Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0211900 |
| Transcript ID | LotjaGi4g1v0211900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TVP38/TMEM64 family membrane protein; TAIR: AT1G12450.1 SNARE associated Golgi protein family; Swiss-Prot: sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305; TrEMBL-Plants: tr|K7KN09|K7KN09_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0211900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49341541..49345751) extracted from Lotus japonicus Gifu genome v1.2.
CCCCTACTTAAAAGTAATCCATGCCGTTGCTACACCCGTCACTCCAACGCAATCTCACCCACGCCACGTGTCTATCGACA ACAAAACGGCGTCGCATCACCAACCTCATTCTTTCCCTTCACCGTCACCAAAGCAACAAAAACGAAACGGGAATAAACAG CTTCCAAATTGTTCCTTCTTCACTTTCCTTAACCGACGCGCTTACCCTCTGCTTCGCTTCTCATCATCATCGCCATCGTC ATCGTCGTATTCTTCATCGCTCAATCGCTTCTCGCATTCTTGGTGGTGGTGGTGCTGATGATGGAACTTCAAGCGATTCA CCGCAATTTGTATTCACCAAACATGACCAACCATTGTTGAAAACGATTTCTTCTGATTTTTTTGGTTCTAGCTACCGGTG GTTGTGGATTTTTTCTGATTTAGGGTTTTGTAATTTTTGTGGGTTTTCCGATGACGTATTATGAGGATGAAGGCGGTGGT CGGAGAGTGGAGGTGGTGTGTCAAATTGAGGATAATAATATTAATGGGGACTATGTCAAATTGGGGCCCGGTGCTGTAGA CGATTCTCCGCCAGCTCCTCCTGCGCCGGGGAGAAGATCGGCTCTGTGGTTTTGGGTGAAACTGGTGGTGCTGATTTTGT TCGTGGGTTCGTTGGCTGTTGTTGTGATCAAGTGGGTTGGACCCTATTTCATTGACAAGGTTTGTGCTTTTTCCCCTTAC TTGCTATTGTTGGTCTTGGACTGTGTGCTATGTGTTTTTTGCTGCTTGTTTTTCTCTTGGAAAGTTTTGATTCCATTTTA GAAGTGTTCATTTTTAGTGCTGGAGAATCATTTTTCTTGTTGCCTCTAACATGAAGCACACATAGAATTTAGAATGTTTG TTTTCAGACATCAATTCTTTGCACTCAAGAGAGTTTAATGTGTTTATTTGTCTTAACTATTGTTTACATCAGTGTTGGAT TATAGAATTTATAGTCTTCTGTTGGCTATTTTATTGATGCTATGATTTTTTTATTTTATTTTCAGGAGGTTATTCCAATA ATAAATTGGGAAACTGAGACTTTCAGTACCCCAGTGCTTATCCTTTTGGTATTTGTTTCGGTAGCGCTGTTCCCGACCTT ACTTTTGCCATCTACACCCTCTATGTGGGTGGCTGGAATGACATTTGGTTATGGCTTTGGGTTCTTGCTGATAATTACTG CAGCAGCTATTGGTGTGTCACTCCCTTTTTTCATTGGCTCAACCTTCCATCATAAAATTGAAGTAGGTGCCTGCCTTGTC TTCAATGTTGAGTTTGTTTTTAGTTTCTGTCTATCTGCAGATGTTTGTTTGCGTTACCTGTGCTAATTACGATTCTACGT TCCATGAATCTATGCAGGGATGGTTAGAGAAGTATCCAAAGAGAGCTTCTGTTATAAGATCTGCTGGTGGAGGAAACTGG GTTCATCAGTTTCGAGCAGTTACCTTGATTAGGATTTCTCCATTCCCTTACATAATCTACAACTATTGTGCTGTGGCAAC AAATGTTAAGTATGGGCCTTACATTATTGGATCCTTGGTTGGAATGGTGCCGGAAATATTTGTTGCAATCTATACGTAGG CTCTCTCTTTCTCTCTCTAATACCAATTTTCTTATTACTTGGAATTTGTTTATGTTTTACCTGGTTATTTTTTCACCTAG GTTGATTATTTCTTGAATATCTATTTTTGGCATTTGAAAATTGTCATTTTTGACTAAAAATATAGGTCAGATTTTGCTGA