Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0204700 |
| Transcript ID | LotjaGi4g1v0204700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein; TAIR: AT4G16520.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f; TrEMBL-Plants: tr|I3T1H3|I3T1H3_LOTJA Autophagy-related protein; Found in the gene: LotjaGi4g1v0204700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:47549647..47553553) extracted from Lotus japonicus Gifu genome v1.2.
ATTATATTGAGCTTCAAAGAAATAAATACAAATATAATTAATTTTGCAACAAGAAAGGTGCATGACTTTGGAAACCAGAT AAATAATCAAAATTGATATAAATATTTGGAAAAAAGAGTAATAAACACAGTACCCACATTTTGCTTTCATTGAAGCAAAC ACGCCCTTCTAGGACTTCTGATCATCAACAGATAAGAGCAAGAGCAAGAGCGAGCGTTGATTTTCTTCGATCGTCTTCTT CACGAGGTTTAGTGCACCGAATTTGCAGTGTTATTGAATTTCTCAACCTTTGAGGTTTTGGGTTGAATTATTGTTAATCG AGCAGCAAATTTTCTTCGTCGATATATGAAGTAAATTGTCGGAATCGCTTTGTTGTTTCATGAAATATAATCTGTAAAAT ACTGTGAAGTTTCATCTTTTCCTGAATTCCGTTGATTGTTGAGTTGATTGGAAATTTAGGGCTCTTTTGTTCTACGTTGT ATAGGAAGATTAACGTTCTGTTAGTAGTTCTTTTCTTTCTTTGGTGAAATTTTTGTTTAGGTTTATCTTTCATGTTCTTC TTACCTTTTTTGTGATTATTACTGAGCTGTTGTTTGATAATTTCAGTTTTTTTTTCCACCCAGAAGATGCCCTTTTTTAT TTATTATTTATTTCTAGAAAAGATTTAATTTTTTTGATTGATTGGTTAATTACTTGTTTTTTTGTTAGATGATTTCTTAT TTTAGTTATAATTGACTTTTGTTTGATGCTGTTTCCAGGGAGAATGGCAAAGAGTTATTTCAAACAAGAGCATGATCTTG GTATGTGCTGCTTTTTTTATTTGGGGAGGGGGGGTGTTGTTGCAATATGATCACTTTGATTCTGTGTGTGGAAAGCTGAA TGATGTACAAATAAATGGTTTGTTTTTGTGTCCAGAGAAGAGAAGAGCTGAGGCTGTTAGGATTAGAGAGAAATATCCAG ACCGTATTCCGGTGAGAACCATGTATCTGTTTCTGATGTCATCTGTTTGAATCATATATTTCTTGCAGAAGCAGTGTTGT TATTTTGTGGTTGAGGAGCCAATACTTTTTAATCTCGGTGTATTTTCTTTGGGCCCTGTAAATGTAAATCTTCTGTTTAA ATTTAATTTATGTCTTTTATATGTTGTCACTTGTCTCTTTAGCGTCATGATTGGGCAGTATACATAGCTGGCTATAGCTT GCAGGATCCTTGCTGCTATATTAACAACACTCAGATTAAGAGAAATTAGGTTAATACTCACATATTTGGTATTCAGAATT CAGTGTAGTTCATTGTGGAGATATGCTTTATTGGAAAACTCGTTTTTTAAAAGGAACCAGTGAGACATTGAGGGTCATGG TTTGATTGGTTTAACCTATTAATATTTTGGTTGAAACTGGATAATGTTGAATAAAAGACATAATTGTCTCACAGTCTGAC CTGCTCAACCAGGCAATTTGGCGCAGTTTAGTTTTCTGAACATAATGGAAGTTTGGTTCCATGCCAAATTGGCGTGTATA TTAACTTTTTATTTTATACTCTCTTTTATCTCCATATGTATGTTATCTTTATGGGAAAATCATTTATTGGAGGTCAAATG ACTGATTAATGTCCTATTTGAATTATAGAATGAATCCAATTCATAAAAGAATATTCAAATAATCCTTATTTTACTTATTT CTCTGCATTTGTGTTATCAACGAAGGTTGGATTCAGTAATGGAAGTATCTTATGCTGTCAAAAGTTGCTGCTCTGAACTA GGTTGTTATCAATTATTTTATGATGCAAAGGAACCTAAACAGTTTCATTTGCAATCTGACTTTAATATCATAGGCATATC ATTGAAGTAATTAGGTGTCAGTTTGATGAGATGAGTAATAAACCAGCTGTAGGGATAGGACGATTTTATATTTTCAAGCT GAAACACTGGACATGAAATATCAATTAAAAAGTTTCATGTTAACTTGTGCTTCTACTTGCTGTCTACTGCCTGTGATATT TGAGAATCTACATCAAAGGTAGATCTCTAGTTATTGTGCTAAATTGCTTCTCTATGTGTCTGAAGGTAATTGTGGAGAAG GCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTAAGAATTTGTCAATACTTTCATATAATCTGGAAATATCAC ATTAACTGTTTCTACTCATATGGTTTGTTTCTTCAAAAAGAAAGGAAAGTGTTTCAAGAATTTAATATTATTTGTATTTA