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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0209200 |
Transcript ID | LotjaGi4g1v0209200.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | YABBY transcription factor; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|D3GBU9|D3GBU9_LOTJA YABBY1 protein; Found in the gene: LotjaGi4g1v0209200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48602059..48605978) extracted from Lotus japonicus Gifu genome v1.2.
AAGACCATTAGTTAGAGAAGGGTTATATAATGTGTGTCTACCAGACCAAATAGACCAGCCTCTTTCCCTCTATCTCTTTC TCTGTCTCTCTGCCTGCACCTTTCTTTCACAACTCAATCAAAAAAAGTATATCCAAGGTGGTGGGTGGTTAACCTGTCCA TCTATCAATCAATCAATCACTCAATCACTCAATAGATCGAGAGAGACCAATCATCAAACCGAATATAAGAGAAGAAAAAG GAGCTTCCGAAAATGTCATCATCCAACTCTTCTACCACACTATCACTGGACCACCAACACCCTCCTTCCGAGCAACTTTG TTATGTCCATTGCAACATATGTGACACCATCCTAGCTGTATATATGAAAAACTCAAACATCATCATCATTCATTTTTATT CCAACTTTATTCTTTCCTAGCTAGCTAGGGCTTTTCTTCCCTATTATAAATTGTTCATTGTTTCTCAAATGTTGTTGTGC ATTGAACATTTCCTCTTCATCATTTCAGGTGAGTGTTCCTAGCACTAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTC ATTGCACTAACCTCCTTCCGGTGAACATGAGGGCATTGCTGCTGCCATCACCCAATCAATTTCATTTGGGTCACTCTTTC TTCTCCCCACCCCATAACCTTCTGGTAAATGTCTACAATCCATGACTTCGGTTTGTTCCTCTTCACTCTGCGTCTCTTTG ATAAATCAGTGCAAGCATGCATAGCTAGACAAGATATATGATTATTGTTACCCTCAAGTCATGTATGTAACAACTGTAAT CATAAACTCAAAAATTCAAATTACCTACAGCACACACCTCAATTTTCTCTCTATCTCTCGGTTCTATCATATCTTATTTT CCTTCTATTTTCTTCTCACTCTAGGTGTTTGTCTGTTGGATGTTTGCGTTGTACGAGAGTGTCTGAGATCATTTTCCATA TAACAATTAATTTCTGTTTAAGAAATTTTAATGCCAAGAGATAGGGAGTTTATATGTTGATCCTCATGTTTGGTTGGTGA TTCTTTACTTGCAGGGGGAGATGCCAAACCCGTCTCCAAATTTTCTTATGAACCACACAAATGCAACAAGTAACTTCTCT CAGTTCTCTGTGCCTGCTAGATCTGCAGCTGATGAGCTTCCCAGGCCACCGATCATAAATAGACGTGAGATTCAAAATTT ACTATTTTATTTGACATATATGCATGGCAGGTAGAGTAGAATGATTGTCTTCAGATTTCCGTTGAACTCAAAATTAATCT AAATTGAACTCAGCCTATCAAAATTTAGGTTTTCTCTATTTGTTCTCAAGTTTTGCTAATTTCTGTTTTGAATCAAATCT GTTCTGTTGCTTCTAGATTCTTTTTATTTATCTAATTAGCATTGATGCAAACAGAAAATCAAACACATCAGTTTTCTATT AGTCAAAATGATGGTTCCCATAATTGTATTTTTCATAGCATGTTTAGTTTGAAGTTTAAGTATGCACAACGAAAAATCAA GGTGAATTGAAAATCACAATGAACACTCATACAAGTTAAAAGTTAACTTTGTCTTGTGTGATTTTTTAACATATGGTGTA TCCAAACATGCACTAGCTAGACTTTTCAAAATCACCAAAGCTATAATTCGAGTAGGTTCTCTCTTAGATCTTTTCCCTAT GAGAAAATCTACTAGCATTCATTAGTAAACTAGACTACAATTTTTGGAAAACAAAACACAAGGCCGTTACTTTTAATGTC GCTGTATAGTTACAGTTTTAACCAGGTACTTTAGGTCCAGTTCCGTTGGTAAAAGAAAAAGGATCTTTTAAGGCATCAAA GTGGTGACATTGATGCAAACAGAAAATATGCAAACAAGGAAAAAGGATCTCCTTCCTTGTTTTTGAGTGTACATGCCCTG AAAAATTTAACCATACTAACAAGCTATGACATGTTTTAGAGAATATCTTCACCTTAGTTAAGCCTAGATGCAAAATTTTA TCAATCTCAAGAAGGAATACTGGTAACTTGATTCTAGCTAGCTAGAGCACAGTCTGCTTTCACCAGGCTATGTTTCAGTT TTATTATTTAATTTCATTTTACTTGCACTGACATATTAGATGAAGGAGAAATATAGTGCAAGTTCTTCTCCCCCGGGATT GTAGTTGCTTAAAACTTATTACACTCAGTATCACTATCATCAGAATCAGAAGCATAAAGTCATTCAAGAAAAATAGGCAA TTAAGTTGAAAATTAAATAAAATTAGTTGTGCCTGAAAGTTAAAAAATGTGATTTTGATATGACTGTGTGCAATGTCCAG CAGCTCCAGAGAAGAGACAGAGAGTTCCCTCAGCATACAACCGCTTCATTAAGTGAGTATTCATTTAAAACCATTTTATA TATCATTTTTGTTACGACATTCATTCATGGTGAAATAAATATAAAGTGCCTGCATCGATCAATGTTATTAGAGATGAAGT