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LotjaGi4g1v0219200.1

Overview

Field Value
Gene ID LotjaGi4g1v0219200
Transcript ID LotjaGi4g1v0219200.1
Lotus japonicus genome version Gifu v1.2
Description Dehydration-responsive element binding factor; TAIR: AT1G12610.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LN86|DRE1F_ARATH Dehydration-responsive element-binding protein 1F; TrEMBL-Plants: tr|V7CF76|V7CF76_PHAVU DREB1F protein; Found in the gene: LotjaGi4g1v0219200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:51504880..51505932) extracted from Lotus japonicus Gifu genome v1.2.

CAATTTCAGCACACTTACCATTTCACATAAGCAGAGAGTAGCTACTACCTACAACTAACCAACGAAGCGAATGAACTCGA TTGACACAGAGCAGTACTCTGCAGGTTCATCATCTGAAGCTTGCTCGGATATGATGCTAGCATCAGCTAGGCCAAAGAAG TGTGCAGGGTGTCGAGTGTTCAAGGAGACAAGGCACCCTGTGTACCGAGGAGTGAGGAGCAGGAACAACAACAAGTGGGT GTGCGAGGTTCGTGTTCCCAATGACAAAACAACCAGGATATGGCTCGGCACCCACCAGACACCTGAGATAGCGGCCCGTG CGCACGACGTTGCGGCGCTCGCGCTTCGTGGGAAGTCCGCTTGCCTCAACTTCGCGGACTCCGCGTGGAGGGTGCCGCCG TTGTTGCCGGCGTCAAACAGTGCAAAGGAGCTTAGGAGAGTGGCAACGGAAGTTGCACATGCGTTTGCGGCTGAGGACCG TTGCCATGGCCAGCAACAGCAGCAGCAGCAAACTTATAATGGTGATCAGCTCTGTAGCACCGGTGACAGCGTTGAAGTTG TGGAAAACAGTAATAATAGTGATAAAACATTGCATGACTTGGAAAGGTTGTGTTTTGAATTCGATGAAGTACTTCTTCAG GGTGGTATTGAGGAAGAACAGGACCTGCATGGTTGGATTCGGAACATGGAGGATGAGCCTTTAAGATCTCCACAGCATCC ATTTGAGGGATCATATGGTAATTACAGTGTGGAGAACTTGAGTATTGATGATGTGGATGTGGAGGTTTCCTTGTGGAGTT TTTCCATCTGAACAATCTGATATACGCACATTTAATTTGGTTTCTGATTAATTAGGCTTTTAATTTGATTGAGAGTGTCA TAAATCAGTGTTTGAATGATTGTCTGTCACTTGTTTTCTTGGATTTTGGTTTTAGTTAGCTTGTACGTACAATTACTCTC TTAATTTTTTCTGAATATATACATCGAATTTCTCATAAACCTTAAATTTGTTTCCCTTCCATATAGCTAAAAGAGTGAGA AAGTGAAGAAGTC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0219200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACTCGATTGACACAGAGCAGTACTCTGCAGGTTCATCATCTGAAGCTTGCTCGGATATGATGCTAGCATCAGCTAG GCCAAAGAAGTGTGCAGGGTGTCGAGTGTTCAAGGAGACAAGGCACCCTGTGTACCGAGGAGTGAGGAGCAGGAACAACA ACAAGTGGGTGTGCGAGGTTCGTGTTCCCAATGACAAAACAACCAGGATATGGCTCGGCACCCACCAGACACCTGAGATA GCGGCCCGTGCGCACGACGTTGCGGCGCTCGCGCTTCGTGGGAAGTCCGCTTGCCTCAACTTCGCGGACTCCGCGTGGAG GGTGCCGCCGTTGTTGCCGGCGTCAAACAGTGCAAAGGAGCTTAGGAGAGTGGCAACGGAAGTTGCACATGCGTTTGCGG CTGAGGACCGTTGCCATGGCCAGCAACAGCAGCAGCAGCAAACTTATAATGGTGATCAGCTCTGTAGCACCGGTGACAGC GTTGAAGTTGTGGAAAACAGTAATAATAGTGATAAAACATTGCATGACTTGGAAAGGTTGTGTTTTGAATTCGATGAAGT ACTTCTTCAGGGTGGTATTGAGGAAGAACAGGACCTGCATGGTTGGATTCGGAACATGGAGGATGAGCCTTTAAGATCTC CACAGCATCCATTTGAGGGATCATATGGTAATTACAGTGTGGAGAACTTGAGTATTGATGATGTGGATGTGGAGGTTTCC TTGTGGAGTTTTTCCATCTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0219200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSIDTEQYSAGSSSEACSDMMLASARPKKCAGCRVFKETRHPVYRGVRSRNNNKWVCEVRVPNDKTTRIWLGTHQTPEI AARAHDVAALALRGKSACLNFADSAWRVPPLLPASNSAKELRRVATEVAHAFAAEDRCHGQQQQQQQTYNGDQLCSTGDS VEVVENSNNSDKTLHDLERLCFEFDEVLLQGGIEEEQDLHGWIRNMEDEPLRSPQHPFEGSYGNYSVENLSIDDVDVEVS LWSFSI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31839
18 245 228 8.2E-80 –
PANTHER
PTHR31839:SF26
18 245 228 8.2E-80 –
Pfam
PF00847
43 94 52 8.3E-10
IPR001471
SUPERFAMILY
SSF54171
44 104 61 7.85E-19
IPR016177
SMART
SM00380
44 108 65 4.7E-21
IPR001471
ProSiteProfiles
PS51032
44 102 59 20.126
IPR001471
Gene3D
G3DSA:3.30.730.10
44 103 60 3.9E-23
IPR036955
CDD
cd00018
45 104 60 5.98449E-26
IPR001471
PRINTS
PR00367
45 56 12 2.6E-6
IPR001471
PRINTS
PR00367
68 84 17 2.6E-6
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0219200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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