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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0246500 |
| Transcript ID | LotjaGi4g1v0246500.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hypersensitive-induced response protein 1; TAIR: AT5G62740.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1; TrEMBL-Plants: tr|A0A0D2LVS1|A0A0D2LVS1_GOSRA Uncharacterized protein; Found in the gene: LotjaGi4g1v0246500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59807405..59808897) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAATCTGCTATGTTGTGTGCAAATTGAACAATCAACGGTGGCTATAAAAGAAAAATTTGGGAGATTTGAAGAGGT TCTTGAGCCGGGATTCCATTGCGTGCCAATGTTCCTTGGAGATAGACTGGCTGGTCATCTCTCTCTTCGCCTACAACAAT TGGATATCCAATGTGAGACCAAGACAAAGGTTTGTTACTTGTAGCACCTCAGTCATATCCAAACCTTCATGTCATTTCAT AGTTATCAAGCACCATGAATTCTTGTTGCCTTGGACATTTTTTCATTTTTATCTATGTATAAGATGATACTCTTTTTGTT TGCTTTTTTCCCCACTGAATTAAAGTTGATTGGTTTGAAGGTTTATTTGCTTACAGGATAATGTCTTTGTTAATGTTGTT GCCTCTATTCAATATCGCGCCCTGGCGGACAAGGCTAGTGATGCTTTTTACAAACTTAGCAATACAAGGACCCAAATTCA GGCCTATGTTTTTGATGGTATAAATCACAACACTGCTTAACAATACAGAACCTTGAAATAAGTGGGGTTTAACCATAACT TATCAGATAAGGTGAAATTTCTCTTATCATTGCAGTAATTCGAGCATATGTTCCAAAACTCAACTTGGATGATGCTTTTG AGCAGAAAAATAAAATTGCCAAAGCTGTGGAAGAAGAACTTGAGAAGGTTTCTTTCTTTTTTTGAGAAACAATATTTATT GATAAGGTTAACTTTGATTCATGTTAACATGATTAGATGCTTCATTGTCTTAACAGGCTATGTCAGGTTACGGATATGAA ATCGTTCAAACACTGATTATTGATATAGAGCCAGATGTTCATGTGAAGCGGGCTATGAATGAAATCAATGCTGGTATGTC CTTTTTCAAATGATGTTAAATATGTACTAAGATATTGTATCATGAAGTGTAACTTTTGACTCAAATGATTCTTTGTTAAT AGCTTACCCATCTGATTCAATATTCAACCTGTTTGAATACAAACCAAAGAGCACTATTTGGAGCTTATCTAGTATTTTTT TTCTAGTAGATAACCTCCAATAAGTTCGTATCCAAACAGACTATTGTATGACTTATGATTGCCTGATTTTCTTCCAATGT TTTCTGTCCTTGTTCAGCTGCAAGATTGAGGTTGGCAGCTACTGAGAAGGCAGAGGCAGAGAAGATTTTGCAAATCAAGC GAGCCGAGGGTGAGGCCGAGGCTAAATATCTTTCTGGTCTCGGCATTGCGCGCCAACGCCAAGCAATTGTTAATGGCTTG AGAGACAGTGTGCTTGGATTCGCAGTGAATGTACCGGGGACAAGTGCAAAAGATGTCATGGACATGGTCCTTGTCACTCA GTATTTTGACACAATGAAAGAGATTGGTGCTGCCTCCAAGTCCTCTGCTGTGTTTATTCCTCATGGACCCGGTGCTGTTC GCGATGTAGCTAGTCAAATCCGCAATGGACTTCTTCAGGCTTCTCATCAGTAG
CDS sequence (LotjaGi4g1v0246500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGTTACGGATATGAAATCGTTCAAACACTGATTATTGATATAGAGCCAGATGTTCATGTGAAGCGGGCTATGAA TGAAATCAATGCTGCTGCAAGATTGAGGTTGGCAGCTACTGAGAAGGCAGAGGCAGAGAAGATTTTGCAAATCAAGCGAG CCGAGGGTGAGGCCGAGGCTAAATATCTTTCTGGTCTCGGCATTGCGCGCCAACGCCAAGCAATTGTTAATGGCTTGAGA GACAGTGTGCTTGGATTCGCAGTGAATGTACCGGGGACAAGTGCAAAAGATGTCATGGACATGGTCCTTGTCACTCAGTA TTTTGACACAATGAAAGAGATTGGTGCTGCCTCCAAGTCCTCTGCTGTGTTTATTCCTCATGGACCCGGTGCTGTTCGCG ATGTAGCTAGTCAAATCCGCAATGGACTTCTTCAGGCTTCTCATCAGTAG
Protein sequence (LotjaGi4g1v0246500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGYGYEIVQTLIIDIEPDVHVKRAMNEINAAARLRLAATEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVNGLR DSVLGFAVNVPGTSAKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVASQIRNGLLQASHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 148 | 148 | 2.8E-94 | – | |
| PANTHER | 1 | 148 | 148 | 2.8E-94 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0246500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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