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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0239500 |
| Transcript ID | LotjaGi4g1v0239500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT3G55780.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q06915|EA6_ARATH Probable glucan endo-1,3-beta-glucosidase A6; TrEMBL-Plants: tr|G7KBV7|G7KBV7_MEDTR Glycoside hydrolase family 17 protein; Found in the gene: LotjaGi4g1v0239500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55608034..55610459) extracted from Lotus japonicus Gifu genome v1.2.
CACTACTCTCTGTGTCAATTACAAAAGCAAAACAAAGTTAGACGTAGAATCATCATCGACCTGACTCTGAATCAATCAAT ACATCAGCTACAGAATCAGAGACCAAGTCTATCTATTAATAAAATTCTGCCTTTCAAGGAGGAACAAACGATTCACCTCA CTTCATCGTGTTCATTTTTCATTCTATTTATGATCACATTGTAATTAATGATTTAAAGTTGTATATGCTCCGTTGAGGAA GATAGCGTGGGCTTTTTGGGCACATAATCAGCCAAGCAAATTAGGTAGCAAACCTTGATGTTGGGCACATTAACTATTCA TGTAGCACTAGCTAGAAACTTTTAATTTTCAAATTTTTCCTGAAATAAAGAAGTTATCAAATATATATCTCTTTGATCAG AACTAGTCTTAAGAGGGTCACGGACAACCTGTTTTTCACACATACAACACTTCCTAACAAACTAATTCACTCCCCCCTCA ATCCAAACGTCACACACATTCCACGCTTCCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCTTCCACGAAGAAGCAATGCAG CAGCACCATCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCCAACCACCGCCTCTCTCGGCGTCACCTACTCCAACAACCG CCAACAACCAGACCGCATCGCCGCCGCAATGCAAACCCTCAAACTCACCTCCATCCGCCTCAAAGAACCCGACCCAGCCA TCATGCGCTCCCTTCTCTACTCCAACATCTCCATCTTCCTCACCGTCCCCAACCACATGGTCACTTCCATGGCCAATAAC CTCTCCACCGCACGCGCCTGGATCTACACCCACGTCGTCCCGTACTACCCACGCGCCAAGATCACCACCATCTCCGTTGG CAACGCCTTCATCGATGTCTACCCTCAGGCCGCCAATAACCTCCTCCTGGCTATCTCCAATATCCAGGTCTCCCTCCGTG ACCTCGGCATCCGCAAGATCGCCGTCTCCACCTCGTTCTCCTTCGACACCGTCGTTACCTCCCCGTTCCCGCCGTCCTCT GCCACTTTCCAAGATCCCGCCGGCGTCAACCTCATGGGCTCGCTCCTGGAATTCTTGAGCGACAACAATTTCTCGTTCTT GATCAACCTCTACCCTTACAACCTCTACCGCCTCCACCCGGAGATCCCCCTCGGTCTCGCGCTGTTTCAAGAAAACTCGT TCAACTTCCACGATGACGTCACCACCAGGTCTCGCTACTGGAACCTCTTCGACATGATGGTCGACGCCGTCGCCTCTGCC ATGGCCGAGGCTGGGTACGAAACAATCCCAATCGTTGTCACTGAGACAGGGTGGCCGAGCTCCGACGCCGCCGACGAGTT CAACGCGAATTTGGGGTACGCCGAGACCTATTTGAGGGGTTTGGTGAATCATCTGAGTTCAGGAACCGGAACGCCTCTGT TGAAAGATGGGGTTCAACAGGTTTATGTGTACGAGCTTTTTGACAGGAAAGGAACAACAACGGGTCGCGATTGGGGGATT CTGTACCCTAATGGCACAGCTAAGTACCACGTTGATTTCTCTGCTGTTTCATCACGTTCTTCCATTACTGTGGCTTTGGT GATTTTCTGGCTTCTGGTTCAGTTGGTCTACTGAGTAGTGACTCTGTTCTCTCGTTTGGCATCTTGTTAGGAACGGGGTA TTTTTTTTTAATTAGGTTTTGAATTAATGTGATTTTCAGGAAAATTGTGTTTGAGTAATATGATTTATGTTTTGATGATT TATAACAAACACGATTTAAAAAAATGAGTATTGTTTGGATTATTTAACGTTTAGGACTATAATTTAAAGGGGGCTGTTAA CTTACACCCACTTAAAATTTAGAAGGAGTAAGTTAACAAGCTACACCATTTTCTGATTGACTAAAAAACCAGACGGCGTC TTCCGTGAGTCATTTTTCTAAATGACTCACGGTGATACACTAAAAAAATTGTGTGTATAGACCATAATGCCCTCATCCTC AAATATCTCATTTCTTCTCCTACGATTTCACCACCACCGTTTCCTCCGTTTTCTTCGGTTCAACCACCATTTATGGCTCC TCTCCAGCTTCACATGCTACCTCCCCTCTCTCTCCCCATGGACCACCAGATCTGTTATCTGTCTCCGGCCACCGTAACTG TCTCTACCAGACAACCTTCGACGATGTCGTTGAAGAATCCTTCAATTTATTCTGGCAGTAATCACCAACCCTCCTTCACC TTCTACTAACAATAATCCCTAACCCCCCTGACCTTCAATTTCTTCCACCAGAAATCCCTAACCTCTTTCACCTTCAATTT CTTCCGCCAGAAATCTCTAACCCCCTTTGACCTTCAATTTCTTCTACCAGTAATATGAATTCGTATATGGCTAGGTTGAT TTTATGATTGGTTAGTTCAGTTGTCG
CDS sequence (LotjaGi4g1v0239500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCAGCACCATCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCCAACCACCGCCTCTCTCGGCGTCACCTACTCCAA CAACCGCCAACAACCAGACCGCATCGCCGCCGCAATGCAAACCCTCAAACTCACCTCCATCCGCCTCAAAGAACCCGACC CAGCCATCATGCGCTCCCTTCTCTACTCCAACATCTCCATCTTCCTCACCGTCCCCAACCACATGGTCACTTCCATGGCC AATAACCTCTCCACCGCACGCGCCTGGATCTACACCCACGTCGTCCCGTACTACCCACGCGCCAAGATCACCACCATCTC CGTTGGCAACGCCTTCATCGATGTCTACCCTCAGGCCGCCAATAACCTCCTCCTGGCTATCTCCAATATCCAGGTCTCCC TCCGTGACCTCGGCATCCGCAAGATCGCCGTCTCCACCTCGTTCTCCTTCGACACCGTCGTTACCTCCCCGTTCCCGCCG TCCTCTGCCACTTTCCAAGATCCCGCCGGCGTCAACCTCATGGGCTCGCTCCTGGAATTCTTGAGCGACAACAATTTCTC GTTCTTGATCAACCTCTACCCTTACAACCTCTACCGCCTCCACCCGGAGATCCCCCTCGGTCTCGCGCTGTTTCAAGAAA ACTCGTTCAACTTCCACGATGACGTCACCACCAGGTCTCGCTACTGGAACCTCTTCGACATGATGGTCGACGCCGTCGCC TCTGCCATGGCCGAGGCTGGGTACGAAACAATCCCAATCGTTGTCACTGAGACAGGGTGGCCGAGCTCCGACGCCGCCGA CGAGTTCAACGCGAATTTGGGGTACGCCGAGACCTATTTGAGGGGTTTGGTGAATCATCTGAGTTCAGGAACCGGAACGC CTCTGTTGAAAGATGGGGTTCAACAGGTTTATGTGTACGAGCTTTTTGACAGGAAAGGAACAACAACGGGTCGCGATTGG GGGATTCTGTACCCTAATGGCACAGCTAAGTACCACGTTGATTTCTCTGCTGTTTCATCACGTTCTTCCATTACTGTGGC TTTGGTGATTTTCTGGCTTCTGGTTCAGTTGGTCTACTGA
Protein sequence (LotjaGi4g1v0239500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQHHLSLLLLLLLLPTTASLGVTYSNNRQQPDRIAAAMQTLKLTSIRLKEPDPAIMRSLLYSNISIFLTVPNHMVTSMA NNLSTARAWIYTHVVPYYPRAKITTISVGNAFIDVYPQAANNLLLAISNIQVSLRDLGIRKIAVSTSFSFDTVVTSPFPP SSATFQDPAGVNLMGSLLEFLSDNNFSFLINLYPYNLYRLHPEIPLGLALFQENSFNFHDDVTTRSRYWNLFDMMVDAVA SAMAEAGYETIPIVVTETGWPSSDAADEFNANLGYAETYLRGLVNHLSSGTGTPLLKDGVQQVYVYELFDRKGTTTGRDW GILYPNGTAKYHVDFSAVSSRSSITVALVIFWLLVQLVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 5 | 344 | 340 | 1.6E-143 | – | |
| PANTHER | 5 | 344 | 340 | 1.6E-143 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Gene3D | 19 | 343 | 325 | 1.3E-88 | – | |
| Phobius | 23 | 359 | 337 | - | – | |
| SUPERFAMILY | 25 | 335 | 311 | 6.16E-56 | ||
| Pfam | 26 | 335 | 310 | 1.7E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0239500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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