AGATCTGATTATCTGAATGGTCCAAAATGAATCTGCAGGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATTAC TCACAGGGAAGCCTTCAGTGCAGCTGCTAAAAATGTATGATCGATTTTGTCATCTTATGCTTTCAAACTATATATATTAT ATTCAATAAATAAATAAAAATAGCCAAGGTCATGTGTATTTCTCCAAATTTTACAAAAAGATGCATTTCTCTCTGCCAAA ATCATTGAAGTTTTCTAGAAAAGTTATGTAAATTTAGTCTTGGTTTGTTTAGTTTGTTTTATCTTGTTGTTTTATTTGGT ATCTTGCATAGGCCTCTATCAGGTTGAATATCTAAATGCTAAGAAGTTAATCGCTCTTGAACTAGTTTAAGAGTAGAGTT TGACTTGCCCAACTTCAATATGGTATCATCATAGCATATTTTGTATTTGTTTATTGGGTACCCAAGGTCAGGGTCACTTG TATATATCTAATCCTTAAACTTCACACATTAGATGTTCAGTCATGCACGTGAAGAATTGTTGAGAGTTCCTTATTAAGTA AAGATATGATCAAATAAGTTATTTTAAAAATAAGGTAGAATAATCATGACCCCTCTAAACTTGTGCATTTGAGCTAACCA AAATCCAATACTAAAGGTGTTTATTTTTTTTTTGAAACATAAAGGTGTTTGTCAATAATTCCTTTTAATATGGAGAAAAA AAATAATACGAATTTAGATTCACAAGAATATCCGTGATTTGAAGTGCATGATTTGAATTATTTCTCTGCCGTGTTTCTAG TTTCTAGTTTCTAGTTTCTACATTCAAATAAATGCTATGGTTTCCTAGTTCATTTTGGATTTTTGTTGTGTGACGTGCTC TGTGTGTCAGTGGGCCCACTTCCCGCACATCCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAACTGTGTGCC AGCAGGTAAAAATTATCGATCATGAACCCGCTTCGTGCAAAATGTTTCAGACAAATAATGCATATATATCCATCTCTGAC TTTGATTTCTGAGTCTGTTTTGTTTATGTGTCTTTGATTTGATATGTTCAGGAAGGAGAGGAGGTTCTCATGATGAAAGA TGGGTTTTATGCTTCAGCTAATGTTGGTGTTTCACCCTACTAATTCACCACCATGTCAAAAAGGAAAATTTCAACCTTTC AAGCTCAGCAAACTCTGATTTTCCTTAACTTCAATGTGCATCTGTTTGTGGCTGATGAAGAGTGTTTATGTTGATAGCTA AGGACTACTGTTATTTTCATTAGCTAGCTCTATTAGCATTGTGCATGCATGTAGTTTGCTTCTTAATTAGTAGACCTTAA TCTTTTAATGTCATGTTCTTGTATTTCCGCACTACTACTGCAGCTTACTTATCTAGTCAATAATTAGCAACACTTTCTGC
CDS sequence (LotjaGi4g1v0209200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCATCCAACTCTTCTACCACACTATCACTGGACCACCAACACCCTCCTTCCGAGCAACTTTGTTATGTCCATTG CAACATATGTGACACCATCCTAGCTGTGAGTGTTCCTAGCACTAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATT GCACTAACCTCCTTCCGGTGAACATGAGGGCATTGCTGCTGCCATCACCCAATCAATTTCATTTGGGTCACTCTTTCTTC TCCCCACCCCATAACCTTCTGGGGGAGATGCCAAACCCGTCTCCAAATTTTCTTATGAACCACACAAATGCAACAAGTAA CTTCTCTCAGTTCTCTGTGCCTGCTAGATCTGCAGCTGATGAGCTTCCCAGGCCACCGATCATAAATAGACCAGCTCCAG AGAAGAGACAGAGAGTTCCCTCAGCATACAACCGCTTCATTAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGAT ATTACTCACAGGGAAGCCTTCAGTGCAGCTGCTAAAAATTGGGCCCACTTCCCGCACATCCACTTTGGTCTCATGCCTGA TCAGACTATGAAGAAGACAACTGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGATGAAAGATGGGTTTTATGCTTCAG CTAATGTTGGTGTTTCACCCTACTAA
Protein sequence (LotjaGi4g1v0209200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSNSSTTLSLDHQHPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFF SPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPAPEKRQRVPSAYNRFIKDEIQRIKSVNPD ITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTTVCQQEGEEVLMMKDGFYASANVGVSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 220 | 220 | 3.8E-111 | – | |
PANTHER | 1 | 220 | 220 | 3.8E-111 | ||
Pfam | 18 | 184 | 167 | 4.5E-67 | ||
Gene3D | 126 | 179 | 54 | 6.7E-5 | ||
SUPERFAMILY | 130 | 177 | 48 | 4.84E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
Expression pattern of LotjaGi4g1v0209200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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