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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0232100 |
| Transcript ID | LotjaGi4g1v0232100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; TAIR: AT5G63000.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|P81928|140U_DROME RPII140-upstream gene protein; TrEMBL-Plants: tr|I3SES3|I3SES3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0232100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54344230..54348340) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAAATAACTTGGGATGTTAAAAAAGAAAAAAGAAAATCCCTCCATTTAAAATGGTATGAGGAAATCACCACAAAATG AACACATGTCTCATGACATAGTGTTACACTGGGTAAACATGAACAAAACAAACGATGCTCCACAACACAATGCTCTGAGA CTGTCACAGACTAAGATTCCGATTTCCACAGCGGTGCAATCCTACAACTCCGCCGCTATCTTCACCGAATCAATTTAGTC GGAGATCGATTTCCCCTTTCCTTTTGTTTCTCGGCAACCAAACAAGTTCTTTTTCATTTCGCGGAGCTCACTGCACCTCC TACCATGGAAGCCACTGATAACAACACAGAACCCACACATCAATATGTAAGAAAATTTTGTAATCTTTTCAGTTTAGGAG TTAGTTGCATTATTTGATGTACAGATTGCAATATGCAGAGTATTTTAGTAGTGAACCCTATATTTTTTTTTAATCTGAAT GTTGTGCTACTTATCAATGTAATAGCTGCAAATTTCAATGGCATGGTTCAGCTAGCACTCACTTAGTTGGTTGACAAGAA TACAAATTGAATTTCATTTTGAGCATGCATTTCTATGAAATTATCATATAGGCTATATACTTATTAGGGATAGAATGAAT AAAACAACAGTGAAAATAAGAATATCTGGCTTGATAGCATGTCATTATCTGTCAATAGAACAAAATGAATTATGTCTAGT CTGGACTTGCTGTAGTTGAAATTGTTAGTATGACAGTTTTCCATTTTTCTAGGTTTTGAAAGGTCTCACCTTATATGATG TTTCTGTTTAAGTGTGTGCTGAATTTCATCATGCTGAATTCATTTAACTATAAAACTTTTTCTCATACCTTCGTTAATCA GGGTTCTCCGAAATTAGCTGGTTCTGTTAACTGGGGCACAGCAACCGTCATTGGAATATTTGCGGGCATGTTATATGGTG GTAGCAAGGAGGCAGCTGCTTCTGTTGTAAGTTTATTATTGAAAAGATGCTCCAAAACTCTGCTTCATATAGGAACCATA TAATATATTATGTTCAAGTTCAACAGAGAAAAGGTCACTAAAACAAGAGTACAAACAGATTGTTATTTATTTATGTTTAT ACTTTCATAAATGGTTGATTTTAGTCTATAGTTTTAGTTGCATAAGTCAAGTCCTTATAGTTTACAAAATTGATTAAATT TGTTCCTGATGTTAGGCTGCCATCGAATATTTAATCAGGACATGGCTAACTCTGATTCCATTTGTCATTAGACCATACAC TATGGAAATATGTAATTACAAAAAAATGAGGAACTTGCTTCTGATGTGGTTAACTTGCTTCTCACGTGCCCATTTTTTTT GCTAAAAATGAATAATTTATCCTACATGTAAAACCTTTAAATATTAATGACCCACATCATCTAGGTTCCTTGCTGTGTCT ATTCAGAGTTAGCCACCTCAGCATCTTCCGTTATATATTGAATGGCAGACTAATATCATGACTAAATTTGAATAATTTTG ATAGTATGAGGATCTGATTTGTGCAATTTAAACTACAAGGATTAAAATCACCTTTTACGAGAGTATAAGGATCAAAAGTG