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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0248700 |
| Transcript ID | LotjaGi4g1v0248700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TCP family transcription factor; TAIR: AT3G47620.1 TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14; Swiss-Prot: sp|Q93Z00|TCP14_ARATH Transcription factor TCP14; TrEMBL-Plants: tr|V7CAU9|V7CAU9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0248700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60159912..60163111) extracted from Lotus japonicus Gifu genome v1.2.
CACAAATCAAAACAAACAAATATCTAAGATTTTTCCACTTCAAGCTGTCCATACAACTAAAAGGAAAATGAAAAAAAAAA CAAGAAATATCAAGTTATACAATGAAAAAGCTCATCACAACAACAAAGCAATTTCTTTTCTGAAAAAAACCATGCTTTTT AAAGCTCACCCATATAATTCCCACTCATTATCTTTGTTGCTTAAAGCTCTTGTTGCCCTCCCACTCCTAGCTACCCCTTA TCTCCTCTCACTCTTCTTTCTCTCTCTCTCTAAACCACATCAATTCCAAGGGCAAAGGAAGAAACAAATAACTAGACACA CACACACATCTCTTCCTCTAAATATATTTTCAGTTATGAGAATGAGAGAAAGAAAGACCCACCACACAGATTAAACTATA CACTCACTGATCACACTCACTCACTCACACAAATAAACAAACACATACACTACAACTTTTCATTCTCTATCTTCTCCTTC TCCATGCGATCATGGACGGAGGTGATGATTTCCACCACCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTGGAGAAG AAAGAAGACCAAGAACCCGCCGCCTCGTGCTCCACCTCCTCCCCATACCCTTCCCTAGCAATCTCTGCAGAACAACCCAG CACGTCCAATTCAACCCGATCCAATAACCAGCAGCTGGTACCGGCACCGGAGGATCCAGCTCAGGGGAAAAAACCTCCGC CGAAGCGGACCTCCACCAAGGACCGCCACACCAAGGTGGAGGGCCGCGGCAGGCGTATCCGAATGCCGGCCCTCTGCGCC GCTAGAGTTTTCCAACTCACCCGCGAGCTCGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCTGA GCCCGCCGTCATCGCCGCCACCGGAACGGGAACAATCCCGGCGAACTTCACCTCGCTCAACATCTCGCTCCGTAGCTCTG GCTCCTCCATGTCGGTTCCTTCCCAGCTCAGATCCTCGTACTTCAACCCGAACTTCTCCGTCCAGCAACGGCGGAGCATG TTCCCCGGGATCGGACTTTCCTCCGACAACTCCGGCGTCGGGACAACGCTGCTGAATTTCCAATCCGGCAACCTCGCCGC CGGGATGCTGCAGCAGGCAAAGCAGGAGCAGCAGCTCCGCGACGGCGGCGGCGGCGCGCCGTCGTCGTCGACCATTGACT TATCAGAAACAACTACAGAAGAAAGCCTCGGAAGGAAGAGAAGACCATCGGAACATCACCATGACCAGATGGGAAGCTAT CTCCTCCAGTCAAGTGCAGGCGCGATTCCGGCTAGTCAGATTCCGGCGAACATATGGATGGTGCAGGCGAATTCCAATAA CCAAGTCATGGGTATCGGCGGCGGTGGTGGTGGTGGTGGCGGCGGAGGTAGTGGTAATGACCCTGTTTGGACTTTTCCAC CGATGAACAACAGTGCTTTATACAGAGGAACCATGTCAAGTGGGTTACATTTCATGAATTTTCCAACACCCATGGCCTTG TTACCGGGTCAGCAACAACAACAAATGGGTAGTGGAAACAACAACATGAATCATCATGAAGGGCATTTGAACATGCTTGC AGGGTTAAGTGCTTATAATCGTTCTGTTTCTGAGTCTCAGCAACAACAACAACCAAGTGGGTCTCAACAGTCACACCGTG GTGGAAGCCATGATGAACGCCATGATAACAGCACCAGCCACGACTCTTAGAAGAAGAAGCATCAATCATGTTCATCATTT CATCCACCACCACCAGCTTCATGATCTTCTTCTTCTTGCTTGTGTAGTAGTGGTTGTGTTTAATTAACACACGTGAGAGG TTTGGTTGATTGATTGATCTTCAAAATTGAGTTTTATTATTATTTATTATTCCAAAAGATTAATTTTTTAGTGTGATTAA GATTTTGGAGGAGATGGGGTTGATGCAAATTGCAAGAGAAGAGAAGAAGATTAAGAGGGTTGGTTTTTTACTTTTTAGGG TTTGGGATTGAGAAGATGACACTATTTAACATTTGGGTATTTGCCTCTGCCTGTTATTTTTTTCTTGTGGGGTAAAAAAG ATGTCTTCTTTGAGAGTATTTATTTATCACTACACAATAGTATCTTATGATCATCATTGTTTGTGCAATTCTCTTTATTT GCTTTGTAATTTGATGCTTTTCATGTGGAAGAGAGAAACGAAGAAAACGACTCATCACTTCTTTGCTGAGTTAGTTCCCT ACCTAACAGGCATTATTTTGGGGTTATTTTTTTACTTTCTTTTACTTTTCTCTCTATCTTTCTGGGCCAGAATGCTCGTG TGGTAAAATAAAAGGGATGGATAAAACAGTGATTGTTACTGCCAGTGAGTGTGGTGATATTAAATTTTACATTGCTTTTT GATCATTGAGAATGTGAGGAAATGGGTTTATTACTGCATGAATGATTAAGAATTAGGGGTAATAGGACGTTGGGTAGGGT CAGGGGCCTTATCGGGTTCCAGGTGTTGGGTCAGGTGGTGGGGTCAAGGTGCTGGTTATTGCCCAAACCAATGTACCATG TCACTGACAAACAGGTGGATCATTCCCCATCTTCTCTGTTCTTTTTTTAAAAAAATTAATCTTTTTCTTTTGCTCTTTTA ATGGAGCAGTTGTTGCTGGCAATGