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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0238400 |
| Transcript ID | LotjaGi4g1v0238400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIM domain protein; TAIR: AT1G10200.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q94JX5|WLIM1_ARATH LIM domain-containing protein WLIM1; TrEMBL-Plants: tr|I1JZX3|I1JZX3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0238400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55428160..55429865) extracted from Lotus japonicus Gifu genome v1.2.
AAATCTCCAAACTGGCCATAATGAGTACAGGCTGTACAGCTAACATTTGTTGTTATTATTTGACTAAAAAGACCAATGAA CATGATCACTAATTTGTGATACCTTAGCTGAGCTAATTTAAGTTTCTCCCTCCCATACACAATTTGGAAAAACAGGAAGA GAACCACAAAGAGAGAAATCAAGAGTCTTTTATCACTTGAGTTGAAAGATGGCATCATTTGCAGGCACTACCCAGAAATG TAAAGTGTGTGAAAAGAAAGTGTACTGGGTGGAACAGCTCACTGCAGACAACAAGGTGTACCATAAATCTTGCTTCAGAT GTCACCACTGCAAGGGCACCCTCAAGGTGAGAGCAGAACAAACATATATACCAGCACAATTATGCATGCTTTTAGCTTTC TCTGATTTGATGAATGCTTCTTTGTTTGGATTTTCGTTGGGTTAATGCGATAGCACGTACATTTGCCTAATTCAGCAAGT GCGTTACATTGGGTGAATGTATCATTGAAAAATCGTGATCTCCATTTATGAGATTTTCAACTGAAAACTAGACAATTTCT TGCTAACCATTTTGAAGTGACTTATATCAAGACATGTGGAAAATTTCTAAAATGTGCCTTATAAATAGGAATGTATCATT GATATTCTTTATTCATTTATCTATCCCTGCAGCTGAGTAATTATTGTTCCTTTGAGGGTGTTCTGTACTGCAAGCCTCAT TTTCACCAACTCTTGAAGATGACTGGCAGTTTGGACAAAAGTTTTGAAGGTGAATGAATAGCTGCAATGTAGTGGTTAAT TGTTTCTTAGCTTTTAGTTTTCTTCTTTCATCAGATTGTTACATTCATTGCTTCTAGGTGTTGCCAGAATTGCTAGAGTG GAAAGATCTTCCGATCAGGTTTTTATACATTCTTAATACACAAAATATTCCTTCAATTTTCATCTTCAGGATTCTTATTT AGTTCTTGTAAATGTGGGATTGATCTGCAGGTCCAAACCAACAGTAAGATTTCAAAATTGTTTTCTGGAACTCAGGAAAA GTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAGAAGGTATGAATATTTTTAGTGAACTTCATATCTATTAACTTTT TTTATTTGCAAAGCAAATACATGTATATCACTATAACTCTATAAGCATATCAAGTCTAAAAATATTGTAGATCGCAGCAT TGGGATCCAAATGCTTACATTTGCCAATGATATTTTTTCAGGTGGCTGTTGATGGCAAATCTTACCATAAGTCTTGCTTC AAGTGCACCCATGGAGGTTGTGTAATCAGCCCATCAAATTATGTGGCTCATGAACATCGTCTTTATTGTAGACACCACCA TACTCAGCTGTTCAAGCAGAAGGGTAACTTCAGTCAATTTGACAAGCCTGAAATTGTCCAAGAGATCACTGAGGACACAC CATCTGAGTAATGCTATAGAACTTTCACCATACAGTGGCAATACAAGTCCAGATGATGACTCTTTTTAGGCATCAAGTGG CACCATTACAAATCCCCTGTTCAATTCATTTTATAACATATATATGTTACTATGTTTGTGAGGCAAGTTTGTAAAGAGGA CTTTAATTTAATTTGTTGCAATTTATTTTTTATTTGTGGTGGAGAATTGCAAATAATTAAATTTTTGTGAGGCAAGTTTT TAAAGAGTACTTTTTTGTTTCCCAAA
CDS sequence (LotjaGi4g1v0238400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCATTTGCAGGCACTACCCAGAAATGTAAAGTGTGTGAAAAGAAAGTGTACTGGGTGGAACAGCTCACTGCAGA CAACAAGGTGTACCATAAATCTTGCTTCAGATGTCACCACTGCAAGGGCACCCTCAAGCTGAGTAATTATTGTTCCTTTG AGGGTGTTCTGTACTGCAAGCCTCATTTTCACCAACTCTTGAAGATGACTGGCAGTTTGGACAAAAGTTTTGAAGGTGTT GCCAGAATTGCTAGAGTGGAAAGATCTTCCGATCAGGTCCAAACCAACAGTAAGATTTCAAAATTGTTTTCTGGAACTCA GGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAGAAGGTGGCTGTTGATGGCAAATCTTACCATAAGTCTT GCTTCAAGTGCACCCATGGAGGTTGTGTAATCAGCCCATCAAATTATGTGGCTCATGAACATCGTCTTTATTGTAGACAC CACCATACTCAGCTGTTCAAGCAGAAGGGTAACTTCAGTCAATTTGACAAGCCTGAAATTGTCCAAGAGATCACTGAGGA CACACCATCTGAGTAA
Protein sequence (LotjaGi4g1v0238400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFAGTTQKCKVCEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFHQLLKMTGSLDKSFEGV ARIARVERSSDQVQTNSKISKLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKSCFKCTHGGCVISPSNYVAHEHRLYCRH HHTQLFKQKGNFSQFDKPEIVQEITEDTPSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 187 | 187 | 7.7E-125 | – | |
| PANTHER | 1 | 187 | 187 | 7.7E-125 | – | |
| SUPERFAMILY | 3 | 36 | 34 | 1.43E-9 | – | |
| Gene3D | 5 | 75 | 71 | 1.4E-18 | – | |
| ProSiteProfiles | 9 | 69 | 61 | 12.86 | ||
| SMART | 10 | 62 | 53 | 1.7E-10 | ||
| ProSitePatterns | 11 | 45 | 35 | - | ||
| Pfam | 11 | 65 | 55 | 3.9E-10 | ||
| SUPERFAMILY | 37 | 77 | 41 | 6.52E-13 | – | |
| SUPERFAMILY | 102 | 135 | 34 | 1.27E-9 | – | |
| Gene3D | 104 | 174 | 71 | 1.2E-18 | – | |
| ProSiteProfiles | 108 | 168 | 61 | 12.425 | ||
| SMART | 109 | 161 | 53 | 4.3E-13 | ||
| Pfam | 110 | 165 | 56 | 3.6E-11 | ||
| CDD | 110 | 170 | 61 | 8.10318E-38 | – | |
| SUPERFAMILY | 136 | 175 | 40 | 1.57E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0238400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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