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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0229300 |
| Transcript ID | LotjaGi4g1v0229300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT5G47740.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52; TrEMBL-Plants: tr|V7CDL8|V7CDL8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0229300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53914687..53916669) extracted from Lotus japonicus Gifu genome v1.2.
CAACGAGCTCTTCATATAATTCCAATTTAGAACCAACCAATTCATTCTCTTTCTACTCCTTCTTTGTACTTAGTAAAGTC AGGGGAGAGACAAAGAGGCACAGATATGGAACATAAGGATCACACCCCAACAGTGGCAAAGGATTACTATTCTAGATCAA TATGGTGGTCACAAACTGCGCCTGCTGTTGGGGATCACAAGAGCAGTGACAGAAATAAAGTTAATGGTATTTATTTTGCT GATGGGAAAGATTGGTATAATAACTCCCAAGAAATAGTGACTCCTGAAATTTCTGATACATTTGGAGAACTCAAAGATTT AACTAGTACAAGAAACATAGTTGATGAATTGGAGAATGGCAGTGATGAAATCGGTGAGTATAGCCGCTATACGAGTAGAA TGTTGTCGACAGAAATTGTGGAAATAGTTGAGGATGGCAGGAGCATAACAGAAAACAAAGATAGAAAAGTTGATGATCTT TATGTGGCTGTTGGCAAAGATGACTTGGATGTTGTGAAATGGGCTCTTGATCATGCTGTTTCTCCTGGTTCCCGGATTTT TCTTGTCCATGTCTCTCCTCCAATCACATTGATTCCTACGCCAGGTAATTAACCTTTTCGTCTCCTTAGATAGCATGTTT GAATCAACTTTTCTTTCATCAGAACCAATTATGAAACCGAGAAGCAGTTCACATGAGCTTATCTCCAGAATTTATTCTCT CCATAACTCATTCTGGCTTCACATAAGCACTCATTTTTATAGGAAGTCTTCAATTTGAGTTTAGTATATTATACTGAATC ACAAAAAGCAGATTTCAGAGAGGACTTCTGCTTTGAATTTTGTTTACTTGACACCTAGATCTTAAGAATAAAATGATAAT ATAAATGTCTGCATACGTGATTCTGCATTCTGCATGCATGTTTGGAAACCCTTTTATAATTGATTTAGAGGCCAAAATCA AATCTGGAGAAAAGATGAGTAGGTTCTGGTTCTGAAATTGATTCTGATCAAATAGAAGCTGATCCAAGCATGCTAGCCTA ATGAACTTTTATGGGGTATCAAGAATACATCTAAATTGCTGATAATGATATATGTGATAGTTGGAATGTTTGAAAGAAGC CAATTGGCCCCAAACCAAGTGAGACTTTACATCAATGAAGTGCACAACAAGAGGAAGGATCTTTTGCAGAAGTACATCCA AATGAGTACTGAAGCCAAGGTAGTAGCTAGTTGATTAGTTTATCTATGACATGAGCATGATATACACCAAAACATCCAAA TGAGTACATCCAAATTGATATTATTATTTGTCCCCATGTTCTTCTTTAATTTCCTGTCCCAGGTTGCTGCAGAAACATTG CTTCTGGAGAGCAATGACACAGGAAAAGCCATTCTAGATCTTATCTCTATTCTTAACATCACCAACCTTGTGATCGGAAT AAAAAAGCTACCCTATTCACGGTATGCTACCATTGGTTTTGGTTAGATTAATTTCAAATGGGATTGTCCTGCTTGATACT AACATGTAAATGAGCTAGTAATGTCACAAGCACTTGCTTAAGGTTATGGATTATTTATCTTCTTTTTTCTAAATTCTAAT GAGCTATCTTATTTATGCAGGCGCAATAATAAATTGAGCAAAGGAGAGGTGGTAAAGAAAAATGCACCCCAGTTCTGTGA TGTTACATTGATTTATAATGGCAAAGTTTTGGTGTCTGACCCTTACGAGGATGAATTGGCATCCCATGACCCTGCATCAG AAACCAACTCCTCTCGGTGCAAGTGTTTTTCAGGGAAGCTACGTAGGTACTTGTGTTATGTCGAGGAGGCATAGATTTCA GCCACACGTGAATGAAGTTCCATCATCTGCTAATTAACTAGTATTATATTCTGTACCTTATAATTATATTTGCACACAGC AATTCAAATTTTTATGGCCTCTGAGTTTGAAAAAGATCTACTGAAGAGGAATGAAGTAGGGAG