CTTATTGCCATACTGTGGGTATAGATTATGCAATTGGCTTAATAACTATGGCTCTAGCTTGAGTATGTTTAGCAGAATAT GATTATTTCAAGAAAAGACAGTTGTTTACTCTATCCCTTTGTATCTGGTAAAATGGGTTCAGTAGATTTTATAGTTTTAA ATTTTTAATAACCGATATAATTGAGAGTCCTGCAAACTCTTCATCTTGCTTTACCATGTTTTCATGTTTCCCTTTGCTGC AGTATGTTGCTTCCGTGATTCTTCATCATGAAATAGATCTAGAAATGATTTGGCGAATTGATGAATTTTTAATATATACA TAAGTGAGATATTCGTTCAAAATTTGTTTCCATATTTGTGAAGTCTGAAATTGTTCTTGTTTTAGGCTTTTCTTGTTGTA TTTAGCAATATAATTTCTCTAGGTATTCTTGCAACCAAACCCAAGGGTTTGGTTATATTATGTAGAAGTTCATTGACTCA AATGCAGTGTTTAATGTGTGAACATCTTCATAGCATAACCTCTTGTTTTTGTCAACCTTGAATTCAACCGCTAGGAATAT ATTGCGTTGGAGAATCGGTAATTAATATGTGAAGTAGATTCTTGTTCTTCTTGGAGCAGTTGAGTGTTTAGTCCATACTT GTTCCAATCTTCATTTAGATCTTAAGAAGGAATACTATGTATCTCATACAATGTGTGTTACAAACTGTTCTACCTCTTTA TAGAGTTACGAGATTGATCTTTTTCTACGCATAGCATGGGTAGCTTCTTTAATAAATCATATACTGTCTTCTGTCTTATA AATGCAAAGAAACGGTCACCTCTTGTGAAAGTGGTGCTAATAAAAAAGTGCTTACTTGCTCACTCTGTGAAACTTCACTT CCCACTCAGTTCCAGAAGCTAAAAATTGAACAGTTTCGCTGTTCCCCTCCTCTAATACTATTTTTCACCATTTTGTCACC CATTCTATTGTTTCGATGATGCCTTTGACTCAAGTAAGGGTGAACATTACATCTATTCAGCATGCAAGGTTTGGTGGTTA TCAATGTTATTGATGTTTTTTTAGGAAAGGGTTAAGAAAAACAGAGGTAAGTACAACATCATAGACTTTTCATTCTTATA GTCAAATACTCAACTTCTAGCCAATGAGAGTTGGTTCAACTGCTAGGATCAAGTAGTGTCAACAAACAGTCTGGTTTTGA TTTGTTCTGGTGGGTTGCATTGGCAGATCATCTTTTATCTGTAAGTACCGTGCAAGCCTTCCACGGCTCTTAGAATGTTC TCACCATGAAATAGGGCTATCTTCCCTCCTCCTAAACCTTTTATTTTTGAAGTAAACTAAGCCCTTGTGTTCCTAATCTT TTTGCTTTGGATATGCATCTTAACTTGGTCAGCAGAAACGCTGCTGCTCTATTCAATGTTGGACTCTTTTTTCCTTCCTG TTTAGTTTACCCTCAAGGTTTTTTTTCTGAAATTTACCTGTCAGTACTCTAATTTTTAATTTAATCTAATCTAATTCCAG CCAAAGCATGTTTTGTAACAATGATGATGACTTTGCCATTAGTGAATGTTTTTTTTATTTGCATTTTGCATGTATTTTAT GCTGCACAGGGTATAGTGATCTATAATTTCCAGTTACCCATTTCAAATGCTGATTTTATTATGAAGATGAAAACAAATGG TGTAAATTGTCTGAACCCTCTTGAACTCATTGTCTCTCGGCTATTGTTGCAGCGGAATATTGATTCGGACTTTGGCTGAT GCTTCACATGAAAAGCGATCTCTGTCTGCGCCGCAAATCATTCTCAATGTTCTAGGATTCTGTGTAACTGTGGCCACGAC CATTGTTGTCACAGTGTATGCTAAGAGACGGCTCAAGGAGTTACAGAGTGAGGATGACGAGTCGTTGTTGAGATAGTCCA GTTTTTTTAGTCTGGGCTTTCATTGCTTACTGTAAGAAGCAGCCACTCCTATATGATGCTGGCAAGTGCTTCTCATTGCC CTGCTAGGAGAGGTTTGATCTAGTAACTTCTTCCATGGAAAGGGTTGACAGTCAAATGTATTATAACTGGGTTGACCAAG GATTTCGGAGGAACAAGCTAACATGACTAACACCCTCGGCGTCTCCGTGTCCTGCTTCTTTTATGGTTCACAAAAAATGT TTTCTTTGTTAGTGCTTCTATCTCATTTATCATTGTATATGAATTCATAGGATTGGATTGTGTATATCAAGTACATCAAT GTTTGTTGACTTGCCAGCATGCCACTGGAATTATGCTCTGTCTGCTTTGTTTAAGTTTCTGTTAATTTAGTAAAGCAAGA GCACCTAATTCAAAGAAGAATGGTAATGACCAGCAAGTAACACATCTCTTAAATATCTGGGTTCAAAACTTGGGAGCATC AATAAATGCTCTTTCCATGCAATGATGCAACATTAAAAATTATAAAATTGA
