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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0227900 |
Transcript ID | LotjaGi4g1v0227900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein prune; TAIR: AT1G34540.1 cytochrome P450, family 94, subfamily D, polypeptide 1; Swiss-Prot: sp|Q58025|PPAC_METJA Manganese-dependent inorganic pyrophosphatase; TrEMBL-Plants: tr|A0A0B2RIF2|A0A0B2RIF2_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0227900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53768057..53769643) extracted from Lotus japonicus Gifu genome v1.2.
GTTGACATGGAAAGCCTTTTGGTGACTGGCCAACTGAGTGTCCTCGTGGTTGGACAAGATGTCTTAAGCACCACTAGCGA GGTTTGCTCATATGAATTATTGATGAATCTGAAAATCAATTATTAAAATTAACAAGATTGATCCCAAGGAAATGTGCACC ATTAGGACTAAATAATGGGTTTGAATATTAAAATTAATGTAATGTCTTACTTTGTTCTACCAGGTTGGATCTCAATGCAC CATTCTAACCGATAATTACTGTGAGGATGCCTATGATCTACTTGACAACCCTGTCCTGAAGAAATTATTGGTAAAATTTT TACTTAGCTTCGTGACAATCTTGTGATGAGGCACTAGAGCTAAAAATGTAGGTGAAGGCAGGTGAAAGATTTTATATCTA GGACTAATTAGATTATTCTCTGCTTATGTATTATTTTCCAGCTTGCTGGTATTCTGCTAGACACACAGAATCTAAGAGCT TCTGCAACAATATCCATGACAAGAGATGCAGAGGCAGTTCAATTGCTATTAGTTGGCTCACCCCCAAACTACAGATATGC TTTATATGATCAATGTATGATTCATGCTTCTCCAAATTTAAATGACTTATATATAGTGAATTTACTGATCATCAAATCCA ACTTATGAAGTTGTTTTCTGTTTCTTGAAGTGATGCAAGACCAAAAAGGTACTTCTTTTGTTGAAGCATTGAACCATAAC TATGGGAGGCCTCATGAGGAAAGTAAGTATCCATACATATTGTTGCCAAATACAATCCCATTACTTCATTCATGTTATTG ATATTTCACAATCTTGTATTGAAAGTTTGAGTATTTATTCTTGTGAATTACAGGTGACCAAAACAGTGAAGGACAGCATA AGAGAAGGTCAAGCTCTACATCTGAGCGTGACATCATCATGTCAAGTTCAAAAACAAGCTCCATAGACACAAAAGGTATA TTTTGAACTCATGATTTATGAATAAATGGATATTCTAAGAAGAATATTTTTTCACCTTGTACCAACTACATGTAAATGTG GTGATAACACCTTGATCTTTGCAGTTAAGCTTATTACGCCACCTATTCAATCTCCTAGTCCAGCACCAGCACCAGTACCA GCAAATGCTGCAGAAAGGGAAAACTCTCGTGGGAAAAACACGTTCTTCTTGGCAAGGTGGTTTGGTTTTGGTTCAAAATG AACTAATCTCCTATTAATTTGTATGCCAATGGCAACTTAATTTTGCAAAATTTAATACAGAAGATAAGAAAAAGAATGAA ATGGAGATATTGTATTTTTTTCCCCTTGATGCTTGGCACATTCTTGAAGATAAGTCTCTAGCTACCGAGTGTACATGTAA ATTTAAAATGTTCTTGTCTTCTTTTTATTTTGGCTGGAAAATGTTCTTGTCATTCACTTAAACTTTGTGCTTAGAAATAA CATGGCGCCCTACCAATTATTGTTCTTTGGTAAATCAGCCCTGGCCCCTTCGCCCCTGTATTTTTGAATCTTTCATTACT TTGTTATTTAGTGTGTGTTAGTAGCCCTGGCACATTCTTGAAGCTCAACACACTCATTTTCTTTCAA
CDS sequence (LotjaGi4g1v0227900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGCCTTTTGGTGACTGGCCAACTGAGTGTCCTCGTGGTTGGACAAGATGTCTTAAGCACCACTAGCGAGGTTGG ATCTCAATGCACCATTCTAACCGATAATTACTGTGAGGATGCCTATGATCTACTTGACAACCCTGTCCTGAAGAAATTAT TGCTTGCTGGTATTCTGCTAGACACACAGAATCTAAGAGCTTCTGCAACAATATCCATGACAAGAGATGCAGAGGCAGTT CAATTGCTATTAGTTGGCTCACCCCCAAACTACAGATATGCTTTATATGATCAATTGATGCAAGACCAAAAAGGTACTTC TTTTGTTGAAGCATTGAACCATAACTATGGGAGGCCTCATGAGGAAAGTGACCAAAACAGTGAAGGACAGCATAAGAGAA GGTCAAGCTCTACATCTGAGCGTGACATCATCATGTCAAGTTCAAAAACAAGCTCCATAGACACAAAAGTTAAGCTTATT ACGCCACCTATTCAATCTCCTAGTCCAGCACCAGCACCAGTACCAGCAAATGCTGCAGAAAGGGAAAACTCTCGTGGGAA AAACACGTTCTTCTTGGCAAGGTGGTTTGGTTTTGGTTCAAAATGA
Protein sequence (LotjaGi4g1v0227900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESLLVTGQLSVLVVGQDVLSTTSEVGSQCTILTDNYCEDAYDLLDNPVLKKLLLAGILLDTQNLRASATISMTRDAEAV QLLLVGSPPNYRYALYDQLMQDQKGTSFVEALNHNYGRPHEESDQNSEGQHKRRSSSTSERDIIMSSSKTSSIDTKVKLI TPPIQSPSPAPAPVPANAAERENSRGKNTFFLARWFGFGSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 16 | 16 | - | – | |
PANTHER | 1 | 197 | 197 | 3.5E-76 | – | |
Phobius | 1 | 3 | 3 | - | – | |
PANTHER | 1 | 197 | 197 | 3.5E-76 | – | |
Phobius | 1 | 16 | 16 | - | – | |
Phobius | 4 | 12 | 9 | - | – | |
Phobius | 13 | 16 | 4 | - | – | |
Gene3D | 15 | 104 | 90 | 6.1E-9 | – | |
Phobius | 17 | 201 | 185 | - | – | |
SUPERFAMILY | 21 | 117 | 97 | 1.06E-6 | ||
MobiDBLite | 116 | 139 | 24 | - | – | |
MobiDBLite | 116 | 185 | 70 | - | – | |
MobiDBLite | 140 | 162 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0227900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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