AATAAGAGCATAATCTACATAGATTTTGAAAAGAGAGATTTGCTTGTAATACCAATATCTGTTAATACTCCATATATGGC TACAATTATGAAAAAGTGAAGTATGTAGCTTTACAAGCTTGCTGCAATGAAAATGTGTTAGTTGATGGAATTTTCAGAAA ATCCACATCGAATTTGAAGTGTTTATTGTGAAAGTCATGCTCACAAAGTTTCACATACAATTTACAACTTTCAGATTCCA TCAATTGTTTTCAAATCAATATAGAACATAGTTTTCAAAGAAAGGATAGTTAAAAAATTTGATAGCATTCCTGTTTAAAT TTTTTAAAATTTGGCATGGAGTTTTTACATGATAAGTACTTACAATCAATAGCTGGAATTGACGAATTTACTTTTGTGTA AGAACTTGTACTAAATTGATCAAAATAATGCCCTGAATTTTGCATAATATACTATAGCTATAGTTGAGAAATTTGCTGAT ATTGGTGAGTGATGGGTTATGTTATGATTTAATGAATGACTGCCAATTCATGATATTGTGAGTGAATAAAGCTGTAACTG CATTGGTAGATATACTTCTCCATTTTGTGAGAGGACCTAATCTTAAATCAGATAAATAGAATTTGAATCGCTTGTCTATT TTTTTCTAAAATATTGATGTTATGTGAGTGTTTGGGTCTTCTATAGCTTTGTGGTGATGGATTTTCATTTGCAATTGCTT CTGTTAGATTATAACTCAGGTTTCTGGTGGACTAGGTATTATTTGTTTAATATTGCCATTATCTAATGGCTTTCTGCCAG TTGTCGTATAAAATTGGCACTTAGCAGCTGTATGTCCTTTGTTTTAGCTGTCAAGCTGAATGAGTTAATTGTAGGTACCT CGTCCCAGCTGATCTCACAGTTGGACAATTTGTCTATGTTATCCGCAAAAGAATTAAATTAAGTGCAGAAAAGGCAATTT TTATATTTGTGGACAATGTCCTTCCACCTACAGGCAAGTTATTTACCCCTTAAACCTTTTTATCTAAAGATGATTATTTA GTCTCCTAATATATAGCAGTATTGACCTATCAAACTTTCCGGGGTTTCTCAAAATTTTCAGGAGCAATTATGTCTGCCAT ATATGATGAGAAAAAGGATGAAGATGGGTTTCTTTATGTTACTTACAGTGGGGAGAACACCTTTGGAGATCTTACTTCCC ACTAGGATTTTATAGCTTCACACTATATGATCCAATTGCACCGTCATTGTCTTGTCTCATAAATTTGTGATGGTACTCAA TATCAAACAACATTGCTCTCAATGTCATGTGCAGTTGTATATAAATTCCAATAACATGTTCAATGTTAACAAGTTTCCTT GTTTTCAGTGTTTCAACTCTTTTTTTTCGGTTGTTCATCATGCATATCTAGGATGTTAATGCTAACTGCGAAGTGATACT TCAGAGTAGTTTGTTGTTTCAATCAGGAAAAGTAAGTTACACAGAATGGCTAATTGTATAATGGGATTTATCTTATAATA AGCAAATAACAGAACCGCTAATTGTTTAACTTTGCAGGACAAAACTTTTTCTGAGATGAGCTTGCGTATAAAGTGCGAAA TAAGAGTGTACTTATCTTTGAATTTTAATGACTTAAGGTGAAGATGTACTTTCAATCAAAGTTGAAT
CDS sequence (LotjaGi4g1v0204700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGAGTTATTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCTGTTAGGATTAGAGAGAAATATCC AGACCGTATTCCGGTAATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTCGTCCCAG CTGATCTCACAGTTGGACAATTTGTCTATGTTATCCGCAAAAGAATTAAATTAAGTGCAGAAAAGGCAATTTTTATATTT GTGGACAATGTCCTTCCACCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAAAAGGATGAAGATGGGTTTCTTTA TGTTACTTACAGTGGGGAGAACACCTTTGGAGATCTTACTTCCCACTAG
Protein sequence (LotjaGi4g1v0204700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSYFKQEHDLEKRRAEAVRIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIF VDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLTSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 118 | 118 | 4.5E-59 | – | |
| PANTHER | 1 | 120 | 120 | 1.6E-77 | – | |
| PANTHER | 1 | 120 | 120 | 1.6E-77 | ||
| SUPERFAMILY | 3 | 117 | 115 | 1.77E-44 | ||
| CDD | 12 | 114 | 103 | 4.58531E-70 | – | |
| Pfam | 14 | 117 | 104 | 1.9E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0204700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…