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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0194200 |
| Transcript ID | LotjaGi4g1v0194200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcineurin B-like protein; TAIR: AT4G17615.1 calcineurin B-like protein 1; Swiss-Prot: sp|O81445|CNBL1_ARATH Calcineurin B-like protein 1; TrEMBL-Plants: tr|I3SVY0|I3SVY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0194200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44688597..44692385) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAGAAACAAAATCAAGTTTGTATGTGTAAGTGTCTCAAATGAAAATGGATAGGATGATCGTGTTTGGGTCTCGTTAC TGGTAAAATATTAAGTAAAATGTTTCTAAATAGCTATGCATAATGCATAATGCTTTTGTTATTGTATTACTCTATGTGTT TAACCTTGTGATAATTTTTTGGTTTCAGTCACTGTCAGTGAGGTCGAAGCATTATTCGAGCTTTTTAAGAGCATAAGCAG CTCTGTTGTTGATGATGGATTAATAAGCAAGGTACTACATCACAAATTCTTTTTGTTTTTCTGTTTTTCAGAAGTTGGTC TCTGATAAATTCTGCTTTTACATGTTGCTGTCTCTTCACTCATTCCTTTTAAGTATCTTCGCCCTATCTTTAGTTTTTCA CATGTATCTTGTGCCATGTGAAATTATGCTATTAGCTTTACCTGTGTATTTTTGTCTCAAGAATTTAGCCCATAACTACG GTGTGCAATGCATTTATTTGGAATATTCCAGATAATCCATTGTGAAATACAAAACATAATTGTTTTTAATATTTTCAACA TTGCTTCCATACATGAGTGATCTGCATTAAATGATATCTTTTTTCTCACTTTTTTATATTTATTTTTCTTATTGCTCTGT TATATACTTGTTCATAAATTATTCTCTGTCCTAATCCAGTTAACCTTTTTGTTTTTTATGGTTATTTGTTCTTCACACGG AACTCGTAGCCCATAATGTGGTTATGTGCATTCTTGCTTTGCAGGAAGAATTTCAGTTGGCAATCTTCAAGAATAGGAAA AAAGAAAATATCTTCGCAAATCGGGTATTAAACACCATACCTTTTCTTTCGTAGTGATAATTATTGTGCCGTAATTGTTT GCTTCTTGCAAGTATGTTTGAATGTCTTTAAGCGTCTCAATGTGCTTTTAGATCAGCAATTTGCAATTTGCAATTCAAGT AGGTTATTGAATAAATTCACTGTTTCACTCTATTTTTCTAGAAGAAACTCAATTTATTATTCTCCTAACATAAGTCTGTA GCATACTTATTGTGAACACAGGATATACTTCTGATTGAAATAGTTTTTCCAATTCCTACAAATTTTGACTTTTTGGACCT TGATCAAATTGGATCCTTTTGATTTCTCTATCAAAAGTATACTTAAATTTCTTCTTCACTAATCTTAGATACTTGCCCCT AAAAATGAATCATCTCGAGCTCCATCATGTACCCCCAAATAATGGGCTCTAGTGGAATAGAAGAAACGATGTCAAACCAA GAGCACCCTGATTTCTATATACTGCTAGAAAAAAATGGAGGATGTTAGAATCTGCAGCTAATCGGATCATGACTTTCAAG TACTATGTACTGCTTACATTTTGCCATACCATTCTTTAAATTTTGACCCGATATGTAATTGATTCATTAAATGGGTCCAT TACTCTGACAAAATGTATATGCACATTATTATTCTTATTTCCTGGTTTCCTTTTGAAATAGAAAGAAATCAACATTTGAT TACCTTTGCAACTTTCATATTAATTTATTTCTCTACATTCATTCTTGTGGTGTCTCCTTGAAGTAACCATTATTAATTGA TTGGATATCTATTGATATGATTTCAGAATTTTTTTACATGCAGATCTTTGATCTATTTGATGTCAAGAAGAAGGGAGTTA TTGATTTTGATGACTTTGTTAGATCTCTCAATGTCTTCCACCCAAATGCAGCGCTAGAAGACAAGATAGATTGTAAGTTA AAAAATCCTTGACTCATTGTGGTTTACCTTTGATTCCTTTCTGCGATCTGGCTGTACTGATCCATTAGGTTTGGGATTTT CCTGCAGTTTCATTTAGGCTCTATGATTTGGACAGTACTGGCTTTATTGAACGCCAAGAGGTAAGGCGGTCATTATTTGT TCATATACTTTCAAGGAAAATAAAGTGTTCTGTTTGACGAAACAAATGAAGTTCAAATCTACATTCTTATGTCTTTTGTT CAAATTGATGATTTTCATTTTGGTTTTGTTTTTCTCATTGTTCTTCAGAAAAAAGATATTTTATTTTGGTGTGCCGTTCA TATCTTTTTGGTGATTTCTGACAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAGTCAGAAATGAAGTTGGCAGATGA GGTGGTAGAAACAATTATTGACAAGGTGAGTATTCCTGGATAATGTAGTATATTAGATATGAAAGTTCGGAGGAATTTAC GGTGCACAATTGATTGTTTGTGTAAGGTTACACAAGCTACTTTTAACCTGCAATAGCAGGTTTTTCCGGTTTTTTTTAAA AAATAAAAATTACAGATTTATTAATTATAACAATTAACCTGTGATAATTTTACTTAAGTTAAATAGATCTATTAAATCAT TCATCTTCATCTCTCTTTCTTCCCCAACCCTTCCCCTCAATCTACCAAAATCCACCTCCACCAACCTTCGACCAGAACCC ACCCCATCAACCAATATCCATGCCACCACCACCACCACCAACCCAGAACCCACCACCTATTTCCATGCCATCATGCCGGA ATCCTTCTGCCGTCGCGTTGTCGCACCCAATCCTTCCCTCTTCGTTCCCTCAACTCCACCTACGTTTTCCTCTCCCAACC CAGATCTCCTTCCCAAAAACCACCACGAGCTGATCCGACGGCAAGCTGATCTTGAGGAAAACTGCCAGATCTATCTTTAG TGTGGTCGCTTGGACGCGGAGGAGGATGAATCGTTGATCTAGAGAACCAGAAACCAGTGAAGATAAAAACCCAGATCTGT GTTTGAATCCCTGAAACCAGATTTTTAAGAAAACAAAAAAAAAAACCCCAGATTTTAGTGGGCTTTGCCGGTGCGCCAAC GTGCTTCATCAGAGCGGGCTTCGAGGTGAGAAAGTTCGGGATTTGCAAATGGGTTGAGAAATGATCGAATACATCAGAAA AAGGCACGATTGAATTCAAGAAGAATGTGTATCCTTCCCTACAAAAACATGCAAACACAAGATGAATGTCGGTTTAAGAT TTGACTTCCATTTCTTGATTTTGGCCTTGAACTTTCAGATCCCATTGATTGTCCTTTGGTTTAATGAATATGATATATGC ATGCTATGTTGATGGAAATGCAATTATGTATAATGGATTCAAAAAAAAATTCATGGTTTTTAATTTAGTGATTAGGGAGA GAGAAGAGAAACAGATTAATTAAGAATATTTTTTTAAAAAAAATTAATTAACAATAAATTTTTAATTAAGAAAATATGTT TTTTGATTATTTTTTTTAAAACCTACTATAGTGGGTCAAAATGCCAATGTGCAATCATACACAAGTTTTTACTTGTGCAT GTTAAATTTTTCCTGAAAGTTCATCTACAATATGAAGAAAAATTGTGTTTTTTTAGTTGATGGTGTGTTGTGACCTCTTT TTTGTTTCTTTAATTAATTACCACAAATTAAATAGAAAGGTTTGAACTTGACATCATATTTTTTGTGGTCAGACATTCGT GGACGCTGACCAGAACCAAGATGGCAAAATTGACATTGACGAGTGGCGAAAGTTTGTTTCTGAAAATCCATCACTGCTGA AAATCATGACTCTTCCCTACTTAAGGTTTGTGTAGAATTATTTTTACGGTAAATGTGAATCTACTTTCATCCACATTTTG ATGTTCAAACTATAATATAATTCGTTATTCTTGATACTAATGCAGGGACATCACAACTTCTTTCCCAAGTTTTGTATTTA ATTCTAACGTGGATGAAATTGTTGCTTGA
CDS sequence (LotjaGi4g1v0194200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAATTGCACTTCTTTGTGAGTCAGAAATGAAGTTGGCAGATGAGGTGGTAGAAACAATTATTGACAAGACATTCGT GGACGCTGACCAGAACCAAGATGGCAAAATTGACATTGACGAGTGGCGAAAGTTTGTTTCTGAAAATCCATCACTGCTGA AAATCATGACTCTTCCCTACTTAAGGGACATCACAACTTCTTTCCCAAGTTTTGTATTTAATTCTAACGTGGATGAAATT GTTGCTTGA
Protein sequence (LotjaGi4g1v0194200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIALLCESEMKLADEVVETIIDKTFVDADQNQDGKIDIDEWRKFVSENPSLLKIMTLPYLRDITTSFPSFVFNSNVDEI VA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 80 | 80 | 4.0E-21 | – | |
| PANTHER | 1 | 81 | 81 | 1.5E-41 | – | |
| PANTHER | 1 | 81 | 81 | 1.5E-41 | – | |
| SUPERFAMILY | 2 | 71 | 70 | 1.15E-10 | ||
| ProSiteProfiles | 17 | 52 | 36 | 11.389 | ||
| Pfam | 22 | 46 | 25 | 3.9E-7 | ||
| ProSitePatterns | 30 | 42 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi4g1v0194200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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