Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0232100 |
| Transcript ID | LotjaGi4g1v0232100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; TAIR: AT5G63000.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|P81928|140U_DROME RPII140-upstream gene protein; TrEMBL-Plants: tr|I3SES3|I3SES3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0232100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54345072..54347902) extracted from Lotus japonicus Gifu genome v1.2.
TTTAACTATAAAACTTTTTCTCATACCTTCGTTAATCAGGGTTCTCCGAAATTAGCTGGTTCTGTTAACTGGGGCACAGC AACCGTCATTGGAATATTTGCGGGCATGTTATATGGTGGTAGCAAGGAGGCAGCTGCTTCTGTTGTAAGTTTATTATTGA AAAGATGCTCCAAAACTCTGCTTCATATAGGAACCATATAATATATTATGTTCAAGTTCAACAGAGAAAAGGTCACTAAA ACAAGAGTACAAACAGATTGTTATTTATTTATGTTTATACTTTCATAAATGGTTGATTTTAGTCTATAGTTTTAGTTGCA TAAGTCAAGTCCTTATAGTTTACAAAATTGATTAAATTTGTTCCTGATGTTAGGCTGCCATCGAATATTTAATCAGGACA TGGCTAACTCTGATTCCATTTGTCATTAGACCATACACTATGGAAATATGTAATTACAAAAAAATGAGGAACTTGCTTCT GATGTGGTTAACTTGCTTCTCACGTGCCCATTTTTTTTGCTAAAAATGAATAATTTATCCTACATGTAAAACCTTTAAAT ATTAATGACCCACATCATCTAGGTTCCTTGCTGTGTCTATTCAGAGTTAGCCACCTCAGCATCTTCCGTTATATATTGAA TGGCAGACTAATATCATGACTAAATTTGAATAATTTTGATAGTATGAGGATCTGATTTGTGCAATTTAAACTACAAGGAT TAAAATCACCTTTTACGAGAGTATAAGGATCAAAAGTGTTATTATGTATTTATTTTCCCTCAGAATAGAATTGCATATTC CATAGTTCAACACTACGTTTATAATTCCAAAGGTATTTATTTTCATTGTGGTTCCCGAAAATGAAATTTCCTTGAGAAAG TAGTTGCCTCTTTGGTAGAAGAGGTATACATTAAAACAGAAGAGTAACCTTTACATGACAGAATGAGTAAGAATCTGTTA AAGTTTAATCGTACTAAACATAAGATTTTATGTTGTGTATCCTGTAAAGAAAAGCAAAGATATGAAACAGACTTTTTGCT CAATCTTTTTTTCTTGTTGAAAATTTTCCATTACAAGTAACATTAGAAGGTAGATGCAAACCGATTAGGTGAATCCCGTA AGGATGTGACAAGATTTTACAATCCCATCAACAGACGATTGGGCATAAATTTCTGTTTAATCCGTGTGTATTTTTTTAAT AACCTAAACTGAAGAAGACATAAATTTCTGTTTAATCCGTGTGTATTGTATCTGGTTATTGATTTCACTGTGTTGTCCTT TTTCTACGTCTAATTTGCCCCTTGTCTGAAGCAAATTCTTACAAAAGGATAATTAAGTCAGAAGTCAGAACTTTTTTAAT TACTTTCATTTTTGTTCTATTTTGAGGAAAAAAAAATCTGTAAGAAACAGGGCAAATACTAGTTATCCCCACTGTCCTAA TGAAGTTTATTAGTGCTACCAAAATTATGTGTGAACTTTACATCTAAATGCAATAAAGACTTGATTCACTCCTCACAATC ATTCGTGGAGATAGAAAAAAGGATTCCCCTTGCAAACATGTGACTAATATTTATCTTTATTTTGCTGATTATACATTCTT TTTCTTGCTAACTATGTTAACATAAACATTGCTTGTTTGTATTATCATAATTACCCGTGGCAATCATAAGAATTCTTTTT TCCTGTAGAGCAAGGATGCAGAAGTGATGTTGAAACTTGGGAGCACAGAAGACAAACGTGCACAACATCGATTGATGAGA GATGCAATGGAGAAACGATTCCTTCGAGTTACACGGGGCTCAATAGTTGGAGGGGTACGCCTTGGAATGTTTACTGCTGC ATTTTTTGGCATACAAAACCTGCTTGAAGAGAAGCGAGGCGTCCATGATGTTTTTAACATTATTGGAGCTGGATCAGCCA CTGCTTCAGCTTTTGGCTTAATCTGTAAGAAACCATAACCGTAGAGTTTATAATGCTACCTACGTTTTCACCTTGGTAGT TTGGTACCTTCATAATGTTACCTCAGCTTCAGTTAACTTTATAGTTTGTCATTTTAATATGTTACCCTTTTTTATCTTTG GAAGGATTCTTTAGGCTATCAGATTGTGATATAAGGTAGAAAATAGTAGATGTCTGTGCTAATATCAATAGGAAGAATTA CACAAATAGAAGAACAAAATACTCAGCCCAGAATCAATGTGATCCTGGAAGCAGAGATTTTATTTCTAAGTGTAGAAAAG TACAAACTGTGGTTCCCGCCCAACCAATTCCTAATAGTGCAAAACTACTAACTGAGGCTATGATTCCTCTATTTATAGCT AACAACTAACAAAGTAAAAGTTACAATTAGTTGTTTCGCTTCTCTGTTTGCGCCTAACATACACTTGTTTAATGCGATGT TTAAGCCTCTATACCTATCAAAGTCACCAAATTCCTCTTATGTTAGTGCCAGGATCACTTCATTGGCGGGCAAGGAATAT GGCGCTAGGGTCGGTGCTGGGAGCAGCATTTTGCTTTCCTCTTGGTAAAGTTGAAATGATTTCTTATATAGTTATTTTTT TTTCTAATTACTAACAAGAGAAAGTCCTGTTATGAGAAAAATACAGTTTTTATTCGTAGGGAGGGAACGATCACCACTTA TATAAAAATCAACTTTGGCTATTTACTCAAGTTTTGTTTCCATTAATTGTTTGGCAGGTTGGATCCATTTGAAGCTGGTG GAAAAAGCTAATGAAGCGAATCCGGCTATACATCCACATTTACAACAGAGAGAAGTAAAAGGTGGTGTTAGTGCTGCAAT TGAGAGGCTGGAAGGAAATTTAAGTAAATGA
CDS sequence (LotjaGi4g1v0232100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATATGGTGGTAGCAAGGAGGCAGCTGCTTCTGTTAGCAAGGATGCAGAAGTGATGTTGAAACTTGGGAGCACAGA AGACAAACGTGCACAACATCGATTGATGAGAGATGCAATGGAGAAACGATTCCTTCGAGTTACACGGGGCTCAATAGTTG GAGGGGTACGCCTTGGAATGTTTACTGCTGCATTTTTTGGCATACAAAACCTGCTTGAAGAGAAGCGAGGCGTCCATGAT GTTTTTAACATTATTGGAGCTGGATCAGCCACTGCTTCAGCTTTTGGCTTAATCTTGCCAGGATCACTTCATTGGCGGGC AAGGAATATGGCGCTAGGGTCGGTGCTGGGAGCAGCATTTTGCTTTCCTCTTGGTTGGATCCATTTGAAGCTGGTGGAAA AAGCTAATGAAGCGAATCCGGCTATACATCCACATTTACAACAGAGAGAAGTAAAAGGTGGTGTTAGTGCTGCAATTGAG AGGCTGGAAGGAAATTTAAGTAAATGA
Protein sequence (LotjaGi4g1v0232100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYGGSKEAAASVSKDAEVMLKLGSTEDKRAQHRLMRDAMEKRFLRVTRGSIVGGVRLGMFTAAFFGIQNLLEEKRGVHD VFNIIGAGSATASAFGLILPGSLHWRARNMALGSVLGAAFCFPLGWIHLKLVEKANEANPAIHPHLQQREVKGGVSAAIE RLEGNLSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 168 | 168 | 5.3E-57 | – | |
| Phobius | 1 | 49 | 49 | - | – | |
| Pfam | 34 | 120 | 87 | 6.7E-8 | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 50 | 69 | 20 | - | – | |
| Phobius | 70 | 80 | 11 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 81 | 99 | 19 | - | – | |
| Phobius | 100 | 110 | 11 | - | – | |
| TMHMM | 110 | 129 | 20 | - | – | |
| Phobius | 111 | 129 | 19 | - | – | |
| Phobius | 130 | 168 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0232100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…