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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0238500 |
| Transcript ID | LotjaGi4g1v0238500.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleobase-ascorbate transporter-like protein; TAIR: AT5G62890.1 Xanthine/uracil permease family protein; Swiss-Prot: sp|Q27GI3|NAT6_ARATH Nucleobase-ascorbate transporter 6; TrEMBL-Plants: tr|K7MKR9|K7MKR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0238500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55448456..55452279) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTAAGGCGTCTGCTTTTCTTTTTCTTTCCTAATTTGATGAGAAACTTGGGGGCATTCTGATGCAGCTGAGGCCATA CTTCTTGGTTTTCAACATTATCTTGTGATGCTCGGCACAACTGTGCTAATTCCAACTGCTCTTGTTCCCCAGATGGGAGG TGGCAATGTAAGCATTAACCAATTAAATTCACTCAAAGAAACCATTTTTGATGTGTAATGATTTTTTTCTGAGGGATATC TGATAATCTGATTGAAGCTGCACTTTTCTCCTGCCAAAAATTATTTTTTATTAAAAAAATAGAAGAATTGAAAGTCCATT GTTTTGCAGGATGAGAAGGCCAAAGTTATCCAGACACTACTATTTGTGGCTGGAATCAACACATTACTGCAATCTATGTT TGGAACTCGTTTGCCGGCTGTAATTGGCGGGTCATATACCTATGTTCCAACAACAATCTCAATTATTCTTGCTGGTCGGT TCAGTGATGAGCCAGATCCTATAGAGGTCACAACAGTTCTTGCTATAAATTGTGCATTGTTCATATGCTTGCTCTGTTAA TTTACATTGTAAGAAAATGAGATGCAAGCTAAACAAAGATTATCATATGAATTGTTATTACTTTCAATCCAGCCATTGTA TTTTTAATTGTCATCAGAAAAACTAACAACCATGCTTTCAATTGCATGGATTTACCAATGAGGGTTCGGTTAATTGGTAG GATAGAACTATGTCAACGCAGAAGTCTTGGGTTGAATTCCTAGTTTCCTTGTAGCATGCCTTGACCTAATGGCCTTGGAA TGGGGCAATTTAAGAGGGGAGGGGGAAATTGAATTCAAGAAGCAGAATATGACTTAGATTCTGGTTACTTGATGGAATTG ATTAGTTGCTTTTTTTTGGCGTACATGAACTGTTTGATCACTTTCTTCTCCTTCTTTTTGGCTTTGTTTTTTCCCTTGTA ATCAGAAATTCAAGAGGATAATGCGGGCAACCCAAGGTGCTCTTATTGTTGCTTCAACCCTTCAAATAGTACTGGGCTTT AGTGGTCTGTGGCGCAATGTTGCAAGGTTGGTCTCAAGTTCTTAGTAAGTTGTTGTGTTGTACTTCACATGTCTGTATGT ATGGCATGAAAATGTCTAAGCAAAAGTTTAAACTTTATATGAATCTCTTTGCCACATATGCTCGTTGTCAGTTGTTACTC CAATCTGAAGTGATGTTTAGAGTTCATCTAATGCACTTGAGTGATTTATGCAATGGAGTTTGTATTTGACTATAATTCCA GAATTTGAAAAGGTTGAGTATAAATTTTCCCAAGTGACCTAAGTTCAACTTCTTTCTTCAGGTTCTTAAGTCCACTTTCA GTGGTTCCTTTGGTATCTCTTGTTGGTTTTGGACTGTACGAGTTAGGCTTTCCTGGGGTAAGCCTCATGTTACAAATTTA AGTTGCTCGTGTTCAAAGTTAATTGATAAAAATAATTCATTATTGATGCCTGGCTTGGGTGCAGGTTGCTAAATGTGTAG AGATAGGACTGCCGGAGCTTATAATTCTAGTATTTGTTTCACAGGTAGATTTCTTAAGCTGTCACAAACCCAGACTGATG ATTTCTGTGGAAGTGAGTTTGTTATTCACAGTTAATGGTTGTTCTGCAGTACGTACCCCATGCACTACATTCAGGAAAGC ATGTCTTTGACCGTTTTGCTGTTCTAATTACAATTGCGATTGTCTGGTTATATGCTTATATCCTCACTGTTGGGGGTGCC TATAACCATGCTGCACGTAAAACACAGACAACCTGCCGCACTGATCGTGCTGGCTTAATCGATGCTGCCCCATGGTTAGT TGGAAATTCATTGACTGTTTACTCTCAAATGGTTTTTTTATTACAAATACCTGATATCCTTAAATAGTGGCATGCTATCT CACTATAACATTTTATGATTTGAGTTTTTTTATCATTTTATGTCTTAATAATTGATTCGTAAAATTTAAAATTTATAGAG