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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0229600 |
| Transcript ID | LotjaGi4g1v0229600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Armadillo repeat only protein; TAIR: AT3G26600.1 armadillo repeat only 4; Swiss-Prot: sp|O04294|IMPA3_ARATH Importin subunit alpha-3; TrEMBL-Plants: tr|I1K040|I1K040_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0229600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53930504..53932934) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTGTAGTAGACTTTACTATTCTTCGAGTCAATCGTGTGTCGACAGAATCGGTAGCACTAAGGAGAATGAGAAGGAAG GAGTGACCCGCAACCACCCAAATCACATTCACACAGTCCACTACCACCACCACTGCCTTCTTCCTTTGTTTCTTCTTCAA TTCAATTTCACGTTCTTATCATCATTCACGAAATTCATTGCTTCTGCAAATTGCAGTTAAAACAGAGTATTCTCTTCTCC GTAAACGATGAAGGGAAACCCTAACCCTAAGCCGGAAGAAGAAGAGAAGCGCCTACAAGAGGAGCTCCTCGGACCGATCC TAGTAGCAGAGCGCGTCATCAAACTAGCGGAGGAAGCAGAGTCATCCAAAACCGTCTGCAGGGAGCTCGCCACCAAGGTC CAAATCCTCTGCGAAAATCTCCGAGCGGTGGTTCGCGCCGTGTCAGCCAACCCCTCTCTCAACGAGAGGCCGATCCGCCG CATGGCCGCCGACGTCTCCAAATGCCTCGACAAGACGCTGTCGCTCGTCCGGAAATGCAGGAAGCAACCCGGCGTGCTCC GGCACGTGTGGTCGATGAGGACCACCGGGGACTTACGAAAAGTCTGGAGTCTTCTAGAGTCTTCCAATGGTGACATGATG TGGCTTCTCAGCATCTTTGAGTCTAAAGGGACTAACCTCTCGCTTCCTCCGATTGCGAGCAATGATCCGATTTTGGCATG GGTGTGGACATACACGTATACTCTCCAATTGGGTAGCGCCAAGGATCGAGCTGAAGCTGCTACTGGGTTAGGTTCTCTTG CTAGAGACAATGACCGGAACAAGTTCATCATCATGGAGGAAGGTGGGGTTTTACCTCTTATCAAGCTTCTTAAGGATTCT GCTTACCCTGATGCTCAGGTCGCGGCTGCGAATGCTCTTGTCAATATAGCTTCGAATCAACTCGGTGTGGTTCGGTTCCT GCTTCCCAGCCTTGCTGTCCCTGCCATTGTTCAGGTTCTGTCCGATTCGCCGTTTAGAGTTCGTGTTTCCGTTGCGAGTT TAGTCTCCACCATGGCTGACCAGGACCCCGTTGCTCGCGAGGAGTTTGCGCGGGCAAATGTGACTAGACCTCTGGTGTCG TTGTTGGCGATGGATACTGTCCTTGCCGACCCCATGGCGGCTCGAACCAGCAGCATTCATTCCCTGGTTGTTAATTTGTC CGAGGGAAATTTGAATGCTGCTGGTGGAAGAGGGGGTCAGCAGAATAGAAGGGATAGGGAGAAGGAAGGTGAGAGCGCGG AGTTGAGAAATGCTGTTAAAACTAGCTGTGCTGAGGCTCTGTGGAAACTCTCTAAAGGGTGTCTCTTGACCTGCAAGAAG ATTAGCGAGACTAAAGGTTTGCTTTGTCTGGCTAAGATTGTGGAGTCCGAGAGCGGAGATTTGCGGTTCAATTGTCTCAT