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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0248600 |
| Transcript ID | LotjaGi4g1v0248600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Activating signal cointegrator 1; TAIR: AT3G47610.1 transcription regulator/ zinc ion binding protein; Swiss-Prot: sp|Q15650|TRIP4_HUMAN Activating signal cointegrator 1; TrEMBL-Plants: tr|V7CDE8|V7CDE8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0248600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60131402..60134290) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGCTAGATTTGCCACCCCAACCATTAGATTTCACACCCCTAATTTTCGGATTTTCAAGTTCCGAATTATTTCGGAAT CTTAGATTCCGAAATTAATTCGTGATTTTTAGTTCAAAATACATCTAACACCACACTTTTGAGTAAAAAACCACACTTTT GAGTAAAAAAGTGCTTCGGAAACCTTATTTCCGAAATATTTCGGAAACTGAGTTTCCGTAAGTGGGGTGACATTTCTAAT GGTTGGGGTGCCAAATCTAATGATCCGTTACGCGCTAGGATCGTGATTGGTGAGTTTTGTTCTGGTTTTGAGGAGAGAGA GTAGAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAATCGGCGGGGGAGTGGTTGGAGAAGGCGCTGGTGGAGTTATGCTC GAAGATTGAGACTGGTTTGGGATTAGGGTTGGATGAAGAGATCATCAAAGGGCTTGTTTCGTATTGCAACCTTGCTGAAC CGCGAGATGCTAAAGAGTATCTTGATGTAACCCTCGATTCCTTTCATTCTCTCTTTTTGATTGTTTTTCTTTCAATTTCT GTGGATTTAGGATAGTAAAGATTTGTTTTTGTTGAAATTAGGATCCAATTGCTATGGATTTAGGGTTTAGGGTTTCTATG TATCCTTACAATGCATTCATGTTTTATATTTGTGAATAATGCTTACTGAATTGTTGTATTGGTGAATGGAAAATCTTATA ATTTCTCTGTTTGATGGAAGATTTAACACTAGATAGTTTTATCTTTGTTTTGCATTGCAGAATATAATTGGTCAGGAAGC GGGGAAAGCTGTGATTGAAGAATATCTACAAAAGAGAGGTTACTCGGAATCCAGCGCCAGTTCAAATGTTCCGACTACCA AATTAAGTGCCTATGTGAAACCTTCTTCGGCTGACATATCTGCGATTGGAAGTAAGAAATCGAATAGAGCACCGAAAGCT GTGGCGGTTCGAGGTCAAGATGCAGTACCCAATAAGAATGAAGTGAATCAGACTCCAGCTTCTGGCAGTGAATCAAGAGC GTCACAAAATGGGAATCAAGTGAGTTCCAAAAAGAAGAAAGCTGGGAAAGTTGTGTCGCTTGCTGAGGCGGCGAAAGGGT CGATTGTGTTCCAGCAGGGGAGGCCGTGCTCTTGTCAAGCACGCCGTCACAGGCTGATCAGTAATTGCTTGTCTTGTGGC AAAATAGTTTGTGAGCAAGAAGGGGAGGGACCTTGCAATTTTTGTGGTGCGCTTGTGTTGAAAGAGGGGAGCTCTTATGC TGGCCTGGAAGAAAGTTTGTTACCCTTGTCAGAAAAGGAGGCTGCTGCTGAAGCTTATGCGAAGAGGCTTGTTGATTACG ACCGGAACTCTGCGGCTCGTACAACTGTTATTGATGACCAAAGTGACTACTATGAGATTGATGGGAATAGTTGGTTGTCA AAGGAGGTATTCTATTTTGTTTGCCTCTTGTAATCACATTCACATCTGATACTCTTTGAGCATGTTTAATTAGGCGTCTT TAAGATTTAGAATTGCGTGTGGGTACTAAAAACTATCGTGGGTAGCTTATTATTTAGTGATTCTTGAGTTTGCGTGATTT TACACACACCTTTTAAACATGCAATTTTTATCACATTCGGCAATTTAGTGTTTACAACTCTCTTCTTTCTTTAGGAAAAA GAACTGCTGAAGAAGAAACAAGAGGAGATGGAAGAAGCTGAGCGAGCCAAGCGGAATAGAGTTGTTGTGACTTTTGATCT AGTTGGTCGCAAGGTATGTATATTCTAACCATACGGTCTTACCTGAGGTTACTAGTTGCAGTGGCTGCAGCATGAATTCT CCAGTTGGATTGGAAACAAATGTGTTTTTTTTGTGTCAGTCTGTCCTGATATCTGCATGTGTATCTCAAGTTAATTTGTT TGTGCAATTGTTATTAATGGTTTTACATATTATTTTAATGAGTTATGATTTTTAATGAATCTAATTTGAATGTGACATGA AATAGTTCTTTTAGGATCATGTGCTATTAATTATTGTGGTTCTATACGTGGTTTTAAAGCAGAAACCTAAACTAGAAGTT CTAAGAACATTCTTGGTCTTCTTCACATTTTCCCATTGTCCTGCTTATATTGTTTTCTTCGTAGGCTTGTTTTCTGGAAA CCTTATTCTGGAAATATAATCATTCATATGTCGTTTACCCAACACTCCACAGCTTAAGCTTTTCGGATAATTGGTTCATG