GGGTATTATGGGGATTTTTTTCTTGTGAATTCCATTGGAGTATACTGTTTTTGTGAGTGATGCTTTGTGGACATGTCACA TGTGGTTAATGGAGAGATTTATCTTAGTTGATTCCATCAAATTTCACATTTGAGTTTCAAATGTGAAGAACCTCTTGATG CTTTGACTTTGATTTGTCCATCACCCATTGGGTTACTTTTTTTTCCTTCCTCTATTCTGTTGTCAAGATAGTAGTTTCTT ATTCAGTGAGATTTTTGGTTTGCAGGATACGAGTTCCGTATCCATTCCAATGGGGAGCACCTTCATTTGATGCAGGTGAG GCCTTTGCCATGATGATGGCATCCTTTGTTGCTCTTGTAGAGGTAATTTCTTTCTTTAGATCTTCTCTATTTCTTTTTAA GTTTGAATGAGAACTCTTTCCTGCAATTGATATGTAATTATACTGAAATTCAGCCTGTCGCATAATAATGTTGCTATGGC CTTTATACTTGTTCATGAACTGAGAAGTAGTGTGATCTGCAGTTTCTCATTTGTATTTTCATTTAGTAGTACTACTTCAC TAGATTTAAGTTATAAACTCATGTTTTATTTTTTACAAGCAGTCCAGTGGAGCTTTTACTGCTGTTTACCGATTTGCAAG TGCAACACCATTACCCCCATCTATTCTTAGTCGGGGTATTGGTTGGCAGGTACAATAATAGCTAGTACTTTTAAATTTGC ATGTCTTTGATTGAAATTTATTGAATTTATAAATAATAGTGGTTTAAAGCCAAAATCGATGATACTAATGGCTGCGCATT GTCTCGTTCTTCAGGGAGTTGGCATACTGTTATCAGGATTGTTTGGAACCGGCAATGGATCCTCTGTATCTGTGTAAGAC TGAAATCATTCTGTTTCTATACTCTGCTTCTATTAAGAGGAAACAACTTCCATGTTGATAAAAGGTATTTGGTTGGTTTC CTTGTAGAGAGAATGCTGGTCTTTTGGCTTTGACTCGTGTTGGCAGTCGAAGAGTGGTGCAAATAGCTGCTGGGTTTATG ATCTTCTTTTCAATTCTAGGTGAGTTGAAGTATGGAGCTAAGTTCAATGTTTGTAATTTGAATATCTACTTTGCCTTAAC ATTTCTTCTGTTCAACACCACCGATTTTTTCTTCATTGTGTAGGGAAATTCGGAGCAGTTTTTGCCTCCATTCCACCTCC CATGATTGCTGCACTGTATTGCTTGTTTTTTGGTTATGTTGGTATGTCTGGTTTAAGTTATATTCATGAAAACATATTCA GACTTTTGATTAAATTTGATATTTACAATACACAGCATGTAATATTTTGCTTTCATTCATCATTAGGAGCTGGAGGTCTA AGTTTTCTTCAATTCTGCAACCTCAATAGTTTCAGAACAAAGTTCGTTTTAGGTTTCTCTATCTTCCTGGGCTTGTCTAT TCCACAGTACTTCAACGAGTACACAGCAATTAATGGTTATGGTCCAGTTCACACAGGAGCAAGATGGGTATGGAACTATA AATATGATATATAGAACCTTGGAGTTGTTCTTAGCTTTTGTGAGGAGTCCACTTACATTACACTGCATTTTTATGTGTGT TGCAGTTCAATGATATAGTCAATGTACCATTCCAATCAAAAGCATTTGTTGCTGGGGTTGTGGCGTATTTCTTGGATAAC ACACTGCATAAGAAGGAATCTGCTATTAGGAAAGACAGAGGAAAACATTGGTGGGACAAGTACCGGTCCTTCAAGACTGA CACAAGAAGTGAGGAGTTCTATTCACTGCCTTTCAATCTGAACAAGTACTTCCCATCTGTGTAA
CDS sequence (LotjaGi4g1v0238500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCGGCACAACTGTGCTAATTCCAACTGCTCTTGTTCCCCAGATGGGAGGTGGCAATGATGAGAAGGCCAAAGTTAT CCAGACACTACTATTTGTGGCTGGAATCAACACATTACTGCAATCTATGTTTGGAACTCGTTTGCCGGCTGTAATTGGCG GGTCATATACCTATGTTCCAACAACAATCTCAATTATTCTTGCTGGTCGGTTCAGTGATGAGCCAGATCCTATAGAGAAA TTCAAGAGGATAATGCGGGCAACCCAAGGTGCTCTTATTGTTGCTTCAACCCTTCAAATAGTACTGGGCTTTAGTGGTCT GTGGCGCAATGTTGCAAGGTTCTTAAGTCCACTTTCAGTGGTTCCTTTGGTATCTCTTGTTGGTTTTGGACTGTACGAGT TAGGCTTTCCTGGGGTTGCTAAATGTGTAGAGATAGGACTGCCGGAGCTTATAATTCTAGTATTTGTTTCACAGTACGTA CCCCATGCACTACATTCAGGAAAGCATGTCTTTGACCGTTTTGCTGTTCTAATTACAATTGCGATTGTCTGGTTATATGC TTATATCCTCACTGTTGGGGGTGCCTATAACCATGCTGCACGTAAAACACAGACAACCTGCCGCACTGATCGTGCTGGCT TAATCGATGCTGCCCCATGGATACGAGTTCCGTATCCATTCCAATGGGGAGCACCTTCATTTGATGCAGGTGAGGCCTTT GCCATGATGATGGCATCCTTTGTTGCTCTTGTAGAGTCCAGTGGAGCTTTTACTGCTGTTTACCGATTTGCAAGTGCAAC ACCATTACCCCCATCTATTCTTAGTCGGGGTATTGGTTGGCAGGGAGTTGGCATACTGTTATCAGGATTGTTTGGAACCG GCAATGGATCCTCTGTATCTGTAGAGAATGCTGGTCTTTTGGCTTTGACTCGTGTTGGCAGTCGAAGAGTGGTGCAAATA GCTGCTGGGTTTATGATCTTCTTTTCAATTCTAGGGAAATTCGGAGCAGTTTTTGCCTCCATTCCACCTCCCATGATTGC TGCACTGTATTGCTTGTTTTTTGGTTATGTTGGAGCTGGAGGTCTAAGTTTTCTTCAATTCTGCAACCTCAATAGTTTCA GAACAAAGTTCGTTTTAGGTTTCTCTATCTTCCTGGGCTTGTCTATTCCACAGTACTTCAACGAGTACACAGCAATTAAT GGTTATGGTCCAGTTCACACAGGAGCAAGATGGTTCAATGATATAGTCAATGTACCATTCCAATCAAAAGCATTTGTTGC TGGGGTTGTGGCGTATTTCTTGGATAACACACTGCATAAGAAGGAATCTGCTATTAGGAAAGACAGAGGAAAACATTGGT GGGACAAGTACCGGTCCTTCAAGACTGACACAAGAAGTGAGGAGTTCTATTCACTGCCTTTCAATCTGAACAAGTACTTC CCATCTGTGTAA
Protein sequence (LotjaGi4g1v0238500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGTTVLIPTALVPQMGGGNDEKAKVIQTLLFVAGINTLLQSMFGTRLPAVIGGSYTYVPTTISIILAGRFSDEPDPIEK FKRIMRATQGALIVASTLQIVLGFSGLWRNVARFLSPLSVVPLVSLVGFGLYELGFPGVAKCVEIGLPELIILVFVSQYV PHALHSGKHVFDRFAVLITIAIVWLYAYILTVGGAYNHAARKTQTTCRTDRAGLIDAAPWIRVPYPFQWGAPSFDAGEAF AMMMASFVALVESSGAFTAVYRFASATPLPPSILSRGIGWQGVGILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQI AAGFMIFFSILGKFGAVFASIPPPMIAALYCLFFGYVGAGGLSFLQFCNLNSFRTKFVLGFSIFLGLSIPQYFNEYTAIN GYGPVHTGARWFNDIVNVPFQSKAFVAGVVAYFLDNTLHKKESAIRKDRGKHWWDKYRSFKTDTRSEEFYSLPFNLNKYF PSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 393 | 393 | 8.0E-65 | ||
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 483 | 483 | 2.2E-291 | – | |
| PANTHER | 1 | 483 | 483 | 2.2E-291 | – | |
| Phobius | 26 | 44 | 19 | - | – | |
| Phobius | 45 | 49 | 5 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 50 | 69 | 20 | - | – | |
| Phobius | 70 | 89 | 20 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 90 | 108 | 19 | - | – | |
| Phobius | 109 | 113 | 5 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| Phobius | 114 | 135 | 22 | - | – | |
| Phobius | 136 | 141 | 6 | - | – | |
| Phobius | 142 | 162 | 21 | - | – | |
| Phobius | 163 | 173 | 11 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 174 | 196 | 23 | - | – | |
| Phobius | 197 | 316 | 120 | - | – | |
| Phobius | 317 | 339 | 23 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| Phobius | 340 | 344 | 5 | - | – | |
| Phobius | 345 | 365 | 21 | - | – | |
| TMHMM | 346 | 365 | 20 | - | – | |
| Phobius | 366 | 376 | 11 | - | – | |
| TMHMM | 377 | 399 | 23 | - | – | |
| Phobius | 377 | 393 | 17 | - | – | |
| Phobius | 394 | 483 | 90 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0238500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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