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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0226500 |
| Transcript ID | LotjaGi4g1v0226500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Centromere protein X; TAIR: AT1G78790.1 centromere protein X; Swiss-Prot: sp|Q2NKU0|CENPX_BOVIN Centromere protein X; TrEMBL-Plants: tr|A0A072UQV7|A0A072UQV7_MEDTR Centromere protein X; Found in the gene: LotjaGi4g1v0226500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53595616..53598639) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTTATTTTTCTCTTCTTTATCAATCAAATCACATATCACATCTTTACTTTCTCTCTCCTTTCTTCCTATCTCTCTCT TCTTCCACCTCTCCACACCTCAAAAGTGAGGTGTGAAGATATAATTATTCGTTCAGGATAGGGGCGAGGTTACGTCCTCT AGCTCAGGCTTGACCCATATTAACAAAAGAAAAATAGTTATATTGATTTTTATTTTGTTACAAAAGGAAATTAAACAAGA ACTAGTTAACTTGGCTAGTATTTTATTTCCCATTTTCCCTCCAAGCGAGTGCGGTTTCATTTGTGGTGGCGGTGAAGTTC GAATTGCAGGAATCACAATGGAGGAACCCACCTTTGAACTTGTACAGTTCTATAACCCTTTCCTCCTTCAATTCCACTTC GTTTTTCTCTGAAATTCCTCACTTCTTCATTCAATTTGTTTACGCAACTCGCAGGATCTGATTCGCTCCATTCTGAAGCG CGTTTGGGAACTGCGGGCCCTTGGTTGGTTGCACTCACACCTTGATTCTTCTCCTTTACTTCTCACTTTGTAGGAATCAC TACTACAATTTTTGTGTTTCTGTGTGCAGAGCGTGAAAATGTTGGACCCAGCGAGGCTTTGGATTCTGAGGTTTTCTAAT TCGCACCCTTCCCTAATTTACCTCATTTCAATTCTAATTTCTGTATCTTTGTTGGTTGAGGATGAGTCTTTAGTGTTTGT TTCTTGACATTAATTTCAATTTTTGAATTACCTCTTTGTTGATTTTTGAGATTTTGGAACATTGGAATGGTTTTGCCTGC TGTTGATTTATTTCCAGCAATTACATGTTATCGGTGACGGAGTATCTGAATTTGAAAAAGAAAAAGGGGGAAAATGGATA TCTTCTTATAAAACTGCATTGGACTTAAATTCTATACCAAGTTTCTGAAGTTTCTTAGTGTCTATTAACAGTAGTTGGAG GAGTAAAATCTGAATTCTCATTGATTGAATCTGTTTGCACAGTTTATATACAAGCTTAACTACTATTCTGTTACAACAGA TAGTTAAAGTTAACTATCAATATGGAAACTAAACAATTCTAACTACTATTCTATTACTAACAGAACTGCTTATACTTCAA TACTGTCCATATCTTTGTTGGCACTGGTTATGTGATGCAAGACTATGCCTGTGGGCTGTGGCCTATTGCTCTTGTTAGCA CATGGTACAGGACTAACAGCAAATTGTTTCCTGCATGCATTTGCTCAACTTGTTTTTTCATCCACTTATTAACTATGCTA TCTGCATTTGGTTTTCTTCTTTTTTTCTTATCAATGCTGTGTTGATTTTGTTCTAATGTTGTTTTGCACATAAGAACCAC TAAGTCTTGCTCGCGAGATCTTCCAATTTCAGCTACTTTATGGGCTACAAGATCCCCACCCTACATATCATCATCTTCAG TCACACTTTGTTGATCTACTGCATAAGAAGATAATATCTGCCCAAAAAAATTTCAATTGTTACTTTGATCACATCTTCGA ATTTTTTTTAACTTGAGACTCTGAACATATAAATCTAACTGGCCTCAAAGTTTCCAAGTAGACCATTTGCTAACAGGTGA ATTAAGAGCTTTCTTTGGCCTCAAAACATGTATAGTTAATTGTGGTGCATTTATATAAATTCAAGGCAGTTTTATGTTGG TTTTGGTGATATATGAGAGATCTGTGTAGCGAACACAAAATATTAGGGAGTGTTTTTTAGTATATCATACTTGTAAGTCG TATATAATGTTTGGTAATGGACCTTTTTTTCTCCGAATGTTTCCCTTTCTATTTCTGTTCTTCATTATTTATGTTTTGCC