TTATTATGTATTTATTTTCCCTCAGAATAGAATTGCATATTCCATAGTTCAACACTACGTTTATAATTCCAAAGGTATTT ATTTTCATTGTGGTTCCCGAAAATGAAATTTCCTTGAGAAAGTAGTTGCCTCTTTGGTAGAAGAGGTATACATTAAAACA GAAGAGTAACCTTTACATGACAGAATGAGTAAGAATCTGTTAAAGTTTAATCGTACTAAACATAAGATTTTATGTTGTGT ATCCTGTAAAGAAAAGCAAAGATATGAAACAGACTTTTTGCTCAATCTTTTTTTCTTGTTGAAAATTTTCCATTACAAGT AACATTAGAAGGTAGATGCAAACCGATTAGGTGAATCCCGTAAGGATGTGACAAGATTTTACAATCCCATCAACAGACGA TTGGGCATAAATTTCTGTTTAATCCGTGTGTATTTTTTTAATAACCTAAACTGAAGAAGACATAAATTTCTGTTTAATCC GTGTGTATTGTATCTGGTTATTGATTTCACTGTGTTGTCCTTTTTCTACGTCTAATTTGCCCCTTGTCTGAAGCAAATTC TTACAAAAGGATAATTAAGTCAGAAGTCAGAACTTTTTTAATTACTTTCATTTTTGTTCTATTTTGAGGAAAAAAAAATC TGTAAGAAACAGGGCAAATACTAGTTATCCCCACTGTCCTAATGAAGTTTATTAGTGCTACCAAAATTATGTGTGAACTT TACATCTAAATGCAATAAAGACTTGATTCACTCCTCACAATCATTCGTGGAGATAGAAAAAAGGATTCCCCTTGCAAACA TGTGACTAATATTTATCTTTATTTTGCTGATTATACATTCTTTTTCTTGCTAACTATGTTAACATAAACATTGCTTGTTT GTATTATCATAATTACCCGTGGCAATCATAAGAATTCTTTTTTCCTGTAGAGCAAGGATGCAGAAGTGATGTTGAAACTT GGGAGCACAGAAGACAAACGTGCACAACATCGATTGATGAGAGATGCAATGGAGAAACGATTCCTTCGAGTTACACGGGG CTCAATAGTTGGAGGGGTACGCCTTGGAATGTTTACTGCTGCATTTTTTGGCATACAAAACCTGCTTGAAGAGAAGCGAG GCGTCCATGATGTTTTTAACATTATTGGAGCTGGATCAGCCACTGCTTCAGCTTTTGGCTTAATCTGTAAGAAACCATAA CCGTAGAGTTTATAATGCTACCTACGTTTTCACCTTGGTAGTTTGGTACCTTCATAATGTTACCTCAGCTTCAGTTAACT TTATAGTTTGTCATTTTAATATGTTACCCTTTTTTATCTTTGGAAGGATTCTTTAGGCTATCAGATTGTGATATAAGGTA GAAAATAGTAGATGTCTGTGCTAATATCAATAGGAAGAATTACACAAATAGAAGAACAAAATACTCAGCCCAGAATCAAT GTGATCCTGGAAGCAGAGATTTTATTTCTAAGTGTAGAAAAGTACAAACTGTGGTTCCCGCCCAACCAATTCCTAATAGT GCAAAACTACTAACTGAGGCTATGATTCCTCTATTTATAGCTAACAACTAACAAAGTAAAAGTTACAATTAGTTGTTTCG CTTCTCTGTTTGCGCCTAACATACACTTGTTTAATGCGATGTTTAAGCCTCTATACCTATCAAAGTCACCAAATTCCTCT TATGTTAGTGCCAGGATCACTTCATTGGCGGGCAAGGAATATGGCGCTAGGGTCGGTGCTGGGAGCAGCATTTTGCTTTC CTCTTGGTAAAGTTGAAATGATTTCTTATATAGTTATTTTTTTTTCTAATTACTAACAAGAGAAAGTCCTGTTATGAGAA AAATACAGTTTTTATTCGTAGGGAGGGAACGATCACCACTTATATAAAAATCAACTTTGGCTATTTACTCAAGTTTTGTT TCCATTAATTGTTTGGCAGGTTGGATCCATTTGAAGCTGGTGGAAAAAGCTAATGAAGCGAATCCGGCTATACATCCACA TTTACAACAGAGAGAAGTAAAAGGTGGTGTTAGTGCTGCAATTGAGAGGCTGGAAGGAAATTTAAGTAAATGAAAGCTAT