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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0230200 |
| Transcript ID | LotjaGi4g1v0230200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oleosin; TAIR: AT3G01570.1 Oleosin family protein; Swiss-Prot: sp|Q9SS98|OLEO5_ARATH Oleosin 5; TrEMBL-Plants: tr|A0A1J7HZJ8|A0A1J7HZJ8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0230200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54045618..54046853) extracted from Lotus japonicus Gifu genome v1.2.
GCATTTGAAATCGAAATAATTAAGAAACCGATAACTAAGACAAACTATAAACTACTCCACCGATCAAGAAAACTCAAAAG GATGATGAGGATGAGGTTCAATTCACGAAGCCATGTAAGACAGACAACAGCATTCACCCCTCGATCAAATAACGATAAAC CTCTTCTGAATTTTGCACCATCAAACGACATCTACCTCTCCCATGCAACCCTTCATCCCCTGTTCCTTAACCAAGTGTTC CTCACCCCTTCCCTACGTGTCATCACTTCCCTTCACCTTAAATTACTCTCATCACCTTCACCTAACCAACCCCATTCAAT TCATACCCTCTTCTTCATTTTATTTTTCTCTCATCTCCTTGCAAATACCACAAGCAAGTAAGACTTAAAAAAGCTTGCAT TCTCCTTCCATGGCAGAGCCTTATCAGCAAGAAGACTACTACTACAACCACACAGGCACCCAATCACGAACAGGGAAGCC AAATCCTACTACTTCTCAGGTTCTAGCACTCGCCACTCTTGTCCCATTCGGAGCTTCTCTCCTCATCCTCGCCGGCCTCA CCCTTGCCGCCACCGTCATCGGCCTCACCATCACCGCCCCGCTCTTCGTCATCTTCAGCCCCATCTTGCTCCCGGCAGCC CTGCTCATCGGTTTAGCCGTCGCAGGGTTTGTAACATCTGGGGCATTCGGGGTCACCTCTCTCTCTTCGTTTGCTTGGCT GGCAAACTACCTCCGCCGCACGCGGTTGCTGGAGCGCCTCAAACCGCCGCTTCAGGCGGCTGCCGAGACCATGGCCCAGA GAGCTGGGGAAGTTGTTGAAAGTGTGGAGAGCAAAGCCCAGGAGATGGCCCAGGCGGCCCAGAGCGAGGCCCGTGACGAT GGAAAAGCAGCCCAAACTGAGAGCAGGGTCAGAAAAACGGGCCTGGACGTCCAGAGTGATTCTCGTGAAGCAGCAAAAGC CTAGAATGCATCCTTGTGACATCTTTTCTTTTCTTGTGTTGCCTTTTTCTAAATTATGTTTCCTTTGTAGAGAAGTATGA AGTGCTTAGTGGGGAAAACAAATCAAATTATAAGGTTTCCTTTCCTTGACTATTGAAGGTTTGAGTGCATTGTACTAAAA ACTGTTTGTAGACTACTTCTACGAATAAATTTTCAAGCCACATGGGTGATTCGAAAAAGTTATCTTCACTTATAAATAAA TTATAACTAGTGTTTTTTATCCGCGCGTTGCACGCG
CDS sequence (LotjaGi4g1v0230200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGCCTTATCAGCAAGAAGACTACTACTACAACCACACAGGCACCCAATCACGAACAGGGAAGCCAAATCCTAC TACTTCTCAGGTTCTAGCACTCGCCACTCTTGTCCCATTCGGAGCTTCTCTCCTCATCCTCGCCGGCCTCACCCTTGCCG CCACCGTCATCGGCCTCACCATCACCGCCCCGCTCTTCGTCATCTTCAGCCCCATCTTGCTCCCGGCAGCCCTGCTCATC GGTTTAGCCGTCGCAGGGTTTGTAACATCTGGGGCATTCGGGGTCACCTCTCTCTCTTCGTTTGCTTGGCTGGCAAACTA CCTCCGCCGCACGCGGTTGCTGGAGCGCCTCAAACCGCCGCTTCAGGCGGCTGCCGAGACCATGGCCCAGAGAGCTGGGG AAGTTGTTGAAAGTGTGGAGAGCAAAGCCCAGGAGATGGCCCAGGCGGCCCAGAGCGAGGCCCGTGACGATGGAAAAGCA GCCCAAACTGAGAGCAGGGTCAGAAAAACGGGCCTGGACGTCCAGAGTGATTCTCGTGAAGCAGCAAAAGCCTAG
Protein sequence (LotjaGi4g1v0230200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEPYQQEDYYYNHTGTQSRTGKPNPTTSQVLALATLVPFGASLLILAGLTLAATVIGLTITAPLFVIFSPILLPAALLI GLAVAGFVTSGAFGVTSLSSFAWLANYLRRTRLLERLKPPLQAAAETMAQRAGEVVESVESKAQEMAQAAQSEARDDGKA AQTESRVRKTGLDVQSDSREAAKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 7 | 157 | 151 | 3.0E-50 | ||
| PANTHER | 7 | 157 | 151 | 3.0E-50 | – | |
| Pfam | 29 | 139 | 111 | 2.6E-35 | ||
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 31 | 53 | 23 | - | – | |
| Phobius | 54 | 64 | 11 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 65 | 85 | 21 | - | – | |
| Phobius | 86 | 90 | 5 | - | – | |
| TMHMM | 91 | 108 | 18 | - | – | |
| Phobius | 91 | 108 | 18 | - | – | |
| Phobius | 109 | 184 | 76 | - | – | |
| MobiDBLite | 136 | 184 | 49 | - | – | |
| MobiDBLite | 157 | 184 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Monolayer-surrounded lipid storage body | A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. The storage body has a droplet of triglyceride surrounded by a monolayer of phospholipids, interacting with the triglycerides and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0230200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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