ACATTTGTTTTCAGGGTAAGGTGGTTCTCAAATTGTTTCACATATAACTTGATCCTCAAAATAAATTTTGTACTCTATAA CTTAATGGTTGCCACTTGCCATCAATAGCAGTAGCATCCTCAGGAGGATCTACATTCTCTGAAATTTTATTTATTATCCT TGATTATGAATATCTGCTGCTAATTTGTTGCATTGTGTGTCAATAATCACAAATGGATTTTACTGCTCCAGGTAGGAGCT GGAACATCCAAGAAAAATCGACCAACTTCAGGTATTTTTATGATGATGTCATTAACATTCTATTGAAAGATATCTTTTTT GGTTGAGGTTCTGTCATGATGTCCACTATAGTAGCGTTGATATTTCAAAATGGAAATATTCAAGTTACTACTTACTCATC TGTCCATATTTTTCCATGCAGCTAATGCGAATGCTTTGAAGCTTACCTGTGAACTTCTCCGAGTTTTTATCACAGGTTCA TCTATGTTAAAAGTGAAACACATTTGTGCTGGTTTAGACTATGATTTTTCACATATTCTGTATCATCCTGACAAAACATT TCTGTTGATGCAGAGGCTGTTCAGCGTGCTGCTGAGGTTGCAGAGGCTGAGGGTGCTAGTCAAGTAGAAGCTTCTCATTT GGAGTGCATTCTTCCTCAGTTACTTTTAGATTTTTAAAGCATCTGAAATACTTATATGGAACTTCTACTTCCCTCTATAA TCAATCTAGTTTATAGCTCACCAAGATTTGTTGGTGAAAAGCTATATTAGATACAACTAAGAAATCCAAAGAGAGCTTGT TTGGATATATGGTTAAAGTGTTAAACCTTCCAGAATCACTTCTCTTCCTGCAAAAGCTACTCCTAGTAGCTTCTCTCTTA GTCATTTCTCCTAATGTGGAAATCCACCGTGTATCGGGGTGAGAACTTTGGAGTCTCTTCACTCTCTTTTCTTTCTATTG CTTGAGTGCTTTTTAACTTCTTGATTAGTGAAGCTACAACAATGGAGGAGGGATTGATTTTCTTGTGCTTAATCCTTGAA AAGTAATATTCAAATGATTTTTTGGATCAATACCTTATCAAAGTGCAAGCTAACTGCTCTTTGTTGGACTAGACAGATCT TTACAATATACTCTTTTTATTTATATGGTCAGGAAGGGTGGGACTGAGCTCTCTGTGATGAAGG
CDS sequence (LotjaGi4g1v0226500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAACCCACCTTTGAACTTGATCTGATTCGCTCCATTCTGAAGCGCGTTTGGGAACTGCGGGCCCTTGAGCGTGA AAATGTTGGACCCAGCGAGGCTTTGGATTCTGAGGTAGGAGCTGGAACATCCAAGAAAAATCGACCAACTTCAGCTAATG CGAATGCTTTGAAGCTTACCTGTGAACTTCTCCGAGTTTTTATCACAGAGGCTGTTCAGCGTGCTGCTGAGGTTGCAGAG GCTGAGGGTGCTAGTCAAGTAGAAGCTTCTCATTTGGAGTGCATTCTTCCTCAGTTACTTTTAGATTTTTAA
Protein sequence (LotjaGi4g1v0226500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEPTFELDLIRSILKRVWELRALERENVGPSEALDSEVGAGTSKKNRPTSANANALKLTCELLRVFITEAVQRAAEVAE AEGASQVEASHLECILPQLLLDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 103 | 103 | 1.2E-32 | ||
| MobiDBLite | 29 | 51 | 23 | - | – | |
| Pfam | 46 | 103 | 58 | 6.0E-16 | ||
| Gene3D | 62 | 103 | 42 | 1.9E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Kinetochore assembly | The aggregation, arrangement and bonding together of a set of components to form the kinetochore, a multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules. |
Expression pattern of LotjaGi4g1v0226500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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