GGCTGTCATGGAGATTGCTGCCGTGGCGGAGTCCAATGCTGAACTTAGAAGAGTTGCTTTCAAGCCCAACACAACGGCAG CGAAGGCGGTTTTGGATCAGCTCTTGAGGGTGGTTTGTGAGGAGAGCGATTCTGCCTTGCTGGTTCCTGCCATTAAGTCT ATTGGCTCCTTGGCCAGAAACTTCCCAGGAAAGGTTCCTCAAGTTATTGGCCCCTTAGTTGCCCAGCTTGGCAACAGAGA TATAGATGTTGCGAGTGAAGCTGCGATTGCATTGGCAAAGTTTGTGTGCCCGGAAAATTACAACTGCGTTGAGCATTCGA AGGTAATACTTGAGCTTGATGGAATCCCCAAGCTTATGAGTCTGCTGCAGATAAATGATCGGCAGCAAGTGTATGGCCTG AAGTTACTATGTTACCTTGCCTTAAACGTAGGGGATAGTAAGATTCTTGAGGAGGAACGTACCTTGAGTACTCTAGAGAA GCTTGCTCGTCCTGTTCTATCTCAACATCCTGATTTGAAGGAACTGCTTGCAAAGGCCATACACCACCTCACTCTTTATC AGTCTGGGGCTCAGTTGCACAGACAGCCTTTGGGACTATAGTGCCAGTGATTTTGTTCATCATAATAATGATTCTTGTAA GTGTTTCGAATGGCAAAGTAAATGTGTAATGTAATAGGAAAATGATTGAACAATATAACTTTGGATGTGTATAATATAAC TTCACTTTCAGTAGATTTGATAGCACTACCTGTTTTCCTATCTCTGGTGACTTCTTGCTTGCCCTAACTTTTTTTTTTCT CCGGATAAGTAACACAGAATTATTTGATTTCTTCATCATGTTCTGTGTTTGAGTTGCTGTTTACAATATATACATGTATA ATAAGGCCATAGTTACTAGGCTATGCTATTTATGTAGATTAAAATATGATGTATGCATTCATTTCAGGGCAAAGTGAATA AATAAATTAAAGCCTTGAAATTGAATTATGT
CDS sequence (LotjaGi4g1v0229600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGAAACCCTAACCCTAAGCCGGAAGAAGAAGAGAAGCGCCTACAAGAGGAGCTCCTCGGACCGATCCTAGTAGC AGAGCGCGTCATCAAACTAGCGGAGGAAGCAGAGTCATCCAAAACCGTCTGCAGGGAGCTCGCCACCAAGGTCCAAATCC TCTGCGAAAATCTCCGAGCGGTGGTTCGCGCCGTGTCAGCCAACCCCTCTCTCAACGAGAGGCCGATCCGCCGCATGGCC GCCGACGTCTCCAAATGCCTCGACAAGACGCTGTCGCTCGTCCGGAAATGCAGGAAGCAACCCGGCGTGCTCCGGCACGT GTGGTCGATGAGGACCACCGGGGACTTACGAAAAGTCTGGAGTCTTCTAGAGTCTTCCAATGGTGACATGATGTGGCTTC TCAGCATCTTTGAGTCTAAAGGGACTAACCTCTCGCTTCCTCCGATTGCGAGCAATGATCCGATTTTGGCATGGGTGTGG ACATACACGTATACTCTCCAATTGGGTAGCGCCAAGGATCGAGCTGAAGCTGCTACTGGGTTAGGTTCTCTTGCTAGAGA CAATGACCGGAACAAGTTCATCATCATGGAGGAAGGTGGGGTTTTACCTCTTATCAAGCTTCTTAAGGATTCTGCTTACC CTGATGCTCAGGTCGCGGCTGCGAATGCTCTTGTCAATATAGCTTCGAATCAACTCGGTGTGGTTCGGTTCCTGCTTCCC AGCCTTGCTGTCCCTGCCATTGTTCAGGTTCTGTCCGATTCGCCGTTTAGAGTTCGTGTTTCCGTTGCGAGTTTAGTCTC CACCATGGCTGACCAGGACCCCGTTGCTCGCGAGGAGTTTGCGCGGGCAAATGTGACTAGACCTCTGGTGTCGTTGTTGG CGATGGATACTGTCCTTGCCGACCCCATGGCGGCTCGAACCAGCAGCATTCATTCCCTGGTTGTTAATTTGTCCGAGGGA