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LotjaGi4g1v0218900.1

Overview

Field Value
Gene ID LotjaGi4g1v0218900
Transcript ID LotjaGi4g1v0218900.1
Lotus japonicus genome version Gifu v1.2
Description Dehydration-responsive element binding factor; TAIR: AT1G12610.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LN86|DRE1F_ARATH Dehydration-responsive element-binding protein 1F; TrEMBL-Plants: tr|V7CF76|V7CF76_PHAVU DREB1F protein; Found in the gene: LotjaGi4g1v0218900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:51386677..51387935) extracted from Lotus japonicus Gifu genome v1.2.

CCCTCACTCACTCACTCACTAGCTAACTCAATTTTCAGCACTTCCAAACATTTTCCATAGCTAAAAGCAAACCAATTCAC ACACTGCAAATGAATTCACTTGAAGAATCTAGTTACGAGCACTACTCATGTTCATCATCAGAAACGACGAGTTCCTCCTC TAACCGTAATGAAGAAGCTATCATCACACTAGCATCAGCGAAGCCAAAGAGGCGTGCGGGGCGAAGAATATTCAAGGAGA CGAGGCACCCGGTGTACAGAGGAGTGAGGAGGAGGAACAACGACAAGTGGGTCTGCGAGGCGCGTGTTCCCAACGAGAAG AACGGCAGGATTTGGCTCGGAACGTATCCGACCCCTGAGATGGCGGCGCGTGCGCACGACGTTGCGGCGCTCGCGCTTCG TGTGAAGTCCGCTTGCCTCAACTTTGCGGACTCCGCGTGGCGGATTCCACCGTTGTTGCCGGCGTCGAACTGTAAGAAGG AGATAAGAAGGGTGGCGGGGGAGGTTGCTGAGGCGTTTGTGGTTGAGGATATTGATGGTGATGAGGTTTGTAGCAGCAAC AGCGTTAATGAGAATGAAAAACCGTTGCAGTTGAAGGGGTTGTGTTTGGATATTGAAGTTCTGGGTGGTGTGTCGTCGGG GTTGCAGGCGGAGCAGGAGCTGCATGATTGGCTTCGGAGAATGGTGGATGAGCCTCTACGATCTCCACAGCATGCATTTG TGGGATCATATGGTTGGGATTGGAGTGATGTGCAGGGTGATACTGAGGTTTCCTTGTGGAGTTTTGCTATTTGATGATGC ATGAAGCACCCAATTTAGGCTTTGACTAGTTAGTGTTTCAATGATTTTATTTATTTTTGCCTTTGGTTTTCTCGTGATAG ATCAACAATTATGGAAAATGCAAAGCAGTTCTAAAAAAATTAAGAAAATTTTGTTACAAAAGCAGTTCTTATTTGTCATC AATTGAAGATCAAATGGGGGGTTCTAACCCAGGAGAATGTCTGCGACAGGTTTGATGGAATGGTTCACTTGCCAACGAAG TTAGTGGTAGTGATAAATTGTGAACTGGTTCTGTAATATGCACAATATGTACAGTTGCTTGCTGCATTGACAGTTGCTTA CTGCATTGACAATCAATTGTTTTTATTTATTGGACAGAGACATCAACTGGGGAAGGTTCTGTTCTTTCTGAGTTTGGTAT CAAATGTACGCGGGACCTGCTGAATTACTTGTTGGGTGCATGTTAATTATGTTAGAATA 

CDS sequence (LotjaGi4g1v0218900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTCACTTGAAGAATCTAGTTACGAGCACTACTCATGTTCATCATCAGAAACGACGAGTTCCTCCTCTAACCGTAA TGAAGAAGCTATCATCACACTAGCATCAGCGAAGCCAAAGAGGCGTGCGGGGCGAAGAATATTCAAGGAGACGAGGCACC CGGTGTACAGAGGAGTGAGGAGGAGGAACAACGACAAGTGGGTCTGCGAGGCGCGTGTTCCCAACGAGAAGAACGGCAGG ATTTGGCTCGGAACGTATCCGACCCCTGAGATGGCGGCGCGTGCGCACGACGTTGCGGCGCTCGCGCTTCGTGTGAAGTC CGCTTGCCTCAACTTTGCGGACTCCGCGTGGCGGATTCCACCGTTGTTGCCGGCGTCGAACTGTAAGAAGGAGATAAGAA GGGTGGCGGGGGAGGTTGCTGAGGCGTTTGTGGTTGAGGATATTGATGGTGATGAGGTTTGTAGCAGCAACAGCGTTAAT GAGAATGAAAAACCGTTGCAGTTGAAGGGGTTGTGTTTGGATATTGAAGTTCTGGGTGGTGTGTCGTCGGGGTTGCAGGC GGAGCAGGAGCTGCATGATTGGCTTCGGAGAATGGTGGATGAGCCTCTACGATCTCCACAGCATGCATTTGTGGGATCAT ATGGTTGGGATTGGAGTGATGTGCAGGGTGATACTGAGGTTTCCTTGTGGAGTTTTGCTATTTGA 

Protein sequence (LotjaGi4g1v0218900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSLEESSYEHYSCSSSETTSSSSNRNEEAIITLASAKPKRRAGRRIFKETRHPVYRGVRRRNNDKWVCEARVPNEKNGR IWLGTYPTPEMAARAHDVAALALRVKSACLNFADSAWRIPPLLPASNCKKEIRRVAGEVAEAFVVEDIDGDEVCSSNSVN ENEKPLQLKGLCLDIEVLGGVSSGLQAEQELHDWLRRMVDEPLRSPQHAFVGSYGWDWSDVQGDTEVSLWSFAI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 28 28 -
PANTHER 5 233 229 1.4E-79
PANTHER 5 233 229 1.4E-79
Pfam 54 104 51 1.0E-11
SUPERFAMILY 55 115 61 8.5E-19
ProSiteProfiles 55 113 59 20.837
SMART 55 119 65 1.9E-20
Gene3D 55 114 60 2.1E-23
PRINTS 56 67 12 8.7E-7
CDD 56 115 60 1.80285E-24
PRINTS 79 95 17 8.7E-7

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0218900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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