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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0194400 |
| Transcript ID | LotjaGi4g1v0194400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cationic amino acid transporter; TAIR: AT5G04770.2 cationic amino acid transporter 6; Swiss-Prot: sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic; TrEMBL-Plants: tr|K7KN88|K7KN88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0194400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44744430..44749118) extracted from Lotus japonicus Gifu genome v1.2.
CTTATTAACTGTTAAGAAAGGAATCAAGCAATACTGCCTCTCCAAACTTTCTATTTAAAACCTTCAATTCACTCCTTATT GAAGCCAAGAAAAGAAACTCAGTGCTCACGGACAATAGCTCTAGAACCAACACTGATTCCAGCATCATGACAATGTTTTC AAGTTATTTCCATTCCCTCTACCAAACTCCTCACAGACTTAGAAGAAGAATGCTAGCAACTTGGACCCCAGACCAGGAAT TCAACCAAGTGAGGCAGAGGTCTGGGGCTGACATGAAGAGGAAGCTCAAGTGGTATGATCTTGTAGCTCTTGGAGTTGGA GGAATGCTTGGTGTTGGAGTGTTTGTCACAACCGGTCCTGTTGCCCTTCATCACTCTGGTCCATCAGTCTTCATATCCTA CATCATAGCAGGAATATCAGCACTTCTGTCCTCTTTGTGTTACACTGAATTTGCTGTTCAAGTACCAGTTGCTGGAGGAG CTTTCAGTTATATAAGATTGACTTTTGGTACAAAAACTTTTTCTTCCCATTATATGGGGTTTTTTCATTGGTTTTACTTA TTTTGTGCATGTCTGAAATTCATCTACAATTGATTCTAAAGACAGAATCAATTCTGGGGAGGAATAGCTTCTGAGTGCCA GTATTGATTATGAGAAAAAACAATGATCCACACATGAGCTAAATTTCATTGTTTTTGTATAAAACTTTGTTATTTATGTT GTAGGAGAATTCTTGGGATATTTTGCTGGGGCAAATATACTGATGGAGTATGTCTTCTCAAATGCTGCTGTAGCAAGAAG CTTTACAGAATATTTGAGCTTTACATTTGGACAAAATAATCCAAATGTATGGAGAGTGGAAGTCCCTGTGTTGCCAAAGG ATTATAACATGTTGGATTTTCCTGCTGTTGCTCTTATTCTTATTCTCACTCTGTGCTTGTGTCACAGGTTGGATTTATTT TACCTCCATTTCTCTCTTTTTTCCTCCTTCTGTTTACTTTTGCTATGATGTACATCTACTTATTAGCTTATATCTTATTT GGATTAACTTCTATTTCCTCAAGAATCAGTTTTAGCACCCAAAAACTACTCACAGAATTTCTCCCCAAAATTAATTTTGA CTTTGGAACCAATTGTAAAAAGATTTCCAAACATACACTTAGCCATCCGTCTTTTACTTGATGAACATTTTAATATTTTA TCCTGTTTTGTGACAAACAACTATCTAAGTCTAACTACTTCTGTATATATTTTGGTGCTTCTTGTTTATCTATTTTTAAA ATACCATGGAATGCTGAATCATTAGTTACACTTGTATATATATAACTAGGTTTTAGTGGATTTTGAAAATGATTGTTTTG TTTTGTTAACTTATTTTATCCTTCTGATATTTTGTATGATTGCAGTTCTTGAAAACTCCATCCTTTCAAAAGAAAAAATG TTAATATTGTTGTTAGTTTTTGATTGATTGCAGTACAAAGGAAAGCTCAATATTGAACCTCATTATGACAGTCTTCCATG TGATTTTCTTTGGATTCATCATAGTTGCTGGATTTTGCAATGGAAGTACCAAAAACTTAGTTAGTCCCAAAGGACTAGCT CCTTTTGGTGCTAGAGGTATTCTAGATGGAGCAGCAATAGTCTACTTCAGTTACATAGGGTATGATTCAGCTTCAACCAT GGCTGAGGAGGTCAGAGATCCTTTTAAGAGCCTACCCATTGGAATTGTGGGTTCAGTTCTCATAACCACTTTCTTTTATT GCCTAATGGCCCTGTCTTTGTGCATGATGGTTCCTTACAACAAGGTCAGTAGTATATAAAACAATCAATAACATATTTCC ATCCGCTTATTTTTCCTTAAATTCAATTTTGGCGTCCAAAAGCTACTAACAGAAGCTTTTTTCTAAAATTGATTTTAATC TTAGAATCATTTGCAGAATGATTTCCAAACACGCACTTAGTTCCATGTGTTTTTGCTGTTTTGAATTGGACCTTAACTTT