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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0212700 |
| Transcript ID | LotjaGi4g1v0212700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q2TLY1|MACO2_DANRE Macoilin-2; TrEMBL-Plants: tr|A0A0B2QNM3|A0A0B2QNM3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0212700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49464498..49468595) extracted from Lotus japonicus Gifu genome v1.2.
AATTAGTCTTCTTCCTAAGCTCTAATTGCTTCTTTGTAGAAGCTGCCTTGCTCTCTCCTTGATCCGCTATTATATTTCTA CTCTTTTTTTTGTTCACTGGTGTTTTCTTTTACTTGCAGGAATAATTTCCTATAAATGGATTGGACCGGTTCTTATAAGT ATTTCTTATAGCTCTACCTACAGGATTTTTGATAACCCTTTTTTGAGTCGGTTGCAAAGGCTTTTTGTCCAGTAGAAGTT GTTTGTACTCAGGCAGAAAGTATATGTCTTTACATGGTTATCATTGAGGACATTGTCGCGAAATATCATCAGATATTTAA AGGCTCTGACTACTATGTTTGTACCCAAGGTATGTTATGTCAAATTGATTTTTTGTGCTTTTTGTGAAGAGATGGCACGA AATTATGATCGTCCAAGTTTATTTTGGTTTTTTTGTTCATTTTAGTGGGATGATTAGTTTTATGCTTGGATATAATTCTG ATTTTACAGGGTAACAACAAGAACAGTAAGGTGATGCAAATTCACCTTCTCTGAATTGGTCCATTTTCTTCCTGTTGCCA TGGCGAATGAAGTAATGTTTGATTAACGTAGTTTCCTGTGATAACATAATCTTTTGAATTCTGGATTTCCTTGAAGATAG ATTAGCGCATTCCATAAATTGTGTCTTTTAAGTTTAAAGCAAGAGATTTTGTTAACCCCACAGATCTTTGCTGCAGGTTC CCTCTTCCACAATGTCCTGCAACTGGCCTTATCTGTACTTTCCATGAACTATTCTCGCAACAATATTCTATTCTGAGAGC TTCAATTATAGTTTGTGAGTATGTAGACAAGGCAAATCTTTAAACTTATGATTTAAAGCAAATGTTTTGATTCTTTATTT GTATCTAAAGATATTGCAGGTGGTTATTGTAGGAGACATTAGCCAGGTGATTTGATATGATACGAAAGATGGTGAGAATG GAAGTATTAATGATCCAGCCATATAGTTCTGCTCCACCTATGATACATAGTAGCCAAAATTAAGGATTTCTCATCACTCC AAATTCCATTCAATACTGTGTGAGGTGACTCATATCTTTCTCATAATTAATTGTCTCATAAAAAGTTAATCTAATGGCCA TACAAAGTACCAGCAAGTCACTAATTTTTTCCCTTTTCTTCAGCAGTTTTAAACCCTTTTTCTATATGCAGAGCGAAAAA TGTCTATAGGTTTACAGAGCAATGAAAGTCTAATTAATGTGATTCACTGTTATCTTCTGACTAATTCATCACAAGGAGGA TAAGTTATCAAAGTTTTGCAATCATTGTTAACAAAAATGATACATAATTATTGGTGGTGGATGAAAGATGGTCCTGTCGT GGATCGTGGCTATTGGCTAACAAGATCAAATTTGCGGAGCATATAATTATATTTAGAGCAGCTATGAATGTGGTACAGGA ACTTAATAAAATGATACTGTTGAGAAATTTAGTAGAGTGATGTGTTTTAACTTGAACTCTTTAATCAGACAGAAAGATGA CATGTCATTCTTCAGTGCCAAAAGCTAAACACTCTCTGTTCATGTTCTGAACCTTTTGGTCCTAATCTAGCTCTGGTGTT TTGATGGATTAAATAATGATTACTTTAATGATTGCCTTAGGAGGAGGTCAAGAAGAAGTTTTACTATGCTGCCACTCATA CATTTTCAAAGTTTCATTGCCCTCATACTATTGGATATTGTCTTGACTATACCTAATCTACATCTGCTGTTATTGGTCTT ACAATTTAATATTTTTTTGTTTCTATTTGGATTGTGTACTGGCTTAAATGTTTCTCTTTCAATTTTCAACTTTTCATCTT TATAGTTAAGAGTTCCTAATGGAGAACCTATTACTGCTTTGAACTGATTTCAGGTCTCAAAGTCAACTTTCACAAAAGCA AATTGGCAGGGGTGGCAGTGGATCGGGATTGTTTAGGGCAGTTTGCCGCCGTTCTTCATTGCAAGGTAATGTCCATTCCG TTTGTGTATTTGGGGATCCCGGTGGGAGGAAGATTAAAGAGCTTGGCATTGTGGGATGCAGTTATTAAGAAGATGAAGGG GAGGCTCTCTTCGTGGAAACAGAAACATATATCCTTTGGAGGACGATTGTGTCTGATTCAGAGTATCTTGTCTGCTTTAC CGCTATTTTTTCTCTCTTTTTTCAAAATCCCAGTAGGTGTCCTCACGATTTGTACTGGAATTATGAGGAGATTTTTGTGG GGAGGGGTCGAATCGGATAGTAAAATTAATTGGGTTAAATGGTCGGAGGTTTGCAAACCAAAGGACCATGGTGGGTTGGG TGTAAAGGATTGGAGGTTATTTAATACTGCACTGTTAGGGAAGTGGAACTGGCGGTTTTTGACTGAGCCAGATAGTCTTT