Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0212700 |
| Transcript ID | LotjaGi4g1v0212700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q2TLY1|MACO2_DANRE Macoilin-2; TrEMBL-Plants: tr|A0A0B2QNM3|A0A0B2QNM3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0212700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49464268..49468654) extracted from Lotus japonicus Gifu genome v1.2.
GATTTTTAAAATAAAAGATTTGCCTTAATTTGTAGTTATCCTCATTATTTTTACGCTAAAATTAGTCTTCTTCCTAAGCT CTAATTGCTTCTTTGTAGAAGCTGCCTTGCTCTCTCCTTGATCCGCTATTATATTTCTACTCTTTTTTTTGTTCACTGGT GTTTTCTTTTACTTGCAGGAATAATTTCCTATAAATGGATTGGACCGGTTCTTATAAGTATTTCTTATAGCTCTACCTAC AGGATTTTTGATAACCCTTTTTTGAGTCGGTTGCAAAGGCTTTTTGTCCAGTAGAAGTTGTTTGTACTCAGGCAGAAAGT ATATGTCTTTACATGGTTATCATTGAGGACATTGTCGCGAAATATCATCAGATATTTAAAGGCTCTGACTACTATGTTTG TACCCAAGGTATGTTATGTCAAATTGATTTTTTGTGCTTTTTGTGAAGAGATGGCACGAAATTATGATCGTCCAAGTTTA TTTTGGTTTTTTTGTTCATTTTAGTGGGATGATTAGTTTTATGCTTGGATATAATTCTGATTTTACAGGGTAACAACAAG AACAGTAAGGTGATGCAAATTCACCTTCTCTGAATTGGTCCATTTTCTTCCTGTTGCCATGGCGAATGAAGTAATGTTTG ATTAACGTAGTTTCCTGTGATAACATAATCTTTTGAATTCTGGATTTCCTTGAAGATAGATTAGCGCATTCCATAAATTG TGTCTTTTAAGTTTAAAGCAAGAGATTTTGTTAACCCCACAGATCTTTGCTGCAGGTTCCCTCTTCCACAATGTCCTGCA ACTGGCCTTATCTGTACTTTCCATGAACTATTCTCGCAACAATATTCTATTCTGAGAGCTTCAATTATAGTTTGTGAGTA TGTAGACAAGGCAAATCTTTAAACTTATGATTTAAAGCAAATGTTTTGATTCTTTATTTGTATCTAAAGATATTGCAGGT GGTTATTGTAGGAGACATTAGCCAGGTGATTTGATATGATACGAAAGATGGTGAGAATGGAAGTATTAATGATCCAGCCA TATAGTTCTGCTCCACCTATGATACATAGTAGCCAAAATTAAGGATTTCTCATCACTCCAAATTCCATTCAATACTGTGT GAGGTGACTCATATCTTTCTCATAATTAATTGTCTCATAAAAAGTTAATCTAATGGCCATACAAAGTACCAGCAAGTCAC TAATTTTTTCCCTTTTCTTCAGCAGTTTTAAACCCTTTTTCTATATGCAGAGCGAAAAATGTCTATAGGTTTACAGAGCA ATGAAAGTCTAATTAATGTGATTCACTGTTATCTTCTGACTAATTCATCACAAGGAGGATAAGTTATCAAAGTTTTGCAA TCATTGTTAACAAAAATGATACATAATTATTGGTGGTGGATGAAAGATGGTCCTGTCGTGGATCGTGGCTATTGGCTAAC AAGATCAAATTTGCGGAGCATATAATTATATTTAGAGCAGCTATGAATGTGGTACAGGAACTTAATAAAATGATACTGTT