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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0209200 |
| Transcript ID | LotjaGi4g1v0209200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | YABBY protein; TAIR: AT2G45190.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|O22152|YAB1_ARATH Axial regulator YABBY 1; TrEMBL-Plants: tr|D3GBU9|D3GBU9_LOTJA YABBY1 protein; Found in the gene: LotjaGi4g1v0209200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:48602083..48605883) extracted from Lotus japonicus Gifu genome v1.2.
GCACCTTTCTTTCACAACTCAATCAAAAAAAGTATATCCAAGGTGGTGGGTGGTTAACCTGTCCATCTATCAATCAATCA ATCACTCAATCACTCAATAGATCGAGAGAGACCAATCATCAAACCGAATATAAGAGAAGAAAAAGGAGCTTCCGAAAATG TCATCATCCAACTCTTCTACCACACTATCACTGGACCACCAACACCCTCCTTCCGAGCAACTTTGTTATGTCCATTGCAA CATATGTGACACCATCCTAGCTGTATATATGAAAAACTCAAACATCATCATCATTCATTTTTATTCCAACTTTATTCTTT CCTAGCTAGCTAGGGCTTTTCTTCCCTATTATAAATTGTTCATTGTTTCTCAAATGTTGTTGTGCATTGAACATTTCCTC TTCATCATTTCAGGTGAGTGTTCCTAGCACTAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATTGCACTAACCTCC TTCCGGTGAACATGAGGGCATTGCTGCTGCCATCACCCAATCAATTTCATTTGGGTCACTCTTTCTTCTCCCCACCCCAT AACCTTCTGGTAAATGTCTACAATCCATGACTTCGGTTTGTTCCTCTTCACTCTGCGTCTCTTTGATAAATCAGTGCAAG CATGCATAGCTAGACAAGATATATGATTATTGTTACCCTCAAGTCATGTATGTAACAACTGTAATCATAAACTCAAAAAT TCAAATTACCTACAGCACACACCTCAATTTTCTCTCTATCTCTCGGTTCTATCATATCTTATTTTCCTTCTATTTTCTTC TCACTCTAGGTGTTTGTCTGTTGGATGTTTGCGTTGTACGAGAGTGTCTGAGATCATTTTCCATATAACAATTAATTTCT GTTTAAGAAATTTTAATGCCAAGAGATAGGGAGTTTATATGTTGATCCTCATGTTTGGTTGGTGATTCTTTACTTGCAGG GGGAGATGCCAAACCCGTCTCCAAATTTTCTTATGAACCACACAAATGCAACAAGTAACTTCTCTCAGTTCTCTGTGCCT GCTAGATCTGCAGCTGATGAGCTTCCCAGGCCACCGATCATAAATAGACGTGAGATTCAAAATTTACTATTTTATTTGAC ATATATGCATGGCAGGTAGAGTAGAATGATTGTCTTCAGATTTCCGTTGAACTCAAAATTAATCTAAATTGAACTCAGCC TATCAAAATTTAGGTTTTCTCTATTTGTTCTCAAGTTTTGCTAATTTCTGTTTTGAATCAAATCTGTTCTGTTGCTTCTA GATTCTTTTTATTTATCTAATTAGCATTGATGCAAACAGAAAATCAAACACATCAGTTTTCTATTAGTCAAAATGATGGT TCCCATAATTGTATTTTTCATAGCATGTTTAGTTTGAAGTTTAAGTATGCACAACGAAAAATCAAGGTGAATTGAAAATC ACAATGAACACTCATACAAGTTAAAAGTTAACTTTGTCTTGTGTGATTTTTTAACATATGGTGTATCCAAACATGCACTA GCTAGACTTTTCAAAATCACCAAAGCTATAATTCGAGTAGGTTCTCTCTTAGATCTTTTCCCTATGAGAAAATCTACTAG CATTCATTAGTAAACTAGACTACAATTTTTGGAAAACAAAACACAAGGCCGTTACTTTTAATGTCGCTGTATAGTTACAG TTTTAACCAGGTACTTTAGGTCCAGTTCCGTTGGTAAAAGAAAAAGGATCTTTTAAGGCATCAAAGTGGTGACATTGATG CAAACAGAAAATATGCAAACAAGGAAAAAGGATCTCCTTCCTTGTTTTTGAGTGTACATGCCCTGAAAAATTTAACCATA CTAACAAGCTATGACATGTTTTAGAGAATATCTTCACCTTAGTTAAGCCTAGATGCAAAATTTTATCAATCTCAAGAAGG AATACTGGTAACTTGATTCTAGCTAGCTAGAGCACAGTCTGCTTTCACCAGGCTATGTTTCAGTTTTATTATTTAATTTC ATTTTACTTGCACTGACATATTAGATGAAGGAGAAATATAGTGCAAGTTCTTCTCCCCCGGGATTGTAGTTGCTTAAAAC TTATTACACTCAGTATCACTATCATCAGAATCAGAAGCATAAAGTCATTCAAGAAAAATAGGCAATTAAGTTGAAAATTA AATAAAATTAGTTGTGCCTGAAAGTTAAAAAATGTGATTTTGATATGACTGTGTGCAATGTCCAGCAGCTCCAGAGAAGA GACAGAGAGTTCCCTCAGCATACAACCGCTTCATTAAGTGAGTATTCATTTAAAACCATTTTATATATCATTTTTGTTAC GACATTCATTCATGGTGAAATAAATATAAAGTGCCTGCATCGATCAATGTTATTAGAGATGAAGTAGATCTGATTATCTG AATGGTCCAAAATGAATCTGCAGGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTT CAGTGCAGCTGCTAAAAATGTATGATCGATTTTGTCATCTTATGCTTTCAAACTATATATATTATATTCAATAAATAAAT AAAAATAGCCAAGGTCATGTGTATTTCTCCAAATTTTACAAAAAGATGCATTTCTCTCTGCCAAAATCATTGAAGTTTTC TAGAAAAGTTATGTAAATTTAGTCTTGGTTTGTTTAGTTTGTTTTATCTTGTTGTTTTATTTGGTATCTTGCATAGGCCT CTATCAGGTTGAATATCTAAATGCTAAGAAGTTAATCGCTCTTGAACTAGTTTAAGAGTAGAGTTTGACTTGCCCAACTT CAATATGGTATCATCATAGCATATTTTGTATTTGTTTATTGGGTACCCAAGGTCAGGGTCACTTGTATATATCTAATCCT TAAACTTCACACATTAGATGTTCAGTCATGCACGTGAAGAATTGTTGAGAGTTCCTTATTAAGTAAAGATATGATCAAAT AAGTTATTTTAAAAATAAGGTAGAATAATCATGACCCCTCTAAACTTGTGCATTTGAGCTAACCAAAATCCAATACTAAA GGTGTTTATTTTTTTTTTGAAACATAAAGGTGTTTGTCAATAATTCCTTTTAATATGGAGAAAAAAAATAATACGAATTT AGATTCACAAGAATATCCGTGATTTGAAGTGCATGATTTGAATTATTTCTCTGCCGTGTTTCTAGTTTCTAGTTTCTAGT TTCTACATTCAAATAAATGCTATGGTTTCCTAGTTCATTTTGGATTTTTGTTGTGTGACGTGCTCTGTGTGTCAGTGGGC CCACTTCCCGCACATCCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAACTGTGTGCCAGCAGGTAAAAATTA TCGATCATGAACCCGCTTCGTGCAAAATGTTTCAGACAAATAATGCATATATATCCATCTCTGACTTTGATTTCTGAGTC TGTTTTGTTTATGTGTCTTTGATTTGATATGTTCAGGAAGGAGAGGAGGTTCTCATGATGAAAGATGGGTTTTATGCTTC AGCTAATGTTGGTGTTTCACCCTACTAATTCACCACCATGTCAAAAAGGAAAATTTCAACCTTTCAAGCTCAGCAAACTC TGATTTTCCTTAACTTCAATGTGCATCTGTTTGTGGCTGATGAAGAGTGTTTATGTTGATAGCTAAGGACTACTGTTATT TTCATTAGCTAGCTCTATTAGCATTGTGCATGCATGTAGTTTGCTTCTTAATTAGTAGACCTTAATCTTTTAATGTCATG TTCTTGTATTTCCGCACTACTACTGCAGCTTACTTATCTAG
CDS sequence (LotjaGi4g1v0209200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCATCCAACTCTTCTACCACACTATCACTGGACCACCAACACCCTCCTTCCGAGCAACTTTGTTATGTCCATTG CAACATATGTGACACCATCCTAGCTGTGAGTGTTCCTAGCACTAGCTTGTTCAAGACTGTGACTGTGAGATGTGGTCATT GCACTAACCTCCTTCCGGTGAACATGAGGGCATTGCTGCTGCCATCACCCAATCAATTTCATTTGGGTCACTCTTTCTTC TCCCCACCCCATAACCTTCTGGGGGAGATGCCAAACCCGTCTCCAAATTTTCTTATGAACCACACAAATGCAACAAGTAA CTTCTCTCAGTTCTCTGTGCCTGCTAGATCTGCAGCTGATGAGCTTCCCAGGCCACCGATCATAAATAGACCTCCAGAGA AGAGACAGAGAGTTCCCTCAGCATACAACCGCTTCATTAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCTGATATT ACTCACAGGGAAGCCTTCAGTGCAGCTGCTAAAAATTGGGCCCACTTCCCGCACATCCACTTTGGTCTCATGCCTGATCA GACTATGAAGAAGACAACTGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGATGAAAGATGGGTTTTATGCTTCAGCTA ATGTTGGTGTTTCACCCTACTAA
Protein sequence (LotjaGi4g1v0209200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSNSSTTLSLDHQHPPSEQLCYVHCNICDTILAVSVPSTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFF SPPHNLLGEMPNPSPNFLMNHTNATSNFSQFSVPARSAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDI THREAFSAAAKNWAHFPHIHFGLMPDQTMKKTTVCQQEGEEVLMMKDGFYASANVGVSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 219 | 219 | 4.2E-113 | – | |
| PANTHER | 1 | 219 | 219 | 4.2E-113 | ||
| Pfam | 18 | 183 | 166 | 1.0E-68 | ||
| Gene3D | 126 | 178 | 53 | 5.5E-5 | ||
| SUPERFAMILY | 127 | 176 | 50 | 2.09E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
Expression pattern of LotjaGi4g1v0209200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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