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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0209200 |
| Transcript ID | LotjaGi4g1v0209200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | YABBY protein; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|I3T6R2|I3T6R2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0209200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48602055..48605684) extracted from Lotus japonicus Gifu genome v1.2.
CAACACCCTCCTTCCGAGCAACTTTGTTATGTCCATTGCAACATATGTGACACCATCCTAGCTGTATATATGAAAAACTC AAACATCATCATCATTCATTTTTATTCCAACTTTATTCTTTCCTAGCTAGCTAGGGCTTTTCTTCCCTATTATAAATTGT TCATTGTTTCTCAAATGTTGTTGTGCATTGAACATTTCCTCTTCATCATTTCAGGTGAGTGTTCCTAGCACTAGCTTGTT CAAGACTGTGACTGTGAGATGTGGTCATTGCACTAACCTCCTTCCGGTGAACATGAGGGCATTGCTGCTGCCATCACCCA ATCAATTTCATTTGGGTCACTCTTTCTTCTCCCCACCCCATAACCTTCTGGTAAATGTCTACAATCCATGACTTCGGTTT GTTCCTCTTCACTCTGCGTCTCTTTGATAAATCAGTGCAAGCATGCATAGCTAGACAAGATATATGATTATTGTTACCCT CAAGTCATGTATGTAACAACTGTAATCATAAACTCAAAAATTCAAATTACCTACAGCACACACCTCAATTTTCTCTCTAT CTCTCGGTTCTATCATATCTTATTTTCCTTCTATTTTCTTCTCACTCTAGGTGTTTGTCTGTTGGATGTTTGCGTTGTAC GAGAGTGTCTGAGATCATTTTCCATATAACAATTAATTTCTGTTTAAGAAATTTTAATGCCAAGAGATAGGGAGTTTATA TGTTGATCCTCATGTTTGGTTGGTGATTCTTTACTTGCAGGGGGAGATGCCAAACCCGTCTCCAAATTTTCTTATGAACC ACACAAATGCAACAAGTAACTTCTCTCAGTTCTCTGTGCCTGCTAGATCTGCAGCTGATGAGCTTCCCAGGCCACCGATC ATAAATAGACGTGAGATTCAAAATTTACTATTTTATTTGACATATATGCATGGCAGGTAGAGTAGAATGATTGTCTTCAG ATTTCCGTTGAACTCAAAATTAATCTAAATTGAACTCAGCCTATCAAAATTTAGGTTTTCTCTATTTGTTCTCAAGTTTT GCTAATTTCTGTTTTGAATCAAATCTGTTCTGTTGCTTCTAGATTCTTTTTATTTATCTAATTAGCATTGATGCAAACAG AAAATCAAACACATCAGTTTTCTATTAGTCAAAATGATGGTTCCCATAATTGTATTTTTCATAGCATGTTTAGTTTGAAG TTTAAGTATGCACAACGAAAAATCAAGGTGAATTGAAAATCACAATGAACACTCATACAAGTTAAAAGTTAACTTTGTCT TGTGTGATTTTTTAACATATGGTGTATCCAAACATGCACTAGCTAGACTTTTCAAAATCACCAAAGCTATAATTCGAGTA GGTTCTCTCTTAGATCTTTTCCCTATGAGAAAATCTACTAGCATTCATTAGTAAACTAGACTACAATTTTTGGAAAACAA AACACAAGGCCGTTACTTTTAATGTCGCTGTATAGTTACAGTTTTAACCAGGTACTTTAGGTCCAGTTCCGTTGGTAAAA GAAAAAGGATCTTTTAAGGCATCAAAGTGGTGACATTGATGCAAACAGAAAATATGCAAACAAGGAAAAAGGATCTCCTT CCTTGTTTTTGAGTGTACATGCCCTGAAAAATTTAACCATACTAACAAGCTATGACATGTTTTAGAGAATATCTTCACCT TAGTTAAGCCTAGATGCAAAATTTTATCAATCTCAAGAAGGAATACTGGTAACTTGATTCTAGCTAGCTAGAGCACAGTC TGCTTTCACCAGGCTATGTTTCAGTTTTATTATTTAATTTCATTTTACTTGCACTGACATATTAGATGAAGGAGAAATAT AGTGCAAGTTCTTCTCCCCCGGGATTGTAGTTGCTTAAAACTTATTACACTCAGTATCACTATCATCAGAATCAGAAGCA TAAAGTCATTCAAGAAAAATAGGCAATTAAGTTGAAAATTAAATAAAATTAGTTGTGCCTGAAAGTTAAAAAATGTGATT TTGATATGACTGTGTGCAATGTCCAGCAGCTCCAGAGAAGAGACAGAGAGTTCCCTCAGCATACAACCGCTTCATTAAGT GAGTATTCATTTAAAACCATTTTATATATCATTTTTGTTACGACATTCATTCATGGTGAAATAAATATAAAGTGCCTGCA TCGATCAATGTTATTAGAGATGAAGTAGATCTGATTATCTGAATGGTCCAAAATGAATCTGCAGGGACGAGATCCAACGC ATCAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTTCAGTGCAGCTGCTAAAAATGTATGATCGATTTTGTCATC TTATGCTTTCAAACTATATATATTATATTCAATAAATAAATAAAAATAGCCAAGGTCATGTGTATTTCTCCAAATTTTAC AAAAAGATGCATTTCTCTCTGCCAAAATCATTGAAGTTTTCTAGAAAAGTTATGTAAATTTAGTCTTGGTTTGTTTAGTT TGTTTTATCTTGTTGTTTTATTTGGTATCTTGCATAGGCCTCTATCAGGTTGAATATCTAAATGCTAAGAAGTTAATCGC TCTTGAACTAGTTTAAGAGTAGAGTTTGACTTGCCCAACTTCAATATGGTATCATCATAGCATATTTTGTATTTGTTTAT TGGGTACCCAAGGTCAGGGTCACTTGTATATATCTAATCCTTAAACTTCACACATTAGATGTTCAGTCATGCACGTGAAG AATTGTTGAGAGTTCCTTATTAAGTAAAGATATGATCAAATAAGTTATTTTAAAAATAAGGTAGAATAATCATGACCCCT CTAAACTTGTGCATTTGAGCTAACCAAAATCCAATACTAAAGGTGTTTATTTTTTTTTTGAAACATAAAGGTGTTTGTCA ATAATTCCTTTTAATATGGAGAAAAAAAATAATACGAATTTAGATTCACAAGAATATCCGTGATTTGAAGTGCATGATTT GAATTATTTCTCTGCCGTGTTTCTAGTTTCTAGTTTCTAGTTTCTACATTCAAATAAATGCTATGGTTTCCTAGTTCATT TTGGATTTTTGTTGTGTGACGTGCTCTGTGTGTCAGTGGGCCCACTTCCCGCACATCCACTTTGGTCTCATGCCTGATCA GACTATGAAGAAGACAACTGTGTGCCAGCAGGTAAAAATTATCGATCATGAACCCGCTTCGTGCAAAATGTTTCAGACAA ATAATGCATATATATCCATCTCTGACTTTGATTTCTGAGTCTGTTTTGTTTATGTGTCTTTGATTTGATATGTTCAGGAA GGAGAGGAGGTTCTCATGATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTTTCACCCTACTAATTCACCACCAT GTCAAAAAGGAAAATTTCAACCTTTCAAGCTCAGCAAACTCTGATTTTCCTTAACTTCAATGTGCATCTGTTTGTGGCTG ATGAAGAGTGTTTATGTTGATAGCTAAGGACTACTGTTATTTTCATTAGCTAGCTCTATTAGCATTGTGCATGCATGTAG TTTGCTTCTTAATTAGTAGACCTTAATCTTTTAATGTCATGTTCTTGTATTTCCGCACTACTACTGCAGCTTACTTATCT AGTCAATAATTAGCAACACTTTCTGCTCAC
CDS sequence (LotjaGi4g1v0209200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGCATTGCTGCTGCCATCACCCAATCAATTTCATTTGGGTCACTCTTTCTTCTCCCCACCCCATAACCTTCTGGG GGAGATGCCAAACCCGTCTCCAAATTTTCTTATGAACCACACAAATGCAACAAGTAACTTCTCTCAGTTCTCTGTGCCTG CTAGATCTGCAGCTGATGAGCTTCCCAGGCCACCGATCATAAATAGACCTCCAGAGAAGAGACAGAGAGTTCCCTCAGCA TACAACCGCTTCATTAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTTCAGTGC AGCTGCTAAAAATTGGGCCCACTTCCCGCACATCCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAACTGTGT GCCAGCAGGAAGGAGAGGAGGTTCTCATGATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTTTCACCCTACTAA
Protein sequence (LotjaGi4g1v0209200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRALLLPSPNQFHLGHSFFSPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPPEKRQRVPSA YNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTTVCQQEGEEVLMMKDGFYASANVGVSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 158 | 158 | 6.9E-75 | – | |
| PANTHER | 1 | 158 | 158 | 6.9E-75 | ||
| Pfam | 46 | 122 | 77 | 1.4E-38 | ||
| MobiDBLite | 55 | 74 | 20 | - | – | |
| Gene3D | 64 | 117 | 54 | 3.0E-5 | ||
| SUPERFAMILY | 66 | 115 | 50 | 1.11E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
Expression pattern of LotjaGi4g1v0209200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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