GAGAAATTTAGTAGAGTGATGTGTTTTAACTTGAACTCTTTAATCAGACAGAAAGATGACATGTCATTCTTCAGTGCCAA AAGCTAAACACTCTCTGTTCATGTTCTGAACCTTTTGGTCCTAATCTAGCTCTGGTGTTTTGATGGATTAAATAATGATT ACTTTAATGATTGCCTTAGGAGGAGGTCAAGAAGAAGTTTTACTATGCTGCCACTCATACATTTTCAAAGTTTCATTGCC CTCATACTATTGGATATTGTCTTGACTATACCTAATCTACATCTGCTGTTATTGGTCTTACAATTTAATATTTTTTTGTT TCTATTTGGATTGTGTACTGGCTTAAATGTTTCTCTTTCAATTTTCAACTTTTCATCTTTATAGTTAAGAGTTCCTAATG GAGAACCTATTACTGCTTTGAACTGATTTCAGGTCTCAAAGTCAACTTTCACAAAAGCAAATTGGCAGGGGTGGCAGTGG ATCGGGATTGTTTAGGGCAGTTTGCCGCCGTTCTTCATTGCAAGGTAATGTCCATTCCGTTTGTGTATTTGGGGATCCCG GTGGGAGGAAGATTAAAGAGCTTGGCATTGTGGGATGCAGTTATTAAGAAGATGAAGGGGAGGCTCTCTTCGTGGAAACA GAAACATATATCCTTTGGAGGACGATTGTGTCTGATTCAGAGTATCTTGTCTGCTTTACCGCTATTTTTTCTCTCTTTTT TCAAAATCCCAGTAGGTGTCCTCACGATTTGTACTGGAATTATGAGGAGATTTTTGTGGGGAGGGGTCGAATCGGATAGT AAAATTAATTGGGTTAAATGGTCGGAGGTTTGCAAACCAAAGGACCATGGTGGGTTGGGTGTAAAGGATTGGAGGTTATT TAATACTGCACTGTTAGGGAAGTGGAACTGGCGGTTTTTGACTGAGCCAGATAGTCTTTGGTGTCGTGCGGTCATGGCAA ATTGTAGAACCTGCGGAGAATCATCATGGTGGAAGGATGTCCAGTCCATTCGTGTGGAAGAAGGGTGGTCATGGTTTGAA CATAACCTGCAGAAAACTGTCTGTGAAGGAAACCAGACCATGTTTTGGGCAGAAAACTGGATAGGAACTGGTAGTTTAGA ACTTCGGTTTAGACGCTTATATAATCTTTCTTGTCAGAAACGGGAACCAGTGAAGAATATGGGTTATTGGGAGAATGGGG TGTGGCGGTGGTCATTTCGATGGAGGAGGAGGTTGCAAGGAAGGGAGGTGGGATGGTTTGAGGAGTTAACGGGGGTTTTG CGAGCTGCACAATTGGTAGAGAATAAGCAGGATAGCTGGGTGTGGGAACTAGAAGGGGGTGGCTCTTACTCAGTTAATTC TTCTTATGTTTTTTTGCAGGGACAAAACTTAGGTGAAACGAATCCTGTGTTCTCATGGATATGGACAGCACCAGCACCTT CCAACATAAAGGCATTTGCATGGAGAGTAATGTTAGGCCGCATTCAGACTCGGGATAATTTGCTGAAGAGACAAGTCATT CATACTGCCGCTGAAGCTCTTTGTCCGTTATGTGGCCGGGTGGAGGAATCTTGTTCCCATTTGCTCTTTACGTGCCCCGC TGCCTTGCTGATATGGTATGATGTTTATGCCTGGTTGGGTGTGTCCACAGCTCAGATTCCAGTTGGTGAGGTACACTTAC TGCAATTTGCCTCAATTGGGAGTAATAAATCTCAAAAATTAGGTGAAGTTGCAATATGGCTGACTGTAGTTTGGTCATTA TGGTGTGTGCGTAATAGAATTGTTTTCAGTGGGGGTGAGCTACTTAAAGACCAAATTCTGGAGCAGGTTCAGCTTAAATC GTGGCAGTGGTTAACAGCTCGGCGGGTTGAATTTTCCTACTCTTGGTTTGAGTGGAAATCGAACCCACGATTGTGCCTTC TGTCATTGTGAGGTCTGAACTGTCATGGTAATGAGATTGCTGTTTGTGAGGGGAGTATATGCGTTTCTGATGTCACAGCA