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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0221800 |
| Transcript ID | LotjaGi4g1v0221800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYND type zinc finger protein; TAIR: AT5G50450.1 HCP-like superfamily protein with MYND-type zinc finger; Swiss-Prot: sp|Q9FK27|FB342_ARATH F-box protein At5g50450; TrEMBL-Plants: tr|A0A0R4J368|A0A0R4J368_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0221800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52594640..52601203) extracted from Lotus japonicus Gifu genome v1.2.
CATGATGTTACGATACGTGTTCCATTTCTAGCCCCATTAATTTTGGGGTCTCTTACTCTCCACTCCCTATCCTCCTCTTC CTCTTCAACTCTTCAAGTATAAATTGTCTCTTCTCATCGTTTCTGATTTCAGTTATACAGAGCATCACAGTCCCAAATCC CAATATCTGCATAGATTAACAAGTGCACGCATCCTCATCAACATAAATCTATCTTTTTGGGTTGAAGCCTTGTAACATGA AAAGGCCACTACGAAATTCCCATAAGGAAAGCTCCCAAAGCTACGACAATTTCTTAGATGTTTTACCTGATGACCTCGTC GTTTTCATCCTCTCCAAGCTCGCCTCCACCCTCTCTTCTCCTTCAGATTTCACCAACACCTTATTAACGTAAGTTCCACC CCATACAACAACATCTTCATTCAGCTTTTTCATCATCACAGTAATAATTTAATTTTCCATTAAAAATTATCCACAGATGC AAAAGATTCAACAGCTTATGTTTTCATCAACTAGTATTATCAAAACTCAGTGTCAAAGCATTCGCCATGAAGCCCAAAAA TTGGTCAGAACCGGCTCACAATTTTCTCAACCGTTGTGCCAACGCCGGCAACCTCGACGCCGGTTACACTCTCGGAATGG TTAGTAACAATTAGCATTGTTGTTGTGTTGTAACAGAAGCATGTGAATTTTTATTAACTTTGAAAGTTTTGTTCTGTTTT TCAGATCCGTTTTTACTGCTTGGAAAACCGTAAGAGCGGGCTTTCACTGATGGCGAAGGCGGCGATGAAGTGCCACGCGC CGGCGCTGTACTCCCTGGCGGTGATACAGTTCAACGGCAGCGGCAGCACCTCCAGGGATCTGAGAGCCGGCGTGGCCTTG TGTGCACGAGCCTCCCTCCTCGGCCACATCGACGCGCTTCGCGAGCTAGGCCACTGCCTCCACGACGGTTACGGCGTGCG CCGCGACGTCGACGAGGGGCGCAAGCTGCTCCTCCAAGCCAACGTTCGCGAGCTCGCGTTTGTGATGCACGCGGTTACTC AATCTCCCTCTTCCTCAACCTCGCTGCTGACGTGGCGCGATTGGCGGTTACGGGACTGCAAGTACCTCGCGGAAGCGGTT GGCTCGTTGGGCGGTTACGACGGTGGCGCGGTGCAGCCGGTGGATTGGTTCATGAGGGAGTGGTTTGAGTCAGGTTGCGG TGGTTTGGGGGAGGGGCTGAGGCTGTGCTCGCACATTGGGTGTGGGCGAGTTGAGACGCGGGCGCATGAGTTCCGGCGGT GTTCTGTTTGCGGCAAGGTGAACTACTGCTCGCGGGGGTGCCAGGCGGTGGATTGGAAGCTCCGACACCAGATGGAGTGC TCGCCGGTGGAAGTTTGGGATGAGGACAACGGTAACGACGGCGGTGATCTCGAGATGGGGAATTAAGAACGTGACGTTTG GTGATTGATTGGGAGGTAATTGCAGCGTGATTTCGTGTACAGATGTCAGATTAGAGCAACTCCAACCCCAAAATTTTTAT TTGGTTTCTTAACACACTATTCAGCACTATTTTTGTGGGCCCGTACTGCCACATCAGACTTAAGAAACTCCTAAGAAACT GAAGCAGATTTTGCTTCAACCCATGGGTTCTTAAATTACTATTTCAAGGGTCCCACTGTGTCCCACCATACAACATTAAT TTATAATATTTATTTTCATTCAATTTAGATTTAAAATTTAATATTAAATTAATAATATAATTAAATTTAATTATTTTCTT