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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0196600 |
| Transcript ID | LotjaGi4g1v0196600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor-like protein; TAIR: AT4G17570.3 GATA transcription factor 26; Swiss-Prot: sp|Q8W4H1|GAT26_ARATH GATA transcription factor 26; TrEMBL-Plants: tr|I1K0V3|I1K0V3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0196600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45180305..45187235) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACTAAGAGGTCACATACACACACACACACAACACAGAGACCTTCCTCTCTCATCTCTCTCTTTCCATTGCACCTT CCCTTCTTCTCTTCTCTTCTCTGAGATTCCTCCAATGCTCTTTTCTCTTCCATTGGATTGTACAGATTCCCAGCTAGAAT ACCCAGATTGCAATCTCTGCAATTCTACCTGATTTGTGTGAAAAAACTACCAACCTTTAAAGACTGTAAAACTCAAAACT CTTGTGGGTCATTTGGCTTCTGCTTTTTCATTTTTGATTTTTCCTTGCAAACCATCTTCTGGGTTTGCTGCAGAATCAAG CCTTCAACACCCACTACTCTTAACGCCGTAAATAAGGCTTCGAAAAGGACTGTTATTATTTTCAGAAAAAAAATTCATTT GTGTTCAACTTTTTCTTTTTGTATATAAATTATTTTCTGCAAATTTTCTTCTTGTTTTTCCCCCTTTCATTTCTGGAAAA AAGATTGAGACATGGGGAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGTGAGTTCTTGTTTCTCCAATACACAATT TTTTGTTTGCTGTTTTTTCATTGGGTGTTATTGAGTATTGACCTCCTTTTCAAATTTGTCCTCTTTTGATTCAAAGTGAT TTTGATAAAATAGAGATTCTGACATGTATAAACAATCTAGAAAAAAAAATCAGTGTGATGTTTTTCTGGATGTAGTGAAA TTCAAGAGTACAAGTATTGTTGTTGGCTACAATATTTGGAATTGAAAGTTCTTGAAAATTGTATTGATTTCCTCCTTTGA TGTGTTGTCTGTCATTCCTTTGGTGGGTCTTTGTTTGTCTTGATTATGGTTGAAGCATGATCAAATGTAATTGGTGCAAA ATCAAGCTTGGATGCAGAACACCCATTGCTGTTGAATGTGTTTATCAAAAAATGTTAACTCACGGTTCACTTCTTCCCAT TTGGATTATGTGAACATAAGAAAAAGGGGAAAAGAAGGGAGGATAATTGTGCATTTGTAAAATGTCGATAGCTAAGCCAC TCGTTTGTTGTTTTGTTCGCATTTTCTCTATGTAGTAGCTTCTCATTGTACCATTGGATATTGATCCCTGCATTGTATCC ATCCTTACCCCTGCCTTCTGGCTGAAAAATAAAAATAAAACACCATGGTTCATTATCATATTTTCAAGCTTTCTCAATGT GAAACAGCCGCTTTTGTTCATACTGATCACCTCAATAGAACTACACCTGCAACTTATGCCTTAATGTTCATTGCTTTTCT GATATGTTGAAAACGGTTTCCAAGTGCGTGCTGAAGTTATTACTATTGGTATACACTCAAGAACTCTAGACCAGTGTTTG AGTATGACTATTTCTATCTCAGAAAATGAGTATGTTTCATTCAGATTGCCTTAACATTTATGCCTCAATAGCAGATAATT GTCAATTGGTTTGTTTCAAATGCAAGCATTGTCTTCAGTACCAGTTTACTAGTGTCTTAACCTGAGTCTGATAATATCTG CTTGAGGAATATGGGCTACGCCAATGTCTTGTTTTCCTTGCAAAATATTATTGCTATGTATTATTGAAAATATGTAAGCC CACCAATAACAGACAGATAGTCAACAATTCATGCAAGAATGACTACTTCCTTATGATAATGAATACTGATAGATGATGTT ACAACCTTAAGATGTTTGTTGAGCTGAGTTTTCTGGTATATCTGGGAAATATGAATATGTGGTTGTTTAATGTCAATCCA ATAGATAATCTTTCTTCTTTGTTTACAAGGGTTTTTAAATTTTAAAGATTTTCTGACAAATAAACCTTGCAACAGGCACA CCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGTACTATGCAACGCATGTGGATCTCGATGGAGGACAAAGGGAACACT TGCAAATTATACCCCTTTACATTCTCGGGCAGACAATGTTGATAATGACGATCAAAGGGTTTCCAGGCTAAAGAACATGT CATTAAATAAGAACAAAGAAGTGAAATTTGTGAAAAGAAAGCTGAACCATGATAATGCTGCATCTGGAGGGTTTACCCCT GATTATTATCAAGGATTCCAAAAGTTTGTGGATGAAGATACTAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAACTC AGAGAGCTGTGCTCAATTTGGTGGCATGGATGCTAGTGATTTGACAGGTTGGAGCATTACTGTTTGCTAATATCATTGGA AGATTTTTCTTCATAACTGATTATGGAAGCATTATCCATTCAATTGAAATAGTATGGATCTTAATGATAGTCCTGATTTA CCTGATCACAATGAAGAAATGGATAATGAAATGGGGGAAAAAGGAAAAGGATAAATGGTGGAATCACAGATCAACTTACA AGTCCTTGCTTTTCCTAAAAGAAGACAAGTTAATCTTGCTTCAAATTGTGCGTTCTGTACATATTAGTGTTCTTTATTGA AAAGCAGAATTCAAGAAGTGATTTAAAGAGTTTTCTACAATGAAGGTCTAGTTGTGTCTCAAATCAATTAAAATGGCAGG TTTAACAATCAGATATAGCTTATCAACTATGTATTTCTATTTTGTGTTTGTTTGTCTGTATTATTCCCTTGATATTTCTT GAGTAAAATGACAAGTTTTACATGTGACATAACCTGTCTTGTTCTTCATCATTGGTTTGCTTGGATCAAGAACTTTTACT TGATGTATTTGTGCTAAATGTTTAATCTAGTGCCTTTCAAAAGAGGCACTTTATTTCTTCAATAAAAGCAAGCAATTCTA ATGTAGATAGTTTGGCTAATTCAGGACCTGCTCAGTCAGTCGTCTGGGATACGGTGGTGCCTTCAAAAAAGAGGACATGT GCAGGTCGTCCAAAGCATTCATCTGTTGAGAAGCTCACAAAAGACTTATGTTCTATTCTTCATGAACAGCAGTCTTATTT TTCTGCTACTTCTGAAGAGGAGCTTCTTTTTGAGAGTGAAACACCGATGGTCTCTGTTGAGATAGGACATGGAAGCATTC TCATCAGGCACCCTAACTCCATAGCTCGGGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCTTA ATGAGTGAGGCATACTCATATTCTGGTACCATTCCTATGCATAGTGATTCCAGTGGCATGAATTTCTCATCTCAGGGTGT TGAAAAGGTTAGAAAATCTGCTGGCCATACAATCCAACTGGAGCAACTTGAAAGGCATGTTTTCCTACACCACTTTATAG TCTTCCATTATTTCTAGCCGGTTATGCAAGATTATTAATATGATTATAAGAGTTCAATTTTGTCCATTACTTCTGAAGAC AGTCAAATTCATGTTGGTATTTTCCCCAAAAGTGGTATGCGGATCTTAACATGTTTATGGATTGTCTTAATACCTGTGTC TTTGTGGAAATATATTAGACACATGCGTGTGGAAATTTATTTGGAGAAGTGATACAAAGATTGAACTATTCAGTACTTCA GCGATTAAGATTTCTTTATTTTCTAATTTCAGGGGCAAGTCTCAGCTTGAAAAACTAGATGTTCCTGGAAATCATGTTTC ATCACTATGCTCAATAGATTTAAATGTGAGTTACATATCTGTATTCTTTTTTCTTTTTTCTGCTTGTAATATGTAATAAG ATCATCTTTATGCAAATGAGATGTTTCATCAGAATCTGTTCTTCATCAATACAATATTGGGCTTAAGTTGTTTGATACAC CGAACCTATATATAATCTGTTTTGGAATCTTCTAAATTCTTGGTTCATATAATTACTCTTGGGGCTTTCGGGATAGCAAC TGAATTTCAAATATGATTCAAAATTCATTTTCAGAGCTGGCATTGTATCCTTTCCATAAACAATATGCTCATGTTGATGG GTCCTAATTGTTGTCTTGTTCAGCATACACATTCATCACTATTATATACATTATGGTAAAAGCTTCATGTCCATCAAATT GTTGAATGTTGAATGTAACTGTTATTGTGCTTGATTAGGATGTAGTGAACTATGAGGTGTTTTCAAGAAACTTGACAAAT GAAGAGAAGCAGCAATTACTGAAGTATCTCCCTGTGGTTGATACTGCTAAACTTCCTGACAGGTTAGAATCTGTTACTTG TGTGTTATCACTTATCAGATTTTATTGTCAATGTTTTTTGGTAACTGAGTTTTATTGTTATTTATCATCGAATACTCATT CGATGTTGTTTTTTAAGCCATAATCCTTGAAGATAAGGTTTCGTTTCTGTCTTCTCAGAAGGAGGGTAGTTCGTAAATAC TAAATACAGAGTCTAAATGCAAAGTTGGTGTGAAGGTTGTTTCAAGAAAATTGAAGGCATTCATTTGAGACATCATTGCA TTAGAATGTATGGCATGCTTAGAATGCATGATCTCTGACTGCTTTTAAATTCTTGTCCCCGCCGGCCGCCTGTTCCTCTG TTTTGTTCTACGTAAATCATGTGCAACTGCTGCCATGATTTCATTTTCCTTTTATTGGCTTGTTTAGTCTTTTGAGGTGG TTAATATGTTAGAGTCTCTTTGAATTCAACTTGCTTTAGTAATTGTTGGCAGTAGAAGTTGCGGATATTTTCTAGTGATG GGATGGACGAGAAAATGAGGTGTGATGTGAATGAATCATTGCATTAGAATTTTTCAAATTAATGTACAAAAGCATCCATT TAACTTCCAATATCCTGCCACTTGATGCTTTAATATTTCAATTATTTGAAAACAAGAATAAAAAAATGTTTTTGCAAAGC ATCTGATATCCAACTGTTCAGGCTATAGAAGATATTTAGACTGAATACGAAGTTATTCACGGGTTATGTTGTTGTATGTG CAGTCTTAAAATCATGTTCGATAGCTTTCAATTCAAGGAGAACTTCAGTTATTTTCAGCAACTTCTTGGGGAAGGTGTCT TTGATATCTCTTTGGTAGGGGCAAAACCTGAAGCCTGCAAGACATTAAAAAGGCTTGCATTATCTAATCTATCAAAGTCA AAATGGGTAGAATGCTATAATTCTCTCAAGGTTAGTGTTGGTTTTCTAGATATCAATGATTTTATGTCGATAAATAACTT TTGCATATTGATACTCATTGGATATTACATGAATTTAGTTTACATACACTGAGAGTGTTAAGAGTTATATCACTCCACAT TTTCTAGTTAGGATCTTTTTGATTATCATTTAATTACCACAAAACAAATAAATGAGTTCTGATTGGATCAGTTTAAAAAG TCAGTGCACAGTTATTAAACACTTATTACATCTAGGGGTGTGGTGTGGTATCTTTGTCATAGATTCAAGTTAACATATCT TTCGCTAATGTCAGGGTGCTCATGATTGCTGATTGAATATGAATTATTTTTGAAGAAACAAAGCAACCTGTCAATATTAT TGTTCATACAACATATTTAAATCAAAGAGAGAGGGAGTTGAGTTTGATTTGAGGCACAATAGGAAATAAAGATAGATAAT GTGATTTTTTGAAGTGAATATTATTTTGAAAGAAGTACATAAAATTTTGATTTAATTTGAATTGAATTGGTTTTCAAATT GGATCCACTGACTAATCTAATCATTTACTCTTTTTTTTCCAATTAATTTTCTTGGATTAGTAAGTTTTAAACACTCCTAA TACCACACCCTTCTCTGGTGCAGAAAGGTGGAAACCAAGCTGGAAAATGTATTGATCTGGGATCTACTGCTATGGCATCA AGTAATGTTGCAAATGTCAAGAGATTGCGGTACAGCCAGAATCAGAACTTTCCAGGTTTGCTGAAAATCTTATATCTTGA ATGAAAAATAAAATATTCACATACTTACCTTGCAAAATGCTGTAGATATGTTGAGCTTCTAATTTGAGATTGTTAGAAAA CCAATTCTATAATTCTCTTCTTTGAGTTCGTATTAGAAACACATACATCAGTGCATTTGTGTTATTCTTGTCCTTTAGTT AAGAATGTAGAATTAGAACTGAATGTAGAATTAGAACTGAGCTTTTGGTTTCCGCTTGTCTCTAGGATTTAACTAATCAT TCTTCTGCAAATTTCAGAATTGAAGACAATGAGGAGCCCCAAGAGGGTGACCATAAAGGCTAGCTGTGAAGGCAAAGAAG TTGCAGAAGAAGGCTCTAACTGCAGTCCAAGAAGCCTATTTGCATTGCCAGGTGATGGTAGCTTGTGCATGCTGGATTCT TTGAACTTTGTTGCTGAGAGTTCTGATCAGGATTTGCTGCTAGAGGTGCCATCTAACAGCTCTTTTCCACAAGCAGAGCT CCTCCACCCAACCTCAAGCTCCTGGTGTCCATGCCAGCACCAGTAGTAGCTCAGTATATTCCCATGTTTCTCATCCTTAA CTTATCTTTAATATAGGTTACTCGGACCGCTATGGGGTTAGGGTCTGTGCGTACGTTGCATCTTAAACACTAAAATCCAT GTACACTGGATATGGTGGTTGTGCTTTATTTTTTTCCTTGCAACCTTCTTGAGCTTGGATTGCCAGAGGATGAAGTTGGA TGGGTCTCTTTTTATTTGTATAGGTTGGTAATAGACTGTAACATATAGCATGAAATGCGGAGCGATAATATCCGGAGTTT TGTATGCAATTGTAGTTTATGTTTTGTGGATATTATGTGACACCCTTTTCCCCCTATAATTACCCCCATAAAAAAGATGA CAGCTTTATAGAATGGATGAGGAAGAAGTTGACAATTACTGTCTGAACTTTATTTGCATATTACCTTCTATTCTTGTCCA TGTATTGGCATTCTACAGGTACTTTGCTCTAAGCATTGCTAGGTCAAGAATTTAACATGTCATAAGATACACAGTATATA GTGGTACTTTATTTTGATGTGATACATAGGTTTAATACAAGTTTATACATA
CDS sequence (LotjaGi4g1v0196600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGTAATGGGCCACCTGAGAAGCCAGT ACTATGCAACGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATTCTCGGGCAGACA ATGTTGATAATGACGATCAAAGGGTTTCCAGGCTAAAGAACATGTCATTAAATAAGAACAAAGAAGTGAAATTTGTGAAA AGAAAGCTGAACCATGATAATGCTGCATCTGGAGGGTTTACCCCTGATTATTATCAAGGATTCCAAAAGTTTGTGGATGA AGATACTAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCATGGATGCTA GTGATTTGACAGGACCTGCTCAGTCAGTCGTCTGGGATACGGTGGTGCCTTCAAAAAAGAGGACATGTGCAGGTCGTCCA AAGCATTCATCTGTTGAGAAGCTCACAAAAGACTTATGTTCTATTCTTCATGAACAGCAGTCTTATTTTTCTGCTACTTC TGAAGAGGAGCTTCTTTTTGAGAGTGAAACACCGATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCACC CTAACTCCATAGCTCGGGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCTTAATGAGTGAGGCA TACTCATATTCTGGTACCATTCCTATGCATAGTGATTCCAGTGGCATGAATTTCTCATCTCAGGGTGTTGAAAAGGTTAG AAAATCTGCTGGCCATACAATCCAACTGGAGCAACTTGAAAGGCATGTTTTCCTACACCACTTTATAGTCTTCCATTATT TCTAG
Protein sequence (LotjaGi4g1v0196600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHSRADNVDNDDQRVSRLKNMSLNKNKEVKFVK RKLNHDNAASGGFTPDYYQGFQKFVDEDTSNRSSSGSAISNSESCAQFGGMDASDLTGPAQSVVWDTVVPSKKRTCAGRP KHSSVEKLTKDLCSILHEQQSYFSATSEEELLFESETPMVSVEIGHGSILIRHPNSIAREEESEASSLSVDNKQCLMSEA YSYSGTIPMHSDSSGMNFSSQGVEKVRKSAGHTIQLEQLERHVFLHHFIVFHYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 280 | 280 | 1.9E-162 | – | |
| PANTHER | 1 | 280 | 280 | 1.9E-162 | – | |
| SMART | 1 | 53 | 53 | 1.9E-9 | ||
| Gene3D | 2 | 67 | 66 | 2.6E-11 | ||
| SUPERFAMILY | 5 | 46 | 42 | 6.18E-12 | – | |
| CDD | 6 | 51 | 46 | 9.53299E-17 | ||
| ProSiteProfiles | 7 | 40 | 34 | 11.2 | ||
| ProSitePatterns | 7 | 32 | 26 | - | ||
| Pfam | 7 | 41 | 35 | 2.9E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0196600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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