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LotjaGi4g1v0204800.1

Overview

Field Value
Gene ID LotjaGi4g1v0204800
Transcript ID LotjaGi4g1v0204800.1
Lotus japonicus genome version Gifu v1.2
Description YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein; TAIR: AT4G16510.1 YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein; Swiss-Prot: sp|Q8I1F6|PPO3_DROER Phenoloxidase 3; TrEMBL-Plants: tr|I1K0N8|I1K0N8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0204800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:47554266..47558772) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGAAGTTCTAAAACTCATCAATCCATGATGCATATCTTTGAATTTTGAAAGGATGCGTTGTCATGATAAATCTCCTT ACTTCCTACTTCTCCATGGAAACATGGAGGATCAATTTCTTCCTCTCTACTTGGGAGATAAAGGGAGTTCAACTCTCCAT AATATAATATCTACTCGCCAAAAAACCCACGAAAAAATACTAGTATAGGGAATGAATGAAATTACTAAACTACCCTCTCT AACTCCAATTCATTTTCTCTCATTTAAGAGTAAAGTTGTCCATTTACATTGATGCCCTCATACACCATATTCACTTTTAT CAATCTTATACAAAATTGATAGACGACAAGAACTGGAAGGAGGAGCACGACGCAGCCATTGATTTCTGAGTTGTGAACAA AACTCGGCGCGAAGCAATGAAAACGGAAGAAGCCATGGCTGAGTTGGAGCGAGTCCAAACCCACCTCCTCCAACGCATCT CAAAGCTCGAGCATTCTCTTCTCACCGACGACCCTAACACTCACACTGACACTAACACTGACGACACCGTCGCTCGCCTT TCTTCCATTCTGCGCACCAACGGCGTCGACGACTTCTCCTTCAAGAGGGTCCCATCCGACTACTACGATTCGCCGCTCGA AGTCCGCCGCGATGCCCTCGCCGCCGCCTCCATTCACCACCTCTGCAAGAGCATCGTTCTGGTCAACACGCAAGCCCCAT CAAACGTTGTTGATTGCAGCGATCGGAAAAATTCAAAGTACTATGTTGTTATTGTTCAGGTCCCATTGCTTTTGCTTCTT ATCTTTTTTCATTTTCTTTCTTCTCGTCTTCATGTTGCTCTGGTAACTCTATTTGCTTGAATTTGCAGTACACTGCTCGG TTCAATGCTGAGGCTGTGAAGAGCTTTCTGTTCTCGCTCAACAATGGAAGTATAGCCAAGAAGAAATTCAATTGTAAGCT ATTTGGTTCATAGTTTGTTCATAGCTATTTATTGATGTTGTATTGAATCCCTGAGTTTTTTTAGAATTGGGTAACCGTGA TTAATGATAATATGAAATTCTGTTGAGCATTGTGGCATTGAAAGAACTAGGAATTCCGTTTGTTCGTGATTCGTGAAGTA ATGGTGGTGGCGGAAGAACTGAATATAGTGCTTGGGATATGAGACCCTTCTCACAGTTGCTACACTTAAGAAATTGGCCT GTGTGTGTGTGTGCATTTGTTGTTTCTTAAGTTATGATTTTAATGGAGAGTCCAGGTAGAGTTGGTTAAGGAGGTTTCCC TGCTACATATGAGTTTTCCTGTCTTAGTACTTTGAGTCCATGAGCTTCTTTGAATTGAGCATAATAGGGGAACATTATGA CTTGCACATGAGTTGAGTGGGATTTTCCAACACTGAAGCCTCCCCTGCCGTCTTGTTCGCAACAGCTTACAGCACGGATT GCTTGCTTGTCAAGATAAAACCTAACAGCTATCCTTGCTTCGTACTGCCTGTTTCCCATGGCAACGGTCTTCCCTTTCTC TTGCTATCTCAATTTCACTGCCCACTATTGCTGTAATGCCAATTATCAATTCATTGATTAAATTAAGAAACTAACTTATG CAGGATTTGTCTTTGACTCATTGCTGTTATGTTGAAACTGGGTCAGGGTCAAGGAAAGCCCTCAAGATTTGTGATGTGAG AGGTACAAAGGCTGAATCTTCTCTTATAGTTGTAAAGCATGAAATGTCATTGAAGGTAGAGACTTGGAATTGGCGGTTTT CCCAGAAACAAAATTTGAAGTTTTTCTTTACGGTGCTGGGTGGATTCCATGAGTTGTTAGGAGTGTGTTGCAGCAACTGT TAGATGCATGTGATGGGATTTTGGCATGATTAGAAGATCACTGAGGTTAGGCGAAGTAGTTCAAATCCCTTAACATGGGA