ACATGAGCATTTGATATACTAATGATGCGTGGAATACATTTACACTTGTTGTTCAACTTTTATTGATAATGTGGCAGTGG TATATGGCTCAATGGACTCTTTGCGTGGGAGTATATTTTACATGTGTTGCTAAGTTCATATTGAGGATGGGACAATGGTT TATGGCTGATTGGATTCCAAGGATAGTATTAGGTGCACTGACGCTATGGGACCTGAGGATGTGGCTCTGTTCTGGATCAC CATTATTGTATATGGATTTTATTGTAATTGACATCTTGGGGTTTCGCTTTGGCTCTTACAAATGTGTACTCTTTTTCCTT CACCAGGTTTTTCCCAAGGGGGTTTTCCTGGTAAGGTTTTAATGAGGCACATTTCTAAGAGCTTTCCCCAAGGTTGTTGG GTTTTTTATTGTTGTATCTTTGTATCTCTTTCTCTTTGTATTGGGTTGAAGTACCCCTTGTACTTCATTTCAATATAATT TTTGGCTTATCAAAAAAAAAAAAAAAAACTGGTGTGGAGAGGTAAGCTTTTAAGTATTTTTCTTATTTTTGGAGGTTATC TTAATTAGTAGTTGTTTGGAACACAGATTGTTTGGAACTATTACTTGAATTCTTTTGAGAATTTTAATTCTGTTATCCCT TTTGCCCAATAGTTTTAGGATTTTATCTGGTGTGCTCTAAAACTTAAAAGGGAGGGTTCAATAATTTTTCTTATGTTTCC ATAGGGGTTTTGAGATTTTGCACTAAGCATATTTTTTCCAGTTGCCTTCCTTTTGATAATGCTTATTTCTTCCGGATCCT TTGACACCTTTTGATCTGTTTTGCTTGAGCCGATGCAGGTATTTGTGCTGATGTTGTAGTCGAATGC
CDS sequence (LotjaGi4g1v0212700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGGCCGCATTCAGACTCGGGATAATTTGCTGAAGAGACAAGTCATTCATACTGCCGCTGAAGCTCTTTGTCCGTT ATGTGGCCGGGTGGAGGAATCTTGTTCCCATTTGCTCTTTACGTGCCCCGCTGCCTTGCTGATATGGTATGATGTTTATG CCTGGTTGGGTGTGTCCACAGCTCAGATTCCAGTTGGTGAGGTACACTTACTGCAATTTGCCTCAATTGGGAGTAATAAA TCTCAAAAATTAGGTGAAGTTGCAATATGGCTGACTGTAGTTTGGTCATTATGGTGTGTGCGTAATAGAATTGTTTTCAG TGGGGGTGAGCTACTTAAAGACCAAATTCTGGAGCAGGTTCAGCTTAAATCGTGGCAGTGGTTAACAGCTCGGCGGGTTG AATTTTCCTACTCTTGGTTTGAGTGGAAATCGAACCCACGATTGTGCCTTCTGTCATTGTGA
Protein sequence (LotjaGi4g1v0212700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGRIQTRDNLLKRQVIHTAAEALCPLCGRVEESCSHLLFTCPAALLIWYDVYAWLGVSTAQIPVGEVHLLQFASIGSNK SQKLGEVAIWLTVVWSLWCVRNRIVFSGGELLKDQILEQVQLKSWQWLTARRVEFSYSWFEWKSNPRLCLLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 151 | 151 | 1.5E-22 | – | |
| PANTHER | 1 | 151 | 151 | 1.5E-22 | – | |
| Pfam | 3 | 49 | 47 | 7.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0212700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…