TTAATTTCCTTAATACTATAATTAAATATTAATGTTTGGGCTGAAAGTTCAAATAAAATTGGGCTTATCAAAGTAATCCA AAGTTGATTTCAAAAAAAAAAGTCCAAAGAGAAAAAACCGGCCAGGCCGGTCAAACCAAGTCCAAACCAAGTCATAACCG GTCTAGACCGGTCATTAACGGTTGGATGACCTGTTCAGCCGGTCACCACCTATATATTCAACTTTTTCTCTCTCTCCCCC ATTCATCAAACCCTAGCCGCATCCCTCCTCCCTCTTCTCTCTTCTTCTTCCTCTCTTCTCCCTCACCTGCATCCAGAAGC TTCTTCCTCTGCCTCTCTCCCTCACTTCTTCTCCCTCTCTCTGGTGTTTCACGCCTCTAAAGCCCAAACCGGCACCAAAC AACCACCACCGCCACCAAACAACCACTACCGCCACCATACAGCCACGGTACGCCCCCAACAACCCCTGTTTCATATGCTC AAAGCCTTGAAGCTTGCAAAGGAGCTTCCTTTTCACACATGCAAAGAGCCTCCATCGACAACCCTTCCTCCACCGCCATC AAGCATCAACCAAATCTGGAAATAAAGATAGACATCAATTCCTCTGACCGCATCGCAACTCCTTTTACTGGAATTTATTT TTTACTGGGTTGGGTTCAGAGAGAGGTTGAAGAAGAATCTTGAAGAAGAAGAAAAACCCAGATCAGAAGCTAAACAGAGT TAATTTCACAATAGAAGAAGCAATTAGCAAAGCCAATTAATAGTATGCCATGGTTTTAGTTTCCTAATCCCAAACAGAGA GTTACCTTTAAACGGAACGATTCACGGGACATGGGCATATACCAAGTTCTCAACGAAGCCAGTGCTCTGAGCAACACTTT TCAGAACCAGATAGACATCAATTCCTCTGACCGCATCGCAACTCCTTGTTGCCAAAGATCCAATTGAAGGGTTCAGTTCC AAACACAAAAAAGACAAGAAATTTGGAAAAAATTTCACAGACCCAGATCCGTTCACCATTGCAGATATAATTGACAGATT AATCCCAAAAGATGGTCACGTGAAGATGGAAAATGGGAGTACCTGAAGTGAAATCAGAGAGTGAGGTCTGAAATATGTTC TTCTTCTAAATTCTTCTTGCTTCTGACAAAAAGGAACAAAAAGATGAGAACTAGAAGACCCTCTGCAAATCAGTGAAGCA AAGGTTGACAAGATTGTCGAAGCTGTTGGAAACTTCGACTCTGTTGTAGTTGTCGACGATGCTCAGGAGCACCAGCGGGT GAACCACCACCTTCTCGATCGGTCGAGATGATACTTGCTGCGTTTTTATCACATCCTGGAAGCTCTTCTTCTCTCCCTGT AGATCTGGGTTCCGATCTCACCTGAAACCCTTGCTCCTAGATCGGCGTTTTGTTGAGTTCATCTTCCGCTTCCATCGCCG TGTACTCGTAGATCTGCATCATCCCCTAGATATTCTCCCTGATCTGCGTCCTGAGGTCCAGTGTGGAAAAGAGGTTGAGG TCGCCGGTGTGGAAAGGAGGTTGGGATGGAGGAGGATACGATAGCAGTGGTGATCGTTGTGAAGGTGGATACGGTGGTGG TAGTGGTGGTCATCGAGAGGGTGGATACGGCGGTGGTTACTGTAGCCAAGGATATCTTTCTAGTCTTTAGATTATGTTTA CTTTTTTACCCTTTTGAGTATAAATGAATCCTAGCCACTCATTCCAAAGAATATTCTTAGATCCTAAATCCAATGGTGTA TAATCCTGGTCCACCGGTGGACCAGTTTTCTTACTTCCCCACCCTAGTGGGAACCTCAGATTAATGCCCTGTTTAGAAGA GATCTTATTTGAGCTTATTTGATAGCATAAGCGTTTATGTTAATGTTTAAGAGAGTTTGTGCAAATAGTTTATGGCTTAC CATAAGTTGTTTTGAGCCTATTTTTAGTAGCTTATGAAAAAGAGTTTATGTTTATATATAACTTATATTCAATTTATTTC AATAATTTTTTTAAAACAGCTTATGAATAAGCGCTTATGTCATGAGCTCTTATGGTCATAAGCGCTTAATTAAGCTGTTT TCCCAAATAGGACCTAAGCTTTGTGCGTGAGAGAGTGAAAGAGAAGGAGAGGTGAGAGATGGTCTTGTGCTAGTCGATAA TGTAGTTGACTGGTGGAAGTGAGAGCGCGTAAAGCGCTGAAGGTACAACGGTGGAAATCAGTTATGTTTGACAATTGTAT AGGGTTGATGGAGTGTCAGTGTGTTTAGGTTTTTGAGCTTATGGGTATCGTGGTGTAGTCGATAAGAGTGGGGACATTGA AGAGTTAGTTTGTGTTTTGGGGCTTGGCCCCTTTAACAAAAAAAATATAATGGTAAAATTTAATTTCAAGTATGTTAATA TGTTATAATTATCGATCAAGACAATGTATAAATCCCGAACCACAAAGATATATATATATATATATATATATATATATATA GATAGATAGATAGATAATCAACCTCTCTAAAACTTTAGTTGGTAAAGAAGAGAGATAGAGAAAAGAGAAACATACTTTTT GTATTTAAAGATACTTTTATCCAACTTTATTCCTGGCGGTTTTGACACATTTATGGCGGTTGGAAACTGCCACAAACCGA GTAAAAATATAAAAAAAAAATATGTCAAATTAGGTTTCTACACCTTTCTCGCAGTCTAAGAACAAGTTCTGGTGGCAATC TCCATTTGTCTCCAATTTGGAGAGACTCCAAAAAGTGAGAGGTCCTACCACTTTTGCTTTCTTTTATCTCCCTCCTCTCA CTAACCAAATAAGAGTGATTCTTCATTTCCCCTCTATCTACCTATCCTCCTTCTATCTTGGTTTAATTGCACTTTTCATC CCTGATCTATACCTCTTGAGCAATTTTGGTACACCAGAGATCTGGATGTGACAATTGGATCATCCCTAGTGGTGTAATTA GCAAAAAGGAATCCAGAAAAAGAATATTCCATTTGAAATTAAACGACAATTGACGGAAGGACCCAATTGTAACGCCCAAA TCTTTGGTGTACCGAAATTGCTCCTTTTAAACAAAGGGGACCAAAATTTCACAAGAGGTATAGATCAAGGATGAAAAGTG CAATTAAGTCCTCTATCTTCACTATCTCTTCCCTAACAAACAATTCTCGGGTGTGGTTCCTAGGGGTGAGTTTTTTTTTA CTATAATAACTGTTTTTTTCTTACAAAAATTTAGGGTAAAGGGAGGGTGCCCCAGTTTCAAAGTAGGAAAGCTATCGGGT TCAAATAATACTTACATTTACGGATTTGCCTCATATTAAGAGAACTAGTGTAAGACCCTCAATTTTGTTGTTTTGTTGAC TTTTATGTTGTTTTGCTTATTTGATAGTTTACTGTTATGTTTGAATTATTAGAAATATTTATGAATTGCATGAAATAATA ATATTTTCCTATGGAAAAATAGTTGATTGATTTAAATAATTGTTGTAGTGGTGATTTTTCAATTTTAGAAGTGTAATTGT GAGGGAAAAACCGAAAATTGGAGAGGGAAATGAGGAAATTAGTTTAAATAAATTAAAATAATTATCTTTAGTTAAGGGAA GGAAAAAAAAATTTAAAATACCATTTTAAAATTGAAATTTTCGTGGTTTATAGGTATGAGGGAAAAAGGAGTGTGTTGGT GATTTATCTCTATTTTAAAAGATATAATCTTGAATCAAATCTTGACAAATCTTTTTATAAGGAAAAAGAAAAGATAATTT CTTGTAAATTCAAAAATAAATCTGAAGTGAATGATATATTTATCTTGGAAAATAAAAAGATTTATTTTAGAGTTTTTTTT AATTCTCCAATAAATACACAAAATTCGAAAAAACATAGTAATAGGAGAAAAATGGTTTCTTGATGACCAAATTAAAGGAT TGACTGATCTTTTGAATTAAAAAGCCTAGGAGATAAGGATATTATATTATTTCAACTTACTTAGGATAGAGATATAACCT TTAGTTTAATTTTTAACTGAAACAGTTGTAGATTCTATCCGAAAATTCGAAATTCAAGCACTTTTGAACAAGATTTGAAA TCTTATGAGATAGGAGGCTTTTGAAACTTAAAATCTTAGCTTCTTGGGTTGTTATGATCGGAATTTTGAAGCCTTGAGTC TAGAGTTGGATTATTTTTATAAATATGGTCCTTAGTTGTGTAGAAATTCATTAACCTTGAAGCTGCAGTGCTGCTCAAAC CCCTCTCCTTCCTCTCTTGTTGATCAAGCTTTGGTTTTCTTCTTTTCACTCGGAGAAAAAAAAAAGTTCATTGAAGATTC TAATGGAAGGAGAAAATTCAAATTCCACCCAACATCATCCTAAGAGCAAAAAAAAGTTCATTGAAAAGTTTTTCTCGGGC TGTATGGTAGTGAAAGTAGATGAAGATGCTACATCTGAGATTACAGAATCAAGAACCCCTCCACCACCTTCTCCAACAAG GAATTCTTCACAAGTTCACCTTCTAAGCCAAAGAAGATGTCTTTCTAGAAAGTGACTGAACATTATATTAGTGAGCAATG TTCTCTAGTGTGACATTAGGTGTGTTGTACTTTAGGAAACTCATTTATGTAAAATAAGTAGTAGCACTGATTTATCCTAG TTTTAGGAATATCGGTATTACTTCTGAAAATTAATTTTACCTTTTGGTATGCGATAAATATTTTTAGGAATTTTGTTTTA TTTATTTAGATTTTTTGTGTGATTTGAACTTAGTCATGAATATCAGTCTTTTTTGAATTTATGCTAGGAGTGAATGCATT TAGG
