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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0224500 |
| Transcript ID | LotjaGi4g1v0224500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prefoldin subunit 6; TAIR: AT1G29990.1 prefoldin 6; Swiss-Prot: sp|Q03958|PFD6_MOUSE Prefoldin subunit 6; TrEMBL-Plants: tr|I3SKF9|I3SKF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0224500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53029269..53032657) extracted from Lotus japonicus Gifu genome v1.2.
CTGCACAGCATACTTTCCCTTCCCTTCGCCGGTGAGTTGTCCCTCTTCCTACTTGTCTCTATCTCCGCTCCGTCGTTCAC TCTTTCTGGTTTCTTTTGTCTCAGATCTCTCGCGGCCGTTTCCCCCATCACTAACTCCAGGTATTGCGATTTCAATTTCG CATAGTTTAGTGCCGCATCTTGTGTTGTTTTCAGCACATTTGAAGTCTTTGATTAGGGATTTTGTGGAATCATGATGCTT AAAAATTCCATGTGCATTTGTGTTTTAAATGGGAAGTAGTCAAGTTCCTTGTAGAGAGCTTGAAATTTTGGTTTTATGCG AGCACTAGTTTTGTGACTTTGAATTCTTCAAAATTTGGCTATGATGTTAGTTTGTATTTCAAAATTTTAGTATATATGGA AGTAGATTAGTCATGCTGTGTAATGTAAAGGATTTACCATTATGCTAGCATATAGTTTTTCAATTATGTTGCGTGCTTTT TATTATCTTGTGTTCTTTTCTCTTTACCTTTCTATAGCTACTACCAATTATTAATGTATATGCCGGCTCTATTTTCATGT AATATGAAAGGGAAAATATATTCACAAAGGGGGCATATGAATAATAACATCTGGGTTGGAAAAATTGTGATATATAATAG TAAAATTTTGTCTGTTTGTTTTCTCATTCATTTTTCCTATATCCCTTGAAGTAAGTTAAAGTTGATCAACACGAAGAATA CAATGAGTTCGTCCAACATTAGAGATCTTCAACGTGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGGC AAGCTTCCTTCTATTCTACTCCAACCCACCCGGGACCCCCCTTAGCTAATTCCTTCATCAATCGTTCTGCAGATATTGCC AAGAATCACCAAGTTAGAAAGAAGTACACGGTTCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGTACCCTTTTGTCAAAC CTTTTCTTTTTTAGTTGTAATTGTTATCCTTCTGCTTTGCTCTCATTTCTCTGACTGTTATTTCTCTCTTTTTCTTTTAA AGGAACTGGATTTATTGAAACAAGACGCAAATGTTTACAAGTTGATTGGCCCAGTACTTGTTAAGCAAGATTTGGCTGAG GCCAATGCAAATGTCCGCAAAAGAATTGAATACATCTCTGCTGAACTGTAAGCTTCTTTTCTACTTTTCTGGGTATATAT ATATGGCTTTCTTTGCTTTGAATTCTTGTTTACGTATGATTTGCCACCCTACTTTTTAAGTAAACGCAGCTCTGCCCAGT GTACGGGACACCCGCCACTGTGAGGCATGGAAAGACTCACTCAGCTTCTCATTGTGGAGAGGTTGTTTCTATGACAAGAA CCTGAAACTGATTAGACCATTGAGCCGGAGGAAATAAAGGATAGGTAGACATTACCAGATCAGCAGGTAACAAGTGTGCC CAGGGTGTGAACTGTGGAAGCTATGTTCTAGGAGAGATAAGGGGGTGGTACATGGAGGGGAGACTGGAAAGTTAGTTATG CCGAGGTGGCAGTACTTCTTTCGAGGCGTGGTTGAAGTGAGAAGATAGTTATAGGAGCGAGGGAATTGGGGGTGGGGGAG TAAGGATTGATCACCTTCAGTATTGCGGCCTTAGGCTTGGGCAAGGGAATGGATATTACTTTGTGTTCTGCTATTTTTCT TTCTTTCTTCAGAGTTCCAAGTTCAAACTCTATCTTGTAATTCTTTTACCTTCCAAAGATTAATACTGAATACACATTTC CATTTCCAATCCTTTTTTCTGTTTATTATCCCTATCAGTAACAATTAGGTCTTAAGGCAGCACATTTGTGCTAAGGCTCA CCTGCATCCTTACTTTACACTACTGCAAGTTCATGTTGTTCAACAGTCTTGTTTCCTTTTATTATTATAAACTTATTTTG CATCGTTTGATATAGTAATCCAGTTGGTTTAAGAACTTCATTTTGTTACTTTCCGACTGTAATTCTCACAGGATATTTTG GACTTAAAATCCTTGTTGCCGCCAGTGAATCTGCATGACCGTGCACTTTAATCTGCTTTAACATGAAGTTTCTGTCCTGA