACTCTAGATGGGCCTTTCTCCCTCGCTAGTAAGGTTTTTCTATATACTTGAGGTCTCTAGTGAGGATTTTCTATAT ACTTAGAGGTGGATTTTTGTTTGTGTTTTTTGTTTTCCTTCACGCTCTCTTCTTCTTCGCTTTATTGGAAGTTGTCCTTT TCCCCCTCTCTACACCATCTCTTATTTCTCCTTCTACCTTTCTCCTCTTATTTGCTTCTTTCTACTTTTTTTCAACATCA TTTCCCTATATTTTCTCCATGATTCCTTCACCATCATTTCACTCTAGATGGGCCTTCTCCCTCTCTAGTGTGGTTTTTCT ATATACTTGAGGTGGATTTTTGTTTGTGCTTTTTGTTTTCCTTCTTGCTCTCCTCCTTCTCCACCCTATTGGAAGTTCCA CTTTCTCCCCCCTCTACACCATCTCTTATTTCTCCATCTACCTCATATTCACTTCTTTCTATTTCTCTTCACCATTATTT CCCTCTATTTTCTCCACAATTCCTTCGCGGAGCCACCATAGGATTTTCAAGTAGTTCAAGAACATCATAGTCTTCTTATA TTGCTTCCCAAAGATCCAACTCTTCAAGATGAGTAGTCATTCTTGTTGCCCATAACTCGTACTCCTCATCACCAAAGAAT GGTGGTTGACTCACTGTGAATGATGATGCATCTCCTTCCATTATGTTTTCTGTTGACTCACATCCCCCTTAAGGATAAGA GCTCTGATACCACTTTGTTGGGGTTTTTGGATATGAATATATACCTTCTAC
CDS sequence (LotjaGi4g1v0193800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAAAGAGCGCGGTGTTTCCGCCTCCAAATCGGAGGATCGGAAGCGAATCAACGACGTTCTCGACAAGCAGCTCGA GCGATCTTCTCCCTCCACTTCCAAGCCCATCATCAACAACGGCAAAGATAGCACCAGAGACAACGACCCTCGTTCCGCTT CCGCCTCCAAAACCTCCAATCTCTCTGAGGAATCTGAAACGGACAGTGAAGAGTCAGATGTTAGTGGTTCTGACGGAGAT GACACATCTTGGATCTCTTGGTTCTGCAATCTGAGAGGAAATGAATTCTTCTGTGAGGTTGATGATGATTACATCCAAGA TGACTTCAACCTATGTGGATTAAGCAGCCAAGTGCCATACTATGATTATGCTCTTGATTTAATTTTGGATGTTGAATCCT CTCATGAGGAACAGAATGAGTTAATTGAATCAGCAGCAGAGATGCTTTATGGCCTGATTCATGCTCGATATGTATTGACA AGCAAAGGAATGACTGCCATGCTGGACAAGTACAAGAATTATGATTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACA ACCCTGCCTCCCTGTTGGCCAGTCAGATATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGTGAAGATCTTT ACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCGCACCTCTTCCTGATGACT TATGGACAACTGAAGCCACAGAAACCATCACAGGGCTATGTTCCAAGAGTGTTTGGGTTCAAAATTCACAAGCCTTGA
Protein sequence (LotjaGi4g1v0193800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKERGVSASKSEDRKRINDVLDKQLERSSPSTSKPIINNGKDSTRDNDPRSASASKTSNLSEESETDSEESDVSGSDGD DTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHEEQNELIESAAEMLYGLIHARYVLT SKGMTAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMT YGQLKPQKPSQGYVPRVFGFKIHKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 264 | 264 | 3.6E-150 | – | |
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 79 | 79 | - | – | |
| PANTHER | 1 | 264 | 264 | 3.6E-150 | ||
| MobiDBLite | 25 | 41 | 17 | - | – | |
| Gene3D | 76 | 175 | 100 | 6.5E-42 | ||
| SUPERFAMILY | 81 | 264 | 184 | 1.06E-80 | ||
| PRINTS | 83 | 99 | 17 | 9.4E-66 | ||
| Pfam | 83 | 261 | 179 | 8.1E-81 | ||
| SMART | 83 | 261 | 179 | 3.1E-126 | ||
| PRINTS | 100 | 114 | 15 | 9.4E-66 | ||
| PRINTS | 150 | 171 | 22 | 9.4E-66 | ||
| PRINTS | 175 | 196 | 22 | 9.4E-66 | ||
| Gene3D | 176 | 250 | 75 | 1.1E-35 | – | |
| ProSitePatterns | 179 | 210 | 32 | - | ||
| PRINTS | 197 | 218 | 22 | 9.4E-66 | ||
| PRINTS | 225 | 242 | 18 | 9.4E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Protein kinase CK2 complex | A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein. | ||
| Molecular function | Protein kinase regulator activity | Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein. |
Expression pattern of LotjaGi4g1v0193800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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