CDS sequence (LotjaGi4g1v0211900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGTATTATGAGGATGAAGGCGGTGGTCGGAGAGTGGAGGTGGTGTGTCAAATTGAGGATAATAATATTAATGGGGA CTATGTCAAATTGGGGCCCGGTGCTGTAGACGATTCTCCGCCAGCTCCTCCTGCGCCGGGGAGAAGATCGGCTCTGTGGT TTTGGGTGAAACTGGTGGTGCTGATTTTGTTCGTGGGTTCGTTGGCTGTTGTTGTGATCAAGTGGGTTGGACCCTATTTC ATTGACAAGGAGGTTATTCCAATAATAAATTGGGAAACTGAGACTTTCAGTACCCCAGTGCTTATCCTTTTGGTATTTGT TTCGGTAGCGCTGTTCCCGACCTTACTTTTGCCATCTACACCCTCTATGTGGGTGGCTGGAATGACATTTGGTTATGGCT TTGGGTTCTTGCTGATAATTACTGCAGCAGCTATTGGTGTGTCACTCCCTTTTTTCATTGGCTCAACCTTCCATCATAAA ATTGAAGGATGGTTAGAGAAGTATCCAAAGAGAGCTTCTGTTATAAGATCTGCTGGTGGAGGAAACTGGGTTCATCAGTT TCGAGCAGTTACCTTGATTAGGATTTCTCCATTCCCTTACATAATCTACAACTATTGTGCTGTGGCAACAAATGTTAAGT ATGGGCCTTACATTATTGGATCCTTGGTTGGAATGGTGCCGGAAATATTTGTTGCAATCTATACCGGAATATTGATTCGG ACTTTGGCTGATGCTTCACATGAAAAGCGATCTCTGTCTGCGCCGCAAATCATTCTCAATGTTCTAGGATTCTGTGTAAC TGTGGCCACGACCATTGTTGTCACAGTGTATGCTAAGAGACGGCTCAAGGAGTTACAGAGTGAGGATGACGAGTCGTTGT TGAGATAG
Protein sequence (LotjaGi4g1v0211900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTYYEDEGGGRRVEVVCQIEDNNINGDYVKLGPGAVDDSPPAPPAPGRRSALWFWVKLVVLILFVGSLAVVVIKWVGPYF IDKEVIPIINWETETFSTPVLILLVFVSVALFPTLLLPSTPSMWVAGMTFGYGFGFLLIITAAAIGVSLPFFIGSTFHHK IEGWLEKYPKRASVIRSAGGGNWVHQFRAVTLIRISPFPYIIYNYCAVATNVKYGPYIIGSLVGMVPEIFVAIYTGILIR TLADASHEKRSLSAPQIILNVLGFCVTVATTIVVTVYAKRRLKELQSEDDESLLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 291 | 291 | 6.0E-142 | – | |
| PANTHER | 1 | 291 | 291 | 6.0E-142 | – | |
| Phobius | 1 | 51 | 51 | - | – | |
| Phobius | 52 | 76 | 25 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 77 | 95 | 19 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 96 | 117 | 22 | - | – | |
| Pfam | 117 | 237 | 121 | 1.5E-16 | ||
| Phobius | 118 | 128 | 11 | - | – | |
| Phobius | 129 | 153 | 25 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 154 | 216 | 63 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| TMHMM | 217 | 239 | 23 | - | – | |
| Phobius | 217 | 237 | 21 | - | – | |
| Phobius | 238 | 256 | 19 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 257 | 278 | 22 | - | – | |
| Phobius | 279 | 295 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0211900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…