CACCTCTAGATTATTGTTTATGTGTGAAATATCCACACATAAATGCAAACCTGCTACTCTTCTAATGTTTTATCTTGGTT GCTTCATAGCTTTGACTAGAATTGTTAGGGTGCATATGAATATCTAAGTTCAGTTCTATACTGAACAAATTAATGAATTA TATATGAAAATACCATTTAGCGTGTTGATCATATCTAAACATGACATTGGCAGAGTTGATCAACTTGCTTATTTTGTGCT TTGCTGTAAATCTTCACATAATCAACCCCAAGCCCATATACAAGAGGAGGGTTTTTGAGGTAGTCAACAAGACAACAACC AGCATAAATCTTTATCAAATCTTTATGGCTAGGGAAAGCACAACACCCCTATTAATACTTATTCTCTTTGCTTCCTTCCT TTCCCTCATTTGTGAGACTGTTTTATTATTGCTGGCTTGCTGCATGATTTATTTGTCACCTTTTCATTCTGTTATGGTAT GGACATGGTTGTGTTGGTTCGGTATCTTCAGCGTTTTACAATTTTTTATTGCTGTCATACATAAGTGGTATTTGTGTGTC AGGAAGCGTCTTGATGCCACGGTTCAAGATTTGGAAGAGAAGCAGAATAGCAAGAAAGAAGCGGTCTGTAACTTTTCCTT GCTCACCTTTTTAGCTTTAGTCTTGCCTCTTATATTGTTTCTCGAGGAAAATAAATTTTATTTGGTGGATCCTAGTGAGT GATGATTAAATAGGCCTCTAGCAAAATAATCCTTAGGATCCCCTACCTTATGTAGGAGAGAGTCTTAATTCCCACCCTGC TTATGTGAATGCCCAAACGCCGCTGTGTGAGAAATTAAATTAAATAGTCTTCTGGGCTGTGGAGATCATCCATGTTAAGA GAACAGAGAACACATTATGTTTTGTATTAGCTTTGAGTTTGTATATGTCACCACATGCTAGAATGGACGTGTTAATCTCT ATTTGCATAGTACTGATCAGATCTTATTTTTTATTATCTTGCAGATAATGAAAGTGCAACAAAGGATTCAGTCTCTTCAG GCCGGGAAAGGCAAAGCATAGTTTTCCCTGACAGATTGTTTCCATATTGTAATTTTTATAGTGCCTAGATTGCATGTGTA TTTGTGCCTTTTGTTTTGGAATGAAGTTGACTGTGGTGTGTTCTTGGAATCCGTTTGGCATATTACACTGATGATGGTTT AGCGTCTTTAGCTCCGTTTATTACTCCCTCATGTCCTTATTATAAGAAAAACTTGGACAAAATCACCCAAACCAAGGAAA CTAATATTTTTTATAAAATTAACTACTAT
CDS sequence (LotjaGi4g1v0224500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCGTCCAACATTAGAGATCTTCAACGTGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGATAT TGCCAAGAATCACCAAGTTAGAAAGAAGTACACGGTTCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTAT TGAAACAAGACGCAAATGTTTACAAGTTGATTGGCCCAGTACTTGTTAAGCAAGATTTGGCTGAGGCCAATGCAAATGTC CGCAAAAGAATTGAATACATCTCTGCTGAACTGAAGCGTCTTGATGCCACGGTTCAAGATTTGGAAGAGAAGCAGAATAG CAAGAAAGAAGCGATAATGAAAGTGCAACAAAGGATTCAGTCTCTTCAGGCCGGGAAAGGCAAAGCATAG
Protein sequence (LotjaGi4g1v0224500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSNIRDLQRELENKANDLSKLQKDIAKNHQVRKKYTVQLGENELVLKELDLLKQDANVYKLIGPVLVKQDLAEANANV RKRIEYISAELKRLDATVQDLEEKQNSKKEAIMKVQQRIQSLQAGKGKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 129 | 127 | 5.7E-56 | – | |
| Coils | 6 | 26 | 21 | - | – | |
| Gene3D | 6 | 122 | 117 | 5.9E-32 | ||
| SUPERFAMILY | 12 | 117 | 106 | 1.57E-25 | – | |
| CDD | 13 | 117 | 105 | 4.50025E-17 | – | |
| Pfam | 15 | 117 | 103 | 2.3E-22 | ||
| Coils | 84 | 118 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Cellular component | Prefoldin complex | A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi4g1v0224500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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