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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0204700 |
| Transcript ID | LotjaGi4g1v0204700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein; TAIR: AT4G16520.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f; TrEMBL-Plants: tr|I3T1H3|I3T1H3_LOTJA Autophagy-related protein; Found in the gene: LotjaGi4g1v0204700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:47550410..47553091) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAAGAGTTATTTCAAACAAGAGCATGATCTTGGTATGTGCTGCTTTTTTTATTTGGGGAGGGGGGGTGTTGTTGC AATATGATCACTTTGATTCTGTGTGTGGAAAGCTGAATGATGTACAAATAAATGGTTTGTTTTTGTGTCCAGAGAAGAGA AGAGCTGAGGCTGTTAGGATTAGAGAGAAATATCCAGACCGTATTCCGGTGAGAACCATGTATCTGTTTCTGATGTCATC TGTTTGAATCATATATTTCTTGCAGAAGCAGTGTTGTTATTTTGTGGTTGAGGAGCCAATACTTTTTAATCTCGGTGTAT TTTCTTTGGGCCCTGTAAATGTAAATCTTCTGTTTAAATTTAATTTATGTCTTTTATATGTTGTCACTTGTCTCTTTAGC GTCATGATTGGGCAGTATACATAGCTGGCTATAGCTTGCAGGATCCTTGCTGCTATATTAACAACACTCAGATTAAGAGA AATTAGGTTAATACTCACATATTTGGTATTCAGAATTCAGTGTAGTTCATTGTGGAGATATGCTTTATTGGAAAACTCGT TTTTTAAAAGGAACCAGTGAGACATTGAGGGTCATGGTTTGATTGGTTTAACCTATTAATATTTTGGTTGAAACTGGATA ATGTTGAATAAAAGACATAATTGTCTCACAGTCTGACCTGCTCAACCAGGCAATTTGGCGCAGTTTAGTTTTCTGAACAT AATGGAAGTTTGGTTCCATGCCAAATTGGCGTGTATATTAACTTTTTATTTTATACTCTCTTTTATCTCCATATGTATGT TATCTTTATGGGAAAATCATTTATTGGAGGTCAAATGACTGATTAATGTCCTATTTGAATTATAGAATGAATCCAATTCA TAAAAGAATATTCAAATAATCCTTATTTTACTTATTTCTCTGCATTTGTGTTATCAACGAAGGTTGGATTCAGTAATGGA AGTATCTTATGCTGTCAAAAGTTGCTGCTCTGAACTAGGTTGTTATCAATTATTTTATGATGCAAAGGAACCTAAACAGT TTCATTTGCAATCTGACTTTAATATCATAGGCATATCATTGAAGTAATTAGGTGTCAGTTTGATGAGATGAGTAATAAAC CAGCTGTAGGGATAGGACGATTTTATATTTTCAAGCTGAAACACTGGACATGAAATATCAATTAAAAAGTTTCATGTTAA CTTGTGCTTCTACTTGCTGTCTACTGCCTGTGATATTTGAGAATCTACATCAAAGGTAGATCTCTAGTTATTGTGCTAAA TTGCTTCTCTATGTGTCTGAAGGTAATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTAAG AATTTGTCAATACTTTCATATAATCTGGAAATATCACATTAACTGTTTCTACTCATATGGTTTGTTTCTTCAAAAAGAAA GGAAAGTGTTTCAAGAATTTAATATTATTTGTATTTAAATAAGAGCATAATCTACATAGATTTTGAAAAGAGAGATTTGC TTGTAATACCAATATCTGTTAATACTCCATATATGGCTACAATTATGAAAAAGTGAAGTATGTAGCTTTACAAGCTTGCT GCAATGAAAATGTGTTAGTTGATGGAATTTTCAGAAAATCCACATCGAATTTGAAGTGTTTATTGTGAAAGTCATGCTCA CAAAGTTTCACATACAATTTACAACTTTCAGATTCCATCAATTGTTTTCAAATCAATATAGAACATAGTTTTCAAAGAAA GGATAGTTAAAAAATTTGATAGCATTCCTGTTTAAATTTTTTAAAATTTGGCATGGAGTTTTTACATGATAAGTACTTAC AATCAATAGCTGGAATTGACGAATTTACTTTTGTGTAAGAACTTGTACTAAATTGATCAAAATAATGCCCTGAATTTTGC ATAATATACTATAGCTATAGTTGAGAAATTTGCTGATATTGGTGAGTGATGGGTTATGTTATGATTTAATGAATGACTGC CAATTCATGATATTGTGAGTGAATAAAGCTGTAACTGCATTGGTAGATATACTTCTCCATTTTGTGAGAGGACCTAATCT TAAATCAGATAAATAGAATTTGAATCGCTTGTCTATTTTTTTCTAAAATATTGATGTTATGTGAGTGTTTGGGTCTTCTA TAGCTTTGTGGTGATGGATTTTCATTTGCAATTGCTTCTGTTAGATTATAACTCAGGTTTCTGGTGGACTAGGTATTATT TGTTTAATATTGCCATTATCTAATGGCTTTCTGCCAGTTGTCGTATAAAATTGGCACTTAGCAGCTGTATGTCCTTTGTT TTAGCTGTCAAGCTGAATGAGTTAATTGTAGGTACCTCGTCCCAGCTGATCTCACAGTTGGACAATTTGTCTATGTTATC CGCAAAAGAATTAAATTAAGTGCAGAAAAGGCAATTTTTATATTTGTGGACAATGTCCTTCCACCTACAGGCAAGTTATT TACCCCTTAAACCTTTTTATCTAAAGATGATTATTTAGTCTCCTAATATATAGCAGTATTGACCTATCAAACTTTCCGGG GTTTCTCAAAATTTTCAGGAGCAATTATGTCTGCCATATATGATGAGAAAAAGGATGAAGATGGGTTTCTTTATGTTACT TACAGTGGGGAGAACACCTTTGGAGATCTTACTTCCCACTAG
CDS sequence (LotjaGi4g1v0204700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGAGTTATTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCTGTTAGGATTAGAGAGAAATATCC AGACCGTATTCCGCGTCATGATTGGGCAGTATACATAGCTGGCTATAGCTTGCAGGATCCTTGCAATTTGGCGCAGTTTA GTTTTCTGAACATAATGGAAGTTTGGTTCCATGTAATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAG AAGAAGTACCTCGTCCCAGCTGATCTCACAGTTGGACAATTTGTCTATGTTATCCGCAAAAGAATTAAATTAAGTGCAGA AAAGGCAATTTTTATATTTGTGGACAATGTCCTTCCACCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAAAAGG ATGAAGATGGGTTTCTTTATGTTACTTACAGTGGGGAGAACACCTTTGGAGATCTTACTTCCCACTAG
Protein sequence (LotjaGi4g1v0204700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSYFKQEHDLEKRRAEAVRIREKYPDRIPRHDWAVYIAGYSLQDPCNLAQFSFLNIMEVWFHVIVEKAERSDIPSIDK KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLTSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 31 | 31 | 6.2E-71 | – | |
| PANTHER | 1 | 31 | 31 | 6.2E-71 | ||
| SUPERFAMILY | 3 | 150 | 148 | 1.72E-38 | ||
| CDD | 12 | 147 | 136 | 2.19906E-66 | – | |
| PANTHER | 64 | 153 | 90 | 6.2E-71 | – | |
| PANTHER | 64 | 153 | 90 | 6.2E-71 | ||
| Pfam | 65 | 150 | 86 | 9.5E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0204700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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