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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0200700 |
| Transcript ID | LotjaGi4g1v0200700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT2G44940.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034; TrEMBL-Plants: tr|A0A140WWF4|A0A140WWF4_LOTCO AP2/ERF; Found in the gene: LotjaGi4g1v0200700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:46570538..46572115) extracted from Lotus japonicus Gifu genome v1.2.
AAAATAGTGGTACGTCCGCAGATCATTTTCGCATAATCATATTTCTCACATTCCATAATGGTGTTATCTGTATGTGTGTC TATTGAAGAGTATAACACCACACCAATGTGACAAAAAATGCAACTTTTTTCTCTTTTCCGGTTGGACCCATATCTTTAAT ATGTGAAAGAATTATAAGTACTCCAAGCTCAACCTACTTCTCCTCACCACAATTTCCCCTTCACCTCACCACAATAATTC TTCCCCTTCCCTCTTTCAATGGACAAGGAAGAATCTGTCCTTCCAGACAGTGAACTTCAACCAGCAACTACCTCCTTGTC TCTCACCATTATTGCCACCACTTCCTCTTCTTCCTCCTCCGCAGAAGAAGTCACAAACATGGTGAAGAAGAACAAGAATG AGAAGAAGGGTGTGAAGAGAAGCAACGATGGGAAGCACCCAACTTACAGAGGAGTGCGCATGCGTCAATGGGGCAAATGG GTGTCAGAAATCAGAGAGCCGAGAAAGAAGTCCAGAATTTGGCTCGGCACTTTTCCCACGCCGGACATGGCAGCTCGAGC ACATGACGTGGCGGCTCTCACCATTAAAGGCAGCGGAGCTTACCTCAATTTCCCTGAATTGGCGGCCGAGCTGCCGCGCC CGGCCTCTACTTCCCCGAAGGACATCCAAGTGGCGGCCGCCAAGGCAGCCGCCACAGATTTCACCTGGCACCGGAGCAGC GAAGCCGAAGCCGAGACCACTTCCTCTTCCTCTTCCTCCTCGAGTCACAATCACAAGCAAGGATCATCATTGTTGAAGGG TGAGGATGAGATGTTTTTGGACCTTCCTGATCTCTCACTTGATCACTTGAATCATAATGCTGATGAGGGGTTTTATTATT ACTCCTCTGCTTGGCTTGTAGACTCTGGTTTTCACCTTGAAGTTGAAGAGCCATTTCCATGGGAGGAATCATATTAATAT GCACCCAATTTCCCTTTTTGCAGCTTGTGCTATACCACTCTTTTTATTCTCTTTCTACTTTCTTCCTTTCACCTTTTGGG CTTATGTCTATATCTAGAGCCTTGAATTGAAGCCCTATGGTATCTAGTGTCTACTATGAGTGCCACTTCACTATTTCAGT GATAGCATTAGAAACTCCTTTACACCACTTGATTCTGGAGAAGTTAAATGCCTTTTGGATTGACATAAAATTATAGTGGA TAGAAACAACTTCTTTTAATTTTTTGCAATTGTTTAATTTATGTACATTATAATTTTAACTGCATCGTGATTTTTTATAG TGTATCCAAACATGTACCAAGTAGCTTCTATATCTTAGAATTGATTCCTAGAGAAATTGATGGAAACATTTTATAAATCA AGTGCATGGAGTGAGTTTTTTTTTTGTGTGCAAGAATTTGCGTAAGTATTTTAACACCACAGAAAAATGCATTCCAGATA AGGTAATTGAGTTGCCCTGCATCACCTTTCTCAGTTTATTTAACTTCCTCATCTTTTTCTGTCATCTGTATATTCTCCCC TGTTTGCCAAATTTCAGTTGAATTATGTAAATGAGAGTGTGGAATTAATAAAATCCAG
CDS sequence (LotjaGi4g1v0200700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGGAAGAATCTGTCCTTCCAGACAGTGAACTTCAACCAGCAACTACCTCCTTGTCTCTCACCATTATTGCCAC CACTTCCTCTTCTTCCTCCTCCGCAGAAGAAGTCACAAACATGGTGAAGAAGAACAAGAATGAGAAGAAGGGTGTGAAGA GAAGCAACGATGGGAAGCACCCAACTTACAGAGGAGTGCGCATGCGTCAATGGGGCAAATGGGTGTCAGAAATCAGAGAG CCGAGAAAGAAGTCCAGAATTTGGCTCGGCACTTTTCCCACGCCGGACATGGCAGCTCGAGCACATGACGTGGCGGCTCT CACCATTAAAGGCAGCGGAGCTTACCTCAATTTCCCTGAATTGGCGGCCGAGCTGCCGCGCCCGGCCTCTACTTCCCCGA AGGACATCCAAGTGGCGGCCGCCAAGGCAGCCGCCACAGATTTCACCTGGCACCGGAGCAGCGAAGCCGAAGCCGAGACC ACTTCCTCTTCCTCTTCCTCCTCGAGTCACAATCACAAGCAAGGATCATCATTGTTGAAGGGTGAGGATGAGATGTTTTT GGACCTTCCTGATCTCTCACTTGATCACTTGAATCATAATGCTGATGAGGGGTTTTATTATTACTCCTCTGCTTGGCTTG TAGACTCTGGTTTTCACCTTGAAGTTGAAGAGCCATTTCCATGGGAGGAATCATATTAA
Protein sequence (LotjaGi4g1v0200700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKEESVLPDSELQPATTSLSLTIIATTSSSSSSAEEVTNMVKKNKNEKKGVKRSNDGKHPTYRGVRMRQWGKWVSEIRE PRKKSRIWLGTFPTPDMAARAHDVAALTIKGSGAYLNFPELAAELPRPASTSPKDIQVAAAKAAATDFTWHRSSEAEAET TSSSSSSSSHNHKQGSSLLKGEDEMFLDLPDLSLDHLNHNADEGFYYYSSAWLVDSGFHLEVEEPFPWEESY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 35 | 35 | - | – | |
| PANTHER | 26 | 199 | 174 | 2.0E-76 | – | |
| PANTHER | 26 | 199 | 174 | 2.0E-76 | – | |
| MobiDBLite | 28 | 65 | 38 | - | – | |
| MobiDBLite | 41 | 64 | 24 | - | – | |
| SUPERFAMILY | 62 | 120 | 59 | 5.62E-21 | ||
| SMART | 62 | 125 | 64 | 1.5E-35 | ||
| ProSiteProfiles | 62 | 119 | 58 | 22.866 | ||
| Pfam | 62 | 111 | 50 | 1.6E-11 | ||
| Gene3D | 62 | 121 | 60 | 3.4E-28 | ||
| CDD | 63 | 121 | 59 | 8.94303E-32 | ||
| PRINTS | 63 | 74 | 12 | 6.7E-10 | ||
| PRINTS | 85 | 101 | 17 | 6.7E-10 | ||
| MobiDBLite | 150 | 177 | 28 | - | – | |
| MobiDBLite | 155 | 175 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0200700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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