CDS sequence (LotjaGi4g1v0229300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACATAAGGATCACACCCCAACAGTGGCAAAGGATTACTATTCTAGATCAATATGGTGGTCACAAACTGCGCCTGC TGTTGGGGATCACAAGAGCAGTGACAGAAATAAAGTTAATGGTATTTATTTTGCTGATGGGAAAGATTGGTATAATAACT CCCAAGAAATAGTGACTCCTGAAATTTCTGATACATTTGGAGAACTCAAAGATTTAACTAGTACAAGAAACATAGTTGAT GAATTGGAGAATGGCAGTGATGAAATCGGTGAGTATAGCCGCTATACGAGTAGAATGTTGTCGACAGAAATTGTGGAAAT AGTTGAGGATGGCAGGAGCATAACAGAAAACAAAGATAGAAAAGTTGATGATCTTTATGTGGCTGTTGGCAAAGATGACT TGGATGTTGTGAAATGGGCTCTTGATCATGCTGTTTCTCCTGGTTCCCGGATTTTTCTTGTCCATGTCTCTCCTCCAATC ACATTGATTCCTACGCCAGTTGGAATGTTTGAAAGAAGCCAATTGGCCCCAAACCAAGTGAGACTTTACATCAATGAAGT GCACAACAAGAGGAAGGATCTTTTGCAGAAGTACATCCAAATGAGTACTGAAGCCAAGGTTGCTGCAGAAACATTGCTTC TGGAGAGCAATGACACAGGAAAAGCCATTCTAGATCTTATCTCTATTCTTAACATCACCAACCTTGTGATCGGAATAAAA AAGCTACCCTATTCACGGCGCAATAATAAATTGAGCAAAGGAGAGGTGGTAAAGAAAAATGCACCCCAGTTCTGTGATGT TACATTGATTTATAATGGCAAAGTTTTGGTGTCTGACCCTTACGAGGATGAATTGGCATCCCATGACCCTGCATCAGAAA CCAACTCCTCTCGGTGCAAGTGTTTTTCAGGGAAGCTACGTAGGTACTTGTGTTATGTCGAGGAGGCATAG
Protein sequence (LotjaGi4g1v0229300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHKDHTPTVAKDYYSRSIWWSQTAPAVGDHKSSDRNKVNGIYFADGKDWYNNSQEIVTPEISDTFGELKDLTSTRNIVD ELENGSDEIGEYSRYTSRMLSTEIVEIVEDGRSITENKDRKVDDLYVAVGKDDLDVVKWALDHAVSPGSRIFLVHVSPPI TLIPTPVGMFERSQLAPNQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIGIK KLPYSRRNNKLSKGEVVKKNAPQFCDVTLIYNGKVLVSDPYEDELASHDPASETNSSRCKCFSGKLRRYLCYVEEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 87 | 307 | 221 | 3.4E-101 | – | |
| PANTHER | 87 | 307 | 221 | 3.4E-101 | – | |
| Gene3D | 112 | 250 | 139 | 9.2E-8 | ||
| CDD | 126 | 273 | 148 | 2.58445E-29 | – | |
| SUPERFAMILY | 133 | 247 | 115 | 9.21E-10 | – | |
| Pfam | 134 | 241 | 108 | 4.3E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0229300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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