TCTTATTAGTCAGATCTGATACCCCTCACGCCCAGAACCAGCACATCATGTCATTTCAATTGTCATAAGAGAAGTGGGGC AATCTTGTGTTGGAGGACGGTGCAAAACGCTTCAAATGGGAGGTTGATTTACCAAAATGGGACTAATTTACTTTTTATTT TAGTCAAAATAGGTCTACTTTAAATTACCAGTTTGGGGTTGATTCTGAGTAGGTGGTTTTGTTTTTTTTTTTTCTTCACT TTTTACTATGCCATGTGGCAATTTCTTATGCTGCCATGTGGCTTTACGACACAAACTTGTCTTTTATGACTTAAGTGACA TGTAGGAGCTGATTGGCTACGTGATGGCTTTTATGCTGTAATCATGGTCAGGCAACGTTAATTAAAAATAAAATTTGATT GGACACTTATGAATCACCATTTGGCTTGGAC
CDS sequence (LotjaGi4g1v0232100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCACTGATAACAACACAGAACCCACACATCAATATGGTTCTCCGAAATTAGCTGGTTCTGTTAACTGGGGCAC AGCAACCGTCATTGGAATATTTGCGGGCATGTTATATGGTGGTAGCAAGGAGGCAGCTGCTTCTGTTAGCAAGGATGCAG AAGTGATGTTGAAACTTGGGAGCACAGAAGACAAACGTGCACAACATCGATTGATGAGAGATGCAATGGAGAAACGATTC CTTCGAGTTACACGGGGCTCAATAGTTGGAGGGGTACGCCTTGGAATGTTTACTGCTGCATTTTTTGGCATACAAAACCT GCTTGAAGAGAAGCGAGGCGTCCATGATGTTTTTAACATTATTGGAGCTGGATCAGCCACTGCTTCAGCTTTTGGCTTAA TCTTGCCAGGATCACTTCATTGGCGGGCAAGGAATATGGCGCTAGGGTCGGTGCTGGGAGCAGCATTTTGCTTTCCTCTT GGTTGGATCCATTTGAAGCTGGTGGAAAAAGCTAATGAAGCGAATCCGGCTATACATCCACATTTACAACAGAGAGAAGT AAAAGGTGGTGTTAGTGCTGCAATTGAGAGGCTGGAAGGAAATTTAAGTAAATGA
Protein sequence (LotjaGi4g1v0232100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEATDNNTEPTHQYGSPKLAGSVNWGTATVIGIFAGMLYGGSKEAAASVSKDAEVMLKLGSTEDKRAQHRLMRDAMEKRF LRVTRGSIVGGVRLGMFTAAFFGIQNLLEEKRGVHDVFNIIGAGSATASAFGLILPGSLHWRARNMALGSVLGAAFCFPL GWIHLKLVEKANEANPAIHPHLQQREVKGGVSAAIERLEGNLSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 20 | 204 | 185 | 1.3E-64 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 23 | 41 | 19 | - | – | |
| Pfam | 26 | 156 | 131 | 3.9E-9 | – | |
| Phobius | 42 | 85 | 44 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 86 | 105 | 20 | - | – | |
| Phobius | 106 | 116 | 11 | - | – | |
| Phobius | 117 | 135 | 19 | - | – | |
| TMHMM | 117 | 139 | 23 | - | – | |
| Phobius | 136 | 146 | 11 | - | – | |
| TMHMM | 146 | 165 | 20 | - | – | |
| Phobius | 147 | 165 | 19 | - | – | |
| Phobius | 166 | 204 | 39 | - | – | |
| Coils | 188 | 204 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0232100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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