GGAGGGTATTTGGCAGCTTAGTGGTTACAGTTTTCAGTTGCTATCAAATCCAATGTATGAAAGTTTCAATTTTGAGTTGT CTACTGTAAATACTAACTAGCAATAGCTGGAGTGAATATTCTCACTCATTGAATTAGCTTTTAATGAGCTACATTGTCTC AGTTGACACTGGAGGGGAACTGAGACCAGAAACCCTCGATATGTAATGGTTTTTGCATGAAAATTCTAAGTGGGTGATAT GTGAAAACAATATATGAGAAGTGAAAAGTATGGGAGGTCCACCATACTTGCTGATACCCATCACTTTGTTGTACTGCTTC CACTTCTCTGAACTCAGTATATTTTCCTTGTTAAATTTTTATTTTAAATAATGTAATCTCTGTGTTCTTAAGGACATTCT ATCTCTCCTTATTAATCCTTTATCTTTTATTCCTTTTGTTAATATTTATGGAAAATTCTAATGCTTTCTATTTTCCCTTT TTAGATTTTCTATTTATTATATTTTTAACTTGACATTGATTAGAAGGTAGTAATTATTATTATTATTAATTGCAGTGAGG CTAGCTCCTGAGGAGACATCAACGGAGTTAACTGGATTTGGGCACAATGCAGTGACTTGTGTCGGCATGAAAACAGACAT TCCGGTAAAGACTGGACCTGTGAATTAGTATAGGAATCTTAATCATGTGATATATGTAAATAACTAAATATTGCATCTTG ACAAGAACTCTGTCACAAGTCCTTATTAATGCTGAAATGGTCATTTTCTTTTTAGCTTAGTGTATACAGATTATGTGATC TTTCTGATTACATCTATCATTTACGAAGTTTTTTTCCTGACTTATCTTCACATGTTCTGTCCTTTTTGATATCTTGTACT GGCACTTAAACCTTCTTTTTCCGCAATCTACAACTGGACACAACCACTTTTTCCCTGATGTTACGTTCTGACTGAGGGTC CATCATTCTTTTGAGAATGTCCCCTAGGATCTATATCGTCATGGAGCATCTGTGTAAAGTCTGAAGTCGTCCTTCCCATC TTTGTTCCAGCTTTTTCGCTGGTCCATATCTCTTTCTCTGTCTTTCCTTCTAAACTTCAGGTCTGGAGAGACTGGAAAAG GTATGTGATGGAGTACACTGAATTGTTTTATTCTTGAACTCAGAAGTCACCCATAATACAACAATAAACTGGCTGTTCCA GAGACCAAGGTGTCTGACATAGAGTGCCCTCTGTCCATAATACAGATTAACAACAGAACATGCATAATTACGCACCCTAC TACCGCATATACTCCTAATTAGTAATTGCCAGTAGTTATTTTTAATCATAACTACTACTCAGGAGTTCAGCCACTAACTG CTGTCACTAATTAACTCTAATTATTTCCTATGATGGAGGCATGATACTCATTTAAGCTTAAGTACTTGAAACATGTCGAG CATATGACCTAACTAGAATGGAATGAATGTAAAACCAGACATTTCCTCCTAAGACAGGTCAAATTTGAGAGATACCTTAC CACACACACACACCCTTTTGTGAATAATGTTCAAGGACTCAAGGTCCGCTTATTAATTAAAACATTTCTTCTGTTATTGC ATTATATTCAAATCATAATTCATTCTCTTCTCGAGTTATATACCATTGTGGCTTATCTATAGTAATGTAGCCTTCAGCTT CTTCCTTAATTGATTGGATATCATGGATTGATTCAGGTGATTCTGGATGAAGCTATTGTAAAACTAACTCCAGATTTCTT TTGGTTGGGTGGCGGTGAGGTTGATCTGAAGCTAGGGATCCGAACATCTCAATTAATCAGATTTATCAACCCATTCATCG TCAATTGTAGCAGTGGTTGATTTTGTTGGTTAGAATGTGGTCAGGATGATGAGTTTACGAGGCTGGCTGTCATTTGCAGC TTATTTTTATACGATTTGAAGTTGAATTGTCGTCCATGAGGAATATATTTATTTGTCATAGCGAGTTTTAAGCTCTGCTT TAGTGATTGTAATGTATGTTTTACAGAGATTTGAAGGCAACCAGCAGCATGACTTCATATTTTGTATTTGTTGAAAGTTA ATAATATCATCATAAAGATAAGTTAGCTCCTTTTTATTCTGATTGAACCATTTCACTTTCAGATAATGAGAGGGCTATGG TGGTATACGCCGTACTTATGAATGTCCTAGCCATGAAGAGATTTAAAATTCTAAGTCCTGGAGCATAAAGCTTTGGATAA GATAAATGTTGATGATAGAAAATAGTAATAACTGTAATTTCCCGTTTTCAGGGATGTGGATGATTAGTCAACAAATCCAT GTCTTATCTCTTCTATAAGAGAATATTTGTATTTTGTTTTCCTGAAATAATTTTCAATATCCAATTGTTTGTCAAGTTGG TATTAGAGCTACATGCATAAGAATCTAAGGACATGGATCTCTTTCATGTCTATGAATGGAAATGTGATGTAGATGCTATT CATTATAAGAACATAAGGAGGAAATAGAATCTTCAAGTTTCTTGCTGGACATGACTCTGAACTATATGAGGTGGGAAGAA GTATGATTGGTAGGATATATACCTCTT 

