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LotjaGi4g1v0246400.2

Overview

Field	Value
Gene ID	LotjaGi4g1v0246400
Transcript ID	LotjaGi4g1v0246400.2
Related isoforms 2	LotjaGi4g1v0246400.1 LotjaGi4g1v0246400.3
Lotus japonicus genome version	Gifu v1.2
Description	Nitrate transporter 1.1; TAIR: AT5G62730.1 Major facilitator superfamily protein; Swiss-Prot: sp\|Q9FM20\|PTR54_ARATH Protein NRT1/ PTR FAMILY 4.7; TrEMBL-Plants: tr\|G7JPV6\|G7JPV6_MEDTR Peptide/nitrate transporter; Found in the gene: LotjaGi4g1v0246400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:59800895..59801599) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTAACATTTTACTTCATAATTTCTAGTGTAATGCTACTTTAATGTGTTTGTTTTAATTCCTCAAATAAAACTGTTTT AGGAAGAAGGACAGGTGCAAGTTTGGGAAGGCTATGTAGATTGGAGGAACAGACCAGCCAAAAAAGGACATCATGGTGGC ATGCTTGCTGCTTCCTTTGTTTTGGGTTAGTACAACCTTAGACTCTGACCACATTATGCTCTTAATGTTTCTCTGATTTC CAAACCACAATGTTATATATGTTTCTGTAAACCATTTTTTCTACAAAATTACTAGATATTAAGTATTGATGTGTTAACAT GTTTCTAATTTTCTAACTACAGCTGTGGAGGTATTAGAGAACCTAGCATATCTTGCTAATGCAAGCAACCTTGTTTTGTA CCTGACCAAGTTTATGCACTTTTCACCATCCACCTCTTCCAACATTGTCACCAATTTCATGGGAACAGCTTTCCTCCTTG CTATTCTTGGTGGGTTTCTGGCTGATGCATTTTTCACCACTTATTCCATCTATCTCATAAGTGCTGCAATAGAATTCATG GTAACTTCTTTTCTTACTTAAGGTTTCTATAATTTTCCCTCAAAGTGTTTAAGCTGCTATATTAACTTTGCAGGAAACAG CTTCAAGACTTCCAAATTAACTGGAATATAATGTATAAGCTTAAATATCACGCACAAGTCAATGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0246400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAAGGACAGGTGCAAGTTTGGGAAGGCTATGTAGATTGGAGGAACAGACCAGCCAAAAAAGGACATCATGGTGG CATGCTTGCTGCTTCCTTTGTTTTGGCTGTGGAGGTATTAGAGAACCTAGCATATCTTGCTAATGCAAGCAACCTTGTTT TGTACCTGACCAAGTTTATGCACTTTTCACCATCCACCTCTTCCAACATTGTCACCAATTTCATGGGAACAGCTTTCCTC CTTGCTATTCTTGGTGGGTTTCTGGCTGATGCATTTTTCACCACTTATTCCATCTATCTCATAAGTGCTGCAATAGAATT CATGGAAACAGCTTCAAGACTTCCAAATTAA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0246400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEGQVQVWEGYVDWRNRPAKKGHHGGMLAASFVLAVEVLENLAYLANASNLVLYLTKFMHFSPSTSSNIVTNFMGTAFL LAILGGFLADAFFTTYSIYLISAAIEFMETASRLPN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:1.20.1250.20 View details on G3DSA:1.20.1250.20 Search for proteins/transripts with this domain View external data on G3DSA:1.20.1250.20	1	112	112	2.8E-29	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	25	25	-	–
PANTHER	PTHR11654 View details on PTHR11654 Search for proteins/transripts with this domain View external data on PTHR11654	7	108	102	3.5E-52	IPR000109 Show description in modal box View details on IPR000109 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR11654:SF184 View details on PTHR11654:SF184 Search for proteins/transripts with this domain View external data on PTHR11654:SF184	7	108	102	3.5E-52	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	26	50	25	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	27	49	23	-	–
CDD	cd17414 View details on cd17414 Search for proteins/transripts with this domain View external data on cd17414	28	107	80	2.07463E-36	–
SUPERFAMILY	SSF103473 View details on SSF103473 Search for proteins/transripts with this domain View external data on SSF103473	38	101	64	1.31E-5	IPR036259 Show description in modal box View details on IPR036259 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	51	69	19	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	70	92	23	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	70	93	24	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	94	116	23	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of View details of GO:0005575
GO:0022857 View details of GO:0022857 AmiGO InterPro QuickGO	Molecular function	Transmembrane transporter activity	Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.	Subterm of View details of GO:0005215
GO:0055085 View details of GO:0055085 AmiGO InterPro QuickGO	Biological process	Transmembrane transport	The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.	Subterm of View details of GO:0006810

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0246400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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