GGTGTCGTGCGGTCATGGCAAATTGTAGAACCTGCGGAGAATCATCATGGTGGAAGGATGTCCAGTCCATTCGTGTGGAA GAAGGGTGGTCATGGTTTGAACATAACCTGCAGAAAACTGTCTGTGAAGGAAACCAGACCATGTTTTGGGCAGAAAACTG GATAGGAACTGGTAGTTTAGAACTTCGGTTTAGACGCTTATATAATCTTTCTTGTCAGAAACGGGAACCAGTGAAGAATA TGGGTTATTGGGAGAATGGGGTGTGGCGGTGGTCATTTCGATGGAGGAGGAGGTTGCAAGGAAGGGAGGTGGGATGGTTT GAGGAGTTAACGGGGGTTTTGCGAGCTGCACAATTGGTAGAGAATAAGCAGGATAGCTGGGTGTGGGAACTAGAAGGGGG TGGCTCTTACTCAGTTAATTCTTCTTATGTTTTTTTGCAGGGACAAAACTTAGGTGAAACGAATCCTGTGTTCTCATGGA TATGGACAGCACCAGCACCTTCCAACATAAAGGCATTTGCATGGAGAGTAATGTTAGGCCGCATTCAGACTCGGGATAAT TTGCTGAAGAGACAAGTCATTCATACTGCCGCTGAAGCTCTTTGTCCGTTATGTGGCCGGGTGGAGGAATCTTGTTCCCA TTTGCTCTTTACGTGCCCCGCTGCCTTGCTGATATGGTATGATGTTTATGCCTGGTTGGGTGTGTCCACAGCTCAGATTC CAGTTGGTGAGGTACACTTACTGCAATTTGCCTCAATTGGGAGTAATAAATCTCAAAAATTAGGTGAAGTTGCAATATGG CTGACTGTAGTTTGGTCATTATGGTGTGTGCGTAATAGAATTGTTTTCAGTGGGGGTGAGCTACTTAAAGACCAAATTCT GGAGCAGGTTCAGCTTAAATCGTGGCAGTGGTTAACAGCTCGGCGGGTTGAATTTTCCTACTCTTGGTTTGAGTGGAAAT CGAACCCACGATTGTGCCTTCTGTCATTGTGAGGTCTGAACTGTCATGGTAATGAGATTGCTGTTTGTGAGGGGAGTATA TGCGTTTCTGATGTCACAGCAACATGAGCATTTGATATACTAATGATGCGTGGAATACATTTACACTTGTTGTTCAACTT TTATTGATAATGTGGCAGTGGTATATGGCTCAATGGACTCTTTGCGTGGGAGTATATTTTACATGTGTTGCTAAGTTCAT ATTGAGGATGGGACAATGGTTTATGGCTGATTGGATTCCAAGGATAGTATTAGGTGCACTGACGCTATGGGACCTGAGGA TGTGGCTCTGTTCTGGATCACCATTATTGTATATGGATTTTATTGTAATTGACATCTTGGGGTTTCGCTTTGGCTCTTAC AAATGTGTACTCTTTTTCCTTCACCAGGTTTTTCCCAAGGGGGTTTTCCTGGTAAGGTTTTAATGAGGCACATTTCTAAG AGCTTTCCCCAAGGTTGTTGGGTTTTTTATTGTTGTATCTTTGTATCTCTTTCTCTTTGTATTGGGTTGAAGTACCCCTT GTACTTCATTTCAATATAATTTTTGGCTTATCAAAAAAAAAAAAAAAAACTGGTGTGGAGAGGTAAGCTTTTAAGTATTT TTCTTATTTTTGGAGGTTATCTTAATTAGTAGTTGTTTGGAACACAGATTGTTTGGAACTATTACTTGAATTCTTTTGAG AATTTTAATTCTGTTATC
CDS sequence (LotjaGi4g1v0212700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGGCCGCATTCAGACTCGGGATAATTTGCTGAAGAGACAAGTCATTCATACTGCCGCTGAAGCTCTTTGTCCGTT ATGTGGCCGGGTGGAGGAATCTTGTTCCCATTTGCTCTTTACGTGCCCCGCTGCCTTGCTGATATGGTATGATGTTTATG CCTGGTTGGGTGTGTCCACAGCTCAGATTCCAGTTGGTGAGGTACACTTACTGCAATTTGCCTCAATTGGGAGTAATAAA TCTCAAAAATTAGGTGAAGTTGCAATATGGCTGACTGTAGTTTGGTCATTATGGTGTGTGCGTAATAGAATTGTTTTCAG TGGGGGTGAGCTACTTAAAGACCAAATTCTGGAGCAGGTTCAGCTTAAATCGTGGCAGTGGTTAACAGCTCGGCGGGTTG AATTTTCCTACTCTTGGTTTGAGTGGAAATCGAACCCACGATTGTGCCTTCTGTCATTGTGA
Protein sequence (LotjaGi4g1v0212700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGRIQTRDNLLKRQVIHTAAEALCPLCGRVEESCSHLLFTCPAALLIWYDVYAWLGVSTAQIPVGEVHLLQFASIGSNK SQKLGEVAIWLTVVWSLWCVRNRIVFSGGELLKDQILEQVQLKSWQWLTARRVEFSYSWFEWKSNPRLCLLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 151 | 151 | 1.5E-22 | – | |
| PANTHER | 1 | 151 | 151 | 1.5E-22 | – | |
| Pfam | 3 | 49 | 47 | 7.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0212700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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