CDS sequence (LotjaGi4g1v0204800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAACGGAAGAAGCCATGGCTGAGTTGGAGCGAGTCCAAACCCACCTCCTCCAACGCATCTCAAAGCTCGAGCATTC TCTTCTCACCGACGACCCTAACACTCACACTGACACTAACACTGACGACACCGTCGCTCGCCTTTCTTCCATTCTGCGCA CCAACGGCGTCGACGACTTCTCCTTCAAGAGGGTCCCATCCGACTACTACGATTCGCCGCTCGAAGTCCGCCGCGATGCC CTCGCCGCCGCCTCCATTCACCACCTCTGCAAGAGCATCGTTCTGGTCAACACGCAAGCCCCATCAAACGTTGTTGATTG CAGCGATCGGAAAAATTCAAAGTACTATGTTGTTATTGTTCAGTACACTGCTCGGTTCAATGCTGAGGCTGTGAAGAGCT TTCTGTTCTCGCTCAACAATGGAAGTATAGCCAAGAAGAAATTCAATTTGAGGCTAGCTCCTGAGGAGACATCAACGGAG TTAACTGGATTTGGGCACAATGCAGTGACTTGTGTCGGCATGAAAACAGACATTCCGGTGATTCTGGATGAAGCTATTGT AAAACTAACTCCAGATTTCTTTTGGTTGGGTGGCGGTGAGGTTGATCTGAAGCTAGGGATCCGAACATCTCAATTAATCA GATTTATCAACCCATTCATCGTCAATTGTAGCAGTGGTTGA 

Protein sequence (LotjaGi4g1v0204800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKTEEAMAELERVQTHLLQRISKLEHSLLTDDPNTHTDTNTDDTVARLSSILRTNGVDDFSFKRVPSDYYDSPLEVRRDA LAAASIHHLCKSIVLVNTQAPSNVVDCSDRKNSKYYVVIVQYTARFNAEAVKSFLFSLNNGSIAKKKFNLRLAPEETSTE LTGFGHNAVTCVGMKTDIPVILDEAIVKLTPDFFWLGGGEVDLKLGIRTSQLIRFINPFIVNCSSG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 7 225 219 1.2E-84
PANTHER 7 225 219 1.2E-84
Gene3D 40 224 185 1.6E-27
SUPERFAMILY 60 223 164 3.66E-21
CDD 79 221 143 5.11521E-20
Pfam 86 215 130 1.5E-8

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Aminoacyl-tRNA editing activity The hydrolysis of an incorrectly aminoacylated tRNA.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0204800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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