AATTTGAATGCTGCTGGTGGAAGAGGGGGTCAGCAGAATAGAAGGGATAGGGAGAAGGAAGGTGAGAGCGCGGAGTTGAG AAATGCTGTTAAAACTAGCTGTGCTGAGGCTCTGTGGAAACTCTCTAAAGGGTGTCTCTTGACCTGCAAGAAGATTAGCG AGACTAAAGGTTTGCTTTGTCTGGCTAAGATTGTGGAGTCCGAGAGCGGAGATTTGCGGTTCAATTGTCTCATGGCTGTC ATGGAGATTGCTGCCGTGGCGGAGTCCAATGCTGAACTTAGAAGAGTTGCTTTCAAGCCCAACACAACGGCAGCGAAGGC GGTTTTGGATCAGCTCTTGAGGGTGGTTTGTGAGGAGAGCGATTCTGCCTTGCTGGTTCCTGCCATTAAGTCTATTGGCT CCTTGGCCAGAAACTTCCCAGGAAAGGTTCCTCAAGTTATTGGCCCCTTAGTTGCCCAGCTTGGCAACAGAGATATAGAT GTTGCGAGTGAAGCTGCGATTGCATTGGCAAAGTTTGTGTGCCCGGAAAATTACAACTGCGTTGAGCATTCGAAGGTAAT ACTTGAGCTTGATGGAATCCCCAAGCTTATGAGTCTGCTGCAGATAAATGATCGGCAGCAAGTGTATGGCCTGAAGTTAC TATGTTACCTTGCCTTAAACGTAGGGGATAGTAAGATTCTTGAGGAGGAACGTACCTTGAGTACTCTAGAGAAGCTTGCT CGTCCTGTTCTATCTCAACATCCTGATTTGAAGGAACTGCTTGCAAAGGCCATACACCACCTCACTCTTTATCAGTCTGG GGCTCAGTTGCACAGACAGCCTTTGGGACTATAG
Protein sequence (LotjaGi4g1v0229600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGNPNPKPEEEEKRLQEELLGPILVAERVIKLAEEAESSKTVCRELATKVQILCENLRAVVRAVSANPSLNERPIRRMA ADVSKCLDKTLSLVRKCRKQPGVLRHVWSMRTTGDLRKVWSLLESSNGDMMWLLSIFESKGTNLSLPPIASNDPILAWVW TYTYTLQLGSAKDRAEAATGLGSLARDNDRNKFIIMEEGGVLPLIKLLKDSAYPDAQVAAANALVNIASNQLGVVRFLLP SLAVPAIVQVLSDSPFRVRVSVASLVSTMADQDPVAREEFARANVTRPLVSLLAMDTVLADPMAARTSSIHSLVVNLSEG NLNAAGGRGGQQNRRDREKEGESAELRNAVKTSCAEALWKLSKGCLLTCKKISETKGLLCLAKIVESESGDLRFNCLMAV MEIAAVAESNAELRRVAFKPNTTAAKAVLDQLLRVVCEESDSALLVPAIKSIGSLARNFPGKVPQVIGPLVAQLGNRDID VASEAAIALAKFVCPENYNCVEHSKVILELDGIPKLMSLLQINDRQQVYGLKLLCYLALNVGDSKILEEERTLSTLEKLA RPVLSQHPDLKELLAKAIHHLTLYQSGAQLHRQPLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 593 | 584 | 7.9E-281 | – | |
| PANTHER | 10 | 593 | 584 | 7.9E-281 | – | |
| SUPERFAMILY | 171 | 584 | 414 | 2.79E-35 | ||
| SMART | 187 | 229 | 43 | 0.12 | ||
| Pfam | 188 | 229 | 42 | 3.2E-5 | ||
| ProSiteProfiles | 199 | 231 | 33 | 8.907 | ||
| MobiDBLite | 324 | 344 | 21 | - | – | |
| SMART | 500 | 539 | 40 | 23.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0229600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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