GTACATCATGTACAATAATATATTTGTTGTTTTGTAGTGACAAAGTTGCTATTGCTATATATGATTTAATAGATATCAGA GAAAGCATCATATTCAATAGCATTCCTCAAAATTGGTTGGAGTTGGGCAAGTAACCTTGTTGGAGGAGGTGCAAGTTTGG GTATAGTGGCTTCTCTGTTGGTTGCAATGCTAGGCCAAGCCAGATACCTTTGTGTTATAGGAAGGGCAAGGCTGGTGCCA TCTTGGTTGGCCAAAGTACATCCTTCAACAGGCACTCCATTGAATGCCACAATGTTTTTGGGTAAGCAAATTATTTTTGT CTGAATTAACCAAAGAAACTAAGCTCAAGCCATTATATATGTCAGGTTAGGTCAAATGAATGTTTTGTCTTTTTCCTCTT GATCTTGACATTCCTTTTTGCACTTTTCATATAATTAAAGTAGTTTTCTTTGATTGTACTTACACCTCCTCCATCTATGA ATTTTCTTTCTGACTATAATGCATCAAATTAGTATCACTAATGTTTTATTCACCACTCATTTTCACCTTTACCTACAGAG ATAAAAAATAAAAGAGAGAATTGAAAAATATGCAGAATGATATGATGAGAAAAAAACTGAGATGAGAAGAAAAGTGGGAT GGCATTGGTGTGAAAGGAATAGGAAAATGGTGTACTACTATAATCTATTAAAGTTGAATGAGTATGACAAAAACATCGGA TAATGTTTCATCCACACCTCTCTTTTGAGGTGGAGAGGTGGAATGGTGAGAGAGATAGGAAGAAAAAAAGTAAGAGAGAG AAAATATGAGATGTGATAAATGATAAGATGAGAGAGATAGAAATAAAAAGAAGTGAAAATGAAGTGTTTAAAAAATTAAG TGTGTATATATCATTACTCCAAAAACATCAGCACGTATTCTAAAGCAAAACACTGTGTAGTAATTTGGTTTGACTATATT TGAAGCTGTTATTTAGGAACTGAATTTTACAATCACTTTTCTCACAAACTTTCTCTTTCTATCTTTCTTCTTTCCTTATT TCATCACCCTATCATATTTTTTTATTTCTCTTTCTCATGTCATGTCCATATCTTCGTGTTAGTGATATTAGGTGTGAATT TAATCTCTCATTTCACACCTACAATACCTCTTTTTTGCTTTTCTGTCTTATTTCCGCTCAAGTTTTTTTCATTTCTCTCT TTTATTTTCTTATCACATCATATATCATATTTGTGATTTTTTTTTCTCTTTAGACGTAGGTGAGATTGAAGTTTCGCATA AACTTATTGGACCATATAATACTCTATTGTTGAAATCGGTCTTGTACATGGAAAACAAAAACCCCAATAACTTCACATCA CATTTGAAAATGTTGGTAACATTGAAAAAAAAAGAAGTAAAAGAGATTTTATGAAACAAGAAGTCAATGAGATTTTATAT TTTCTGGTTTAGCGCTGATTCATGTACACCATTTTTTAAGTGACACTAATGACATCTGCAATTTGTGGCAGTTTCTAACC ACCACAAATTATAGAGTAAAAAAGTTTCGTCATTTATCGCCCTAAAAATCGGTGTGCACTAATCATTTTACTTTAATTTT CTGGTTTGATTTGATATCTTTTTGCTAATGCATAAAATAAAACAAGATCAATAGCTAAAGAAAAATAGAAAAGGAAATGA AGAAAACCATAAATCTTCTGTTTTTTTCTTCAATACATGTAGGATTTTGCACAGCAGCCATTGCCCTCTTCACAGAGCTT GACATCATAATTGAGTTGATCAGCATTGGAACGCTCATGGTGTTCTACATGGTAGCCAATGCTCTTATCTACCGAAGATA TGCAATCACCAACCACACCCCTCCACTGCACACCCTCTTGTTCCTCTTCCTTCTCTCCCTCACTGCATTCTGCTTCTCCA GTGCTTGGAAATTCAAACAGCAATGGTGGACTCTGCTACTCTTCGGCGCTTTCATGATCTCCATCACAGCCTTCTTCCAA CACATTGTGTCGGTGCCGCCTAGTAGTAACAACAACCTCAGTAGTACCCAAGATGATGCTCATCATTGGTGTGTGCCATT CATGCCATGGCCAGCTTCCATGTCCATCTTTCTCAATGTTTTTCTCATGACTACCCTCAAAATCATATCTGTCCAACGGT TTGCTATATGGGCAGGCTGCATTATCATCTTCTATGTGCTTTATGGTGTTCACTCTACTTATCAAGCTGAAGAGATTGAC ATGGTTGGTGGTGGTGGAAATGGTGGTGGTGGTGATGAAGTGAATTCAAGTGCCCCCAACTTATTACAAACTAAGGTGGA AATACAAATGTATTAGAGCATCTTTTGAAATTCTTGTTATAAAATTGATTCTGAAATCATAATCAATTTGGGGGGAGCTA TTTGGGCTAGTTTTTGGATTTCAGAATTGATTATGATGAAATTGTTTCGAAGATGCTGTTACTTAGTTGAAAGTTGAAAC AAATTTCTGCTACACCAATTGGCAAGAACAAGAAAATGTTGTGTGTGTACACATATTATGTGAACGAGTGGATTTTTGTA AAGGGATGTTGCATTGGTGTAAAGAGGAAAACTCTTCAATCAACAATCGTTCTTTACAGTGTGAAAGATGAATTGAGTTG ACCTCTATTGTGGGCGCAATGTTGAGTCTTTTGTGTAGTTCTCTTCATG
CDS sequence (LotjaGi4g1v0194400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATGTTTTCAAGTTATTTCCATTCCCTCTACCAAACTCCTCACAGACTTAGAAGAAGAATGCTAGCAACTTGGAC CCCAGACCAGGAATTCAACCAAGTGAGGCAGAGGTCTGGGGCTGACATGAAGAGGAAGCTCAAGTGGTATGATCTTGTAG CTCTTGGAGTTGGAGGAATGCTTGGTGTTGGAGTGTTTGTCACAACCGGTCCTGTTGCCCTTCATCACTCTGGTCCATCA GTCTTCATATCCTACATCATAGCAGGAATATCAGCACTTCTGTCCTCTTTGTGTTACACTGAATTTGCTGTTCAAGTACC AGTTGCTGGAGGAGCTTTCAGTTATATAAGATTGACTTTTGGAGAATTCTTGGGATATTTTGCTGGGGCAAATATACTGA TGGAGTATGTCTTCTCAAATGCTGCTGTAGCAAGAAGCTTTACAGAATATTTGAGCTTTACATTTGGACAAAATAATCCA AATGTATGGAGAGTGGAAGTCCCTGTGTTGCCAAAGGATTATAACATGTTGGATTTTCCTGCTGTTGCTCTTATTCTTAT TCTCACTCTGTGCTTGTGTCACAGTACAAAGGAAAGCTCAATATTGAACCTCATTATGACAGTCTTCCATGTGATTTTCT TTGGATTCATCATAGTTGCTGGATTTTGCAATGGAAGTACCAAAAACTTAGTTAGTCCCAAAGGACTAGCTCCTTTTGGT GCTAGAGGTATTCTAGATGGAGCAGCAATAGTCTACTTCAGTTACATAGGGTATGATTCAGCTTCAACCATGGCTGAGGA GGTCAGAGATCCTTTTAAGAGCCTACCCATTGGAATTGTGGGTTCAGTTCTCATAACCACTTTCTTTTATTGCCTAATGG CCCTGTCTTTGTGCATGATGGTTCCTTACAACAAGGTCAGTAGTATATAA
Protein sequence (LotjaGi4g1v0194400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMFSSYFHSLYQTPHRLRRRMLATWTPDQEFNQVRQRSGADMKRKLKWYDLVALGVGGMLGVGVFVTTGPVALHHSGPS VFISYIIAGISALLSSLCYTEFAVQVPVAGGAFSYIRLTFGEFLGYFAGANILMEYVFSNAAVARSFTEYLSFTFGQNNP NVWRVEVPVLPKDYNMLDFPAVALILILTLCLCHSTKESSILNLIMTVFHVIFFGFIIVAGFCNGSTKNLVSPKGLAPFG ARGILDGAAIVYFSYIGYDSASTMAEEVRDPFKSLPIGIVGSVLITTFFYCLMALSLCMMVPYNKVSSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 51 | 51 | - | – | |
| PANTHER | 4 | 307 | 304 | 3.6E-183 | – | |
| PANTHER | 4 | 307 | 304 | 3.6E-183 | – | |
| Gene3D | 42 | 308 | 267 | 1.6E-77 | – | |
| Pfam | 47 | 307 | 261 | 7.8E-33 | ||
| Phobius | 52 | 74 | 23 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 75 | 79 | 5 | - | – | |
| Phobius | 80 | 102 | 23 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 103 | 122 | 20 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 123 | 143 | 21 | - | – | |
| Phobius | 144 | 173 | 30 | - | – | |
| Phobius | 174 | 193 | 20 | - | – | |
| TMHMM | 179 | 196 | 18 | - | – | |
| Phobius | 194 | 199 | 6 | - | – | |
| Phobius | 200 | 219 | 20 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 220 | 238 | 19 | - | – | |
| TMHMM | 235 | 257 | 23 | - | – | |
| Phobius | 239 | 258 | 20 | - | – | |
| Phobius | 259 | 278 | 20 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 279 | 303 | 25 | - | – | |
| Phobius | 304 | 309 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0194400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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