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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0236400 |
Transcript ID | LotjaGi4g1v0236400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribonuclease H; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151R8M6|A0A151R8M6_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi4g1v0236400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55133774..55135014) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTTTATAACACTCTACAATTCTCAGTTTCCTTCACTTCTATTAATCAGAAACAAAGAAATCCATTATGCCTAATAAT ACAGAGCAATGGAGGTGGCTATGGCGCTTGAACATCCCACAAAGGTGCAAGATCTTTCTCTGGCTAGCCTTAAACGACAG GCTCCCTACAAACAACTCTTCAAAATCACCTCCTTACATTACAGATCATGTCTCTTCATCTTGTCCCTTCTGCCACGGAC AAGAGACACTGCTTCACCTCCTGCGTGATTGCACACGGGCCAAAAACACGTGGACTCGCCTCGTTGCTCCACATCACCAA CGTGGCTTCTTCTCTTGCTCAATGTGGGACTGGATGGTGACATATCTTCAGCAACCATGGTCCTCTGTTAACTATGATTG TTCTAACGCCATGGATAAGGATGGTTCTCTGTTTGCTGCTACGGTTTGGTTGTTGTGGAAGGATAGGAAGAGTTGGGTGT GTGATGGACGGAGTGTTTCGTCTGAGAGATTGGTTCAGCGTTTGGGTGCTCTTGCGGAGGATTATGGAAAAGTTGTTCAG GTGGAATGTTGTAAACAACCTGACCCTGCAGTGCGGTTTGTTTCGTGGAGTTTCTATTGGAACCAACCTCCTTCTCAAGG TCAGGTGAATTTGGTTGCGGAAAACTCACAGGTCGTGCTCCCCAAGTTGTAGAAGTGCATGTTTTCTCACTTTCTACTGC ATTACTAGAGTTCTATGCTATGATGCATGGTTACTCCAAAAATCGCATTGTACCCGTACCGGGTACGTACCCGGTACGGG TACGCCAAGGGTACGCCGTGGGTACGTACCTGGTACGTACCCAAGTCCACCCAAAAAAAAAAAAACTGGGGTACGTTTTT GGGTACGTCACGGGTAGGTTTGGGTACGCCCGTGGGTACTCCGGATACTTTTTTTTTTTAAAAAAAAAAAATTGTTCAAA ACTACCTCGTTTTTGTTCACTCATGATGGAGAAGGGAATGATGACACCATTACTGTTTGAGAGAGCTTTGATTTTGTACT GTTGGTTGTTGAACAATCTATCGTTTAATTATTTTGTTGTGTTGAACAATCGTATTGTCTCTTTTGCACTATTTTAATTT GTGTTACTGTCTATGTTGAACAATCTTATGTTATGTCTCTTCAATATTACTCAATCTTATGTTATGTTTCTTCAATCTTA AGATTATCTATGACGGTATGTGTTTGAAGATATATGTTAAG
CDS sequence (LotjaGi4g1v0236400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTAATAATACAGAGCAATGGAGGTGGCTATGGCGCTTGAACATCCCACAAAGGTGCAAGATCTTTCTCTGGCTAGC CTTAAACGACAGGCTCCCTACAAACAACTCTTCAAAATCACCTCCTTACATTACAGATCATGTCTCTTCATCTTGTCCCT TCTGCCACGGACAAGAGACACTGCTTCACCTCCTGCGTGATTGCACACGGGCCAAAAACACGTGGACTCGCCTCGTTGCT CCACATCACCAACGTGGCTTCTTCTCTTGCTCAATGTGGGACTGGATGGTGACATATCTTCAGCAACCATGGTCCTCTGT TAACTATGATTGTTCTAACGCCATGGATAAGGATGGTTCTCTGTTTGCTGCTACGGTTTGGTTGTTGTGGAAGGATAGGA AGAGTTGGGTGTGTGATGGACGGAGTGTTTCGTCTGAGAGATTGGTTCAGCGTTTGGGTGCTCTTGCGGAGGATTATGGA AAAGTTGTTCAGGTGGAATGTTGTAAACAACCTGACCCTGCAGTGCGGTTTGTTTCGTGGAGTTTCTATTGGAACCAACC TCCTTCTCAAGGTCAGGTGAATTTGGTTGCGGAAAACTCACAGGTCGTGCTCCCCAAGTTGTAG
Protein sequence (LotjaGi4g1v0236400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNNTEQWRWLWRLNIPQRCKIFLWLALNDRLPTNNSSKSPPYITDHVSSSCPFCHGQETLLHLLRDCTRAKNTWTRLVA PHHQRGFFSCSMWDWMVTYLQQPWSSVNYDCSNAMDKDGSLFAATVWLLWKDRKSWVCDGRSVSSERLVQRLGALAEDYG KVVQVECCKQPDPAVRFVSWSFYWNQPPSQGQVNLVAENSQVVLPKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Pfam | 4 | 75 | 72 | 2.6E-14 | ||
PANTHER | 6 | 168 | 163 | 1.7E-23 | – | |
PANTHER | 6 | 168 | 163 | 1.7E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0236400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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