CDS sequence (LotjaGi4g1v0221800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGGCCACTACGAAATTCCCATAAGGAAAGCTCCCAAAGCTACGACAATTTCTTAGATGTTTTACCTGATGACCT CGTCGTTTTCATCCTCTCCAAGCTCGCCTCCACCCTCTCTTCTCCTTCAGATTTCACCAACACCTTATTAACATGCAAAA GATTCAACAGCTTATGTTTTCATCAACTAGTATTATCAAAACTCAGTGTCAAAGCATTCGCCATGAAGCCCAAAAATTGG TCAGAACCGGCTCACAATTTTCTCAACCGTTGTGCCAACGCCGGCAACCTCGACGCCGGTTACACTCTCGGAATGATCCG TTTTTACTGCTTGGAAAACCGTAAGAGCGGGCTTTCACTGATGGCGAAGGCGGCGATGAAGTGCCACGCGCCGGCGCTGT ACTCCCTGGCGGTGATACAGTTCAACGGCAGCGGCAGCACCTCCAGGGATCTGAGAGCCGGCGTGGCCTTGTGTGCACGA GCCTCCCTCCTCGGCCACATCGACGCGCTTCGCGAGCTAGGCCACTGCCTCCACGACGGTTACGGCGTGCGCCGCGACGT CGACGAGGGGCGCAAGCTGCTCCTCCAAGCCAACGTTCGCGAGCTCGCGTTTGTGATGCACGCGGTTACTCAATCTCCCT CTTCCTCAACCTCGCTGCTGACGTGGCGCGATTGGCGGTTACGGGACTGCAAGTACCTCGCGGAAGCGGTTGGCTCGTTG GGCGGTTACGACGGTGGCGCGGTGCAGCCGGTGGATTGGTTCATGAGGGAGTGGTTTGAGTCAGGTTGCGGTGGTTTGGG GGAGGGGCTGAGGCTGTGCTCGCACATTGGGTGTGGGCGAGTTGAGACGCGGGCGCATGAGTTCCGGCGGTGTTCTGTTT GCGGCAAGGTGAACTACTGCTCGCGGGGGTGCCAGGCGGTGGATTGGAAGCTCCGACACCAGATGGAGTGCTCGCCGGTG GAAGTTTGGGATGAGGACAACGGTAACGACGGCGGTGATCTCGAGATGGGGAATTAA
Protein sequence (LotjaGi4g1v0221800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRPLRNSHKESSQSYDNFLDVLPDDLVVFILSKLASTLSSPSDFTNTLLTCKRFNSLCFHQLVLSKLSVKAFAMKPKNW SEPAHNFLNRCANAGNLDAGYTLGMIRFYCLENRKSGLSLMAKAAMKCHAPALYSLAVIQFNGSGSTSRDLRAGVALCAR ASLLGHIDALRELGHCLHDGYGVRRDVDEGRKLLLQANVRELAFVMHAVTQSPSSSTSLLTWRDWRLRDCKYLAEAVGSL GGYDGGAVQPVDWFMREWFESGCGGLGEGLRLCSHIGCGRVETRAHEFRRCSVCGKVNYCSRGCQAVDWKLRHQMECSPV EVWDEDNGNDGGDLEMGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 335 | 326 | 1.5E-152 | – | |
| PANTHER | 10 | 335 | 326 | 1.5E-152 | – | |
| SUPERFAMILY | 10 | 78 | 69 | 1.57E-7 | ||
| Gene3D | 66 | 210 | 145 | 5.9E-17 | ||
| SUPERFAMILY | 74 | 197 | 124 | 1.22E-12 | – | |
| Gene3D | 268 | 319 | 52 | 3.7E-9 | – | |
| SUPERFAMILY | 272 | 320 | 49 | 1.53E-9 | – | |
| ProSiteProfiles | 275 | 317 | 43 | 10.859 | ||
| Pfam | 278 | 317 | 40 | 7.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0221800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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