ATACCTAATGCTATGCAATGTGTTTTTTATAATTTATTTTGGATTCTAATCTATATCTTGCAGGTCCTTGTGAATGAAGA TGAAGTTTCAGAATTGCAGCCTGACAATAGAATATTACGTCCTCCAGATGAAAGGGAAGTGAACCGTATTAAACCAAACC CTACTCTCAAGATTCAGCCGGTATTCGTGGACCAGGGATTCAGTAAGAAGTCTGCTAAAGATAGGCAACCAAACAAAGGC CTCAGCAAGGGCATGTGCTTGGAGATTTCTGGGAGGGTGCAGCATGATAGCAATGACCTGAAGTATTTAATGAGGGAAAA CCAACTGGTAACAGCTTCAGATTAAAAAAATTTGGCTGTGCCTTCAGGAAATGCCGAAATAGAAGACTGCATGTTGTAGA TGATAGTGAATGTTTGCTTAACAATGATAATGAGTAGTGAGTTGTATAGCTTTTACTGATTATGGTTGCCCCTTTTCATT TGCTTACTCCCATTTTGCATATTGACTTTTGTGTCAAAGCCTTGAAATTAATGTTCCTAATTCTGTCTTGAAAGAAAGGA AGAAATATTAGAATTTTAATGAGTCCCCCCCCCCCCCCTTCAATGCTTGTGCAGATATCAATATCAATAATGTTACTGTA GATTTTACA
CDS sequence (LotjaGi4g1v0248600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCGGCGGGGGAGTGGTTGGAGAAGGCGCTGGTGGAGTTATGCTCGAAGATTGAGACTGGTTTGGGATTAGGGTT GGATGAAGAGATCATCAAAGGGCTTGTTTCGTATTGCAACCTTGCTGAACCGCGAGATGCTAAAGAGTATCTTGATAATA TAATTGGTCAGGAAGCGGGGAAAGCTGTGATTGAAGAATATCTACAAAAGAGAGGTTACTCGGAATCCAGCGCCAGTTCA AATGTTCCGACTACCAAATTAAGTGCCTATGTGAAACCTTCTTCGGCTGACATATCTGCGATTGGAAGTAAGAAATCGAA TAGAGCACCGAAAGCTGTGGCGGTTCGAGGTCAAGATGCAGTACCCAATAAGAATGAAGTGAATCAGACTCCAGCTTCTG GCAGTGAATCAAGAGCGTCACAAAATGGGAATCAAGTGAGTTCCAAAAAGAAGAAAGCTGGGAAAGTTGTGTCGCTTGCT GAGGCGGCGAAAGGGTCGATTGTGTTCCAGCAGGGGAGGCCGTGCTCTTGTCAAGCACGCCGTCACAGGCTGATCAGTAA TTGCTTGTCTTGTGGCAAAATAGTTTGTGAGCAAGAAGGGGAGGGACCTTGCAATTTTTGTGGTGCGCTTGTGTTGAAAG AGGGGAGCTCTTATGCTGGCCTGGAAGAAAGTTTGTTACCCTTGTCAGAAAAGGAGGCTGCTGCTGAAGCTTATGCGAAG AGGCTTGTTGATTACGACCGGAACTCTGCGGCTCGTACAACTGTTATTGATGACCAAAGTGACTACTATGAGATTGATGG GAATAGTTGGTTGTCAAAGGAGGAAAAAGAACTGCTGAAGAAGAAACAAGAGGAGATGGAAGAAGCTGAGCGAGCCAAGC GGAATAGAGTTGTTGTGACTTTTGATCTAGTTGGTCGCAAGGTCCTTGTGAATGAAGATGAAGTTTCAGAATTGCAGCCT GACAATAGAATATTACGTCCTCCAGATGAAAGGGAAGTGAACCGTATTAAACCAAACCCTACTCTCAAGATTCAGCCGGT ATTCGTGGACCAGGGATTCAGTAAGAAGTCTGCTAAAGATAGGCAACCAAACAAAGGCCTCAGCAAGGGCATGTGCTTGG AGATTTCTGGGAGGGTGCAGCATGATAGCAATGACCTGAAGTATTTAATGAGGGAAAACCAACTGGTAACAGCTTCAGAT TAA
Protein sequence (LotjaGi4g1v0248600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESAGEWLEKALVELCSKIETGLGLGLDEEIIKGLVSYCNLAEPRDAKEYLDNIIGQEAGKAVIEEYLQKRGYSESSASS NVPTTKLSAYVKPSSADISAIGSKKSNRAPKAVAVRGQDAVPNKNEVNQTPASGSESRASQNGNQVSSKKKKAGKVVSLA EAAKGSIVFQQGRPCSCQARRHRLISNCLSCGKIVCEQEGEGPCNFCGALVLKEGSSYAGLEESLLPLSEKEAAAEAYAK RLVDYDRNSAARTTVIDDQSDYYEIDGNSWLSKEEKELLKKKQEEMEEAERAKRNRVVVTFDLVGRKVLVNEDEVSELQP DNRILRPPDEREVNRIKPNPTLKIQPVFVDQGFSKKSAKDRQPNKGLSKGMCLEISGRVQHDSNDLKYLMRENQLVTASD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 395 | 392 | 5.4E-130 | – | |
| PANTHER | 4 | 395 | 392 | 5.4E-130 | ||
| MobiDBLite | 109 | 151 | 43 | - | – | |
| MobiDBLite | 122 | 151 | 30 | - | – | |
| Pfam | 173 | 214 | 42 | 2.4E-13 | ||
| Coils | 272 | 296 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0248600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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