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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0201900 |
| Transcript ID | LotjaGi4g1v0201900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | auxin canalization protein (DUF828); TAIR: AT4G17350.1 auxin canalization protein (DUF828); Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|I1K0R2|I1K0R2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0201900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:46747081..46751274) extracted from Lotus japonicus Gifu genome v1.2.
TAATACTCTATAGCCTACTTTGTTATATTGAGCTTCGTGAATACCGGATTGTCTCCTATTCTTTAATTATCTTCTACCTG AATTCATGGTGCATGGTCCAAAGCACAAGGTTTAGATCCTGTTCTTGTAATCTATTCTAGTTCACGCTGCTAAACTCACT TTAATGTCAGACTGTAGTTGATAGCAAAGTAGTTGGTCAAAAGTTTCGGTTAAGGTTGGAAGCTCTGTAAAGCAGGTACC TTTCTCCCTTAGCATGCTCTTTTAATTTTGAGAAATCAGATTATTAGAGTTTGAATGGTTTGAAAGGGTATTTCTTTTGA ACAATTTTAACAGTATCAATTTAATTATTAAAAGAAGTTTATGTATCAAATATTATACATTTATGTTTGGATCGGCTCGT CTTTCCTCTCAATCAATTCTGGCACTCGGAAGCTACTCATAGAAGCTTCTCTCCAGAATTGATTTTGACTGCATAAACAA TAGTTGACAGATTTCCAAGCATGCTCTTAACCTTTTTTGTGTGCCTATAACTATGTAACAGCTGAGCTGACATACAAGAG TATGCAAATATATGAGGATTTGAAGTTCTTTGAGCATTCAGTGTTTGTGTGGGGAGAGATTTGGACAGAAGCCAGAATGC AAGGAGGTTATATTCCACCTTGGAAAATGGGTTCATGGCATGGGTCAGAATTAGAGAATGTGCAGGAAAATGATGAGCTC AAACTGGTTCCATCGTTATTACCAGCCATACCTCAGCCACCAACACCACATGAGCCTATGGAGTTCTTATCAAGGTCATG GAGCCTCTCTGCTGCGGAGATTTCAAAGGCTCTTATGGATAAACAAAAGCAAACTTTCCATGATAAGAATCAAGCTACGT TGCCAGAAACTATTTTGACACCTCCTCTAGTAGTAAGTCATGCTCCTCATACTCTCTCCTCTTCTCATCTCAGTGATGCC CATTTGCATCAATCATTGATTGAAACTGATGATAGCATGTTTGGAAATCCTTTTGCAATTGATTCTAAATGCAAAATCAA TTCTGGGTGAGAACCTTTTGGTACATGAATTACTTCTCATAAAAAATAAGTTGATCCAAACATGCTAAACTTGATGATTC TTACAAGTCCAAATGCCAAAAATCTGAATGTGTTTTGAGTTGTAAGAAATTTTTTGCTGCCAAAATTTCCTGATGATTTC TAACCAGTCCAAATGACAAATATATTCGATTTTGTGTTTGGATACCAGTTGAGTGAACATGAACAGACTTTCAACCTAAT CTATAAGAAGAGTTTCATTCACTTTTTATGTCAAAAGTGAGTGCTAAGTGCTAACATTCGTTTATACTGCTGCCAATGGT ATCCAAACATAATCTTTTTAAATCTACAAACTCTCAGAACTTTGAAATTCACAAAGCATGAAAACGTGTTGCAATGTGCT TTTGCCTATTCTCTCCACACTACAAGTTTTTTAATCCTTTGTGTTGCAGAGAGGCAAGAACATATCTTCTGCTAATTGTC CAAAGATGGGTGCCATTGGAAAATGGTTTCATCAGAAGCAGCAGCAGCATGGGAATGCTAACATCACTGTGAAGAAGAAA GACCGGGAACGCGTAGAAAATGCCCGTGTGCATTCTGCTCTGTCCATTGCTGGGCTAGCTTCAGCATTGGCTGCTATGGC TGCAGCAGAGAACTCTAGTGGCTCTCATTCAAAGTTGAACTTTGCTCTGGCTTCCGCTACACAACTCTTGGCATCCCATT GCATTGAAATGGCTGAACTAGCCGGAGCTGATCGTGGCCGTGTCACTTCTACCGTGAAGTCTGCGGTTGGTATTAGAACC CCGGGTGATCTAATGACTCTTACAGCTGCAGCTGCAACAGGTACTTGCTTACGGCTCTTTTCCTCATAATAAATCCGGTG TCCATAAGCTACTCATATAAACTTCTTTTCAGATTATAGTGTATAAGGATTTTCAAATATGCGCTTAGTGTTAGAAATAT AATCTAAAATTATCCATGTACAAAGATTTTCTAACTGCTTAAACTTTTAGAAGCCTCTATGATCAAGTGATTTAGAGTTT AATCATTGTTGCCCTCATTATTCTAGTAAGAAAATTGAATTTCTGCACAATGTACATGAGCATATGCATTGTCCATGCAA AAATCAATTATCACTCACGAGTTATCACGCGGCTTAACAGTTAGTTCGTGATAATTAGTTTGTTAACTTGGCAAGTGTTT GTAAGAGTTGCTTTAGAAAATGAGCAATTGTTCATAAGTCTATATGAAGCATCTTTATTTCTGTTGAGAATTCAAGTGCG GAGTTGGAGTCCCACATTGGTTAAGTTTGGGTGAGGAGAAGACTTTATAAGATATGTGACTCATAAGCCTAATGCCTTAA GGTTTTGGGTTAAGATTTGGGGTCCAAGATTTTTGAGAATTCAAGTGCGGAGTTAGAGTCCCACATTGGTTAAGTTTGGG TGAGGAGAAGACTTTATAAAATATGTGACCCATAAACGTAATGCCTTAAGGTTTTGGGTTAAGATGTGGCGTTGGGCTCC CCTGTCTCTCCCAACAATTTCTTTATTTCTTTTTTGCTATGCTAAATCAGCTTTGCGAGGAGAAGCAGCTATGAGAGCAA GATTGCCAAATGAAGCAAAGAAGAATGCATCTATAAGTCCACATGATAGGGGACTACCACAGTCTCCTCGGCTTAAAGGA CAGAAATGGTCACATCATCCACCATATGTAGGAGATTTGTTACAGCTCACAAGAAAAGGTGATAATAACAAAGCCATTCT CCATTACAGCCAAGTTTTAATTTTAAAGATTCTGATATATTTAAATGTCTGTCATACATATATATGATCTTTTCTTTAGA ACTCATACATATATATGATCTTAATAGACCACAAGTGACTGGTTCAAGTGATATATATTTTATTTCTCTTAAGCGAGATC TCGATTTTGAGTCTTATGTATTAAAAATAATCTTTGTTAGAAGAGTTAGTCTCACTAAGATATGAATGTTTATGACTCGA ACAAGATTATCTCCCTAGACTACATGTGTTACACCAAGAAAAATATGACCTTAATAGAAATTTGCTGTATTGGATATGAT TGTCATTATTTCTAAGGCTGCTTTACTTTTCAGGAACATTAAGATGGAAGCATGTTTCTGTTTACATCAACAAGACATTT CAGGTATATTAAATTAAATCCAGGCATAAACAAATATCCATGTAATGATAGTTTGGTTCACAGTGATGGAAGCCTGTTTT TGTTGATCAGGTCAAGATCAAGATCAAAAGCAAACACATTGGAGGAGCTTTCTCTAAAAAGCATAAATGTAAGCAGTTTT AACATAAAAAAAACTCAAACGAACTGCGTCCCTACCTCTTTCCAAGTAGCTATTTTGGCATTATAAAAACACTTTTCTTC TTGATTTAAGCATCAAGAAGTTTCTACTTTGACCTTTTGCATTTGTGTTTTTGGAGTTTGGTATTAATCAACACAACATT TATTATGTAATAGGTGTGGTTTATGGAGTCTCTAATAAAGATGGTACTTGGCCATTCATAGAAGAAAAGGAAGCATCTGA AGAGTTCTTCTACATTGTCTTCAAAACTGCACAAGGTCTTCTGGAGTTTAAGTGCAAGAGTAAACTCCAGAGACAGAAAT GGATTGATGGGGTAGAAAGTCTACTTTGTCGAGTCAACTATGTTGAAGCAACAGAGCACTCTCTAGAATTTCTAAGTATG AACACCAACATATGATTGATTTCGATTGTGTTGTATTATGTTCTATGTATATGTATGAGTCATGAAGAGGAGGACATCAA CAGTTTTGGCGAACACTTGTATTCTTATGCTGGCGATACCACACAAAAGAAAAGAATGATGTTCACTTTATTTATTTTTG AAGATCATAATGGGGTATATGTAATTGAATTTATGTGAAGTTATCTGGAGTGAAAGATAACTGCTTTTCGACTTGCTCTT TCCCACACACTTAATTGCTCAAGATGCTGGTAGAGTTCTTTGAATGTAGGACAGTTTGATTGGCTCAAGTACCACTAATG TGATAGAAATGAAAACAGAACTAATAAAAAGCATGAATATGAAAGTTGGATACTGTATAAAATAATTTAAATCACTTCAT TATCTATAACTACTACAAAGGGATAACATTTTTG
CDS sequence (LotjaGi4g1v0201900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATATATGAGGATTTGAAGTTCTTTGAGCATTCAGTGTTTGTGTGGGGAGAGATTTGGACAGAAGCCAGAATGCA AGGAGGTTATATTCCACCTTGGAAAATGGGTTCATGGCATGGGTCAGAATTAGAGAATGTGCAGGAAAATGATGAGCTCA AACTGGTTCCATCGTTATTACCAGCCATACCTCAGCCACCAACACCACATGAGCCTATGGAGTTCTTATCAAGGTCATGG AGCCTCTCTGCTGCGGAGATTTCAAAGGCTCTTATGGATAAACAAAAGCAAACTTTCCATGATAAGAATCAAGCTACGTT GCCAGAAACTATTTTGACACCTCCTCTAGTAAGAGGCAAGAACATATCTTCTGCTAATTGTCCAAAGATGGGTGCCATTG GAAAATGGTTTCATCAGAAGCAGCAGCAGCATGGGAATGCTAACATCACTGTGAAGAAGAAAGACCGGGAACGCGTAGAA AATGCCCGTGTGCATTCTGCTCTGTCCATTGCTGGGCTAGCTTCAGCATTGGCTGCTATGGCTGCAGCAGAGAACTCTAG TGGCTCTCATTCAAAGTTGAACTTTGCTCTGGCTTCCGCTACACAACTCTTGGCATCCCATTGCATTGAAATGGCTGAAC TAGCCGGAGCTGATCGTGGCCGTGTCACTTCTACCGTGAAGTCTGCGGTTGGTATTAGAACCCCGGGTGATCTAATGACT CTTACAGCTGCAGCTGCAACAGCTTTGCGAGGAGAAGCAGCTATGAGAGCAAGATTGCCAAATGAAGCAAAGAAGAATGC ATCTATAAGTCCACATGATAGGGGACTACCACAGTCTCCTCGGCTTAAAGGACAGAAATGGTCACATCATCCACCATATG TAGGAGATTTGTTACAGCTCACAAGAAAAGGAACATTAAGATGGAAGCATGTTTCTGTTTACATCAACAAGACATTTCAG GTCAAGATCAAGATCAAAAGCAAACACATTGGAGGAGCTTTCTCTAAAAAGCATAAATGTGTGGTTTATGGAGTCTCTAA TAAAGATGGTACTTGGCCATTCATAGAAGAAAAGGAAGCATCTGAAGAGTTCTTCTACATTGTCTTCAAAACTGCACAAG GTCTTCTGGAGTTTAAGTGCAAGAGTAAACTCCAGAGACAGAAATGGATTGATGGGGTAGAAAGTCTACTTTGTCGAGTC AACTATGTTGAAGCAACAGAGCACTCTCTAGAATTTCTAAGTATGAACACCAACATATGA
Protein sequence (LotjaGi4g1v0201900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIYEDLKFFEHSVFVWGEIWTEARMQGGYIPPWKMGSWHGSELENVQENDELKLVPSLLPAIPQPPTPHEPMEFLSRSW SLSAAEISKALMDKQKQTFHDKNQATLPETILTPPLVRGKNISSANCPKMGAIGKWFHQKQQQHGNANITVKKKDRERVE NARVHSALSIAGLASALAAMAAAENSSGSHSKLNFALASATQLLASHCIEMAELAGADRGRVTSTVKSAVGIRTPGDLMT LTAAAATALRGEAAMRARLPNEAKKNASISPHDRGLPQSPRLKGQKWSHHPPYVGDLLQLTRKGTLRWKHVSVYINKTFQ VKIKIKSKHIGGAFSKKHKCVVYGVSNKDGTWPFIEEKEASEEFFYIVFKTAQGLLEFKCKSKLQRQKWIDGVESLLCRV NYVEATEHSLEFLSMNTNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 48 | 416 | 369 | 2.6E-150 | – | |
| PANTHER | 48 | 416 | 369 | 2.6E-150 | ||
| Pfam | 66 | 104 | 39 | 3.1E-11 | ||
| Pfam | 129 | 274 | 146 | 4.0E-44 | ||
| MobiDBLite | 263 | 288 | 26 | - | – | |
| Pfam | 297 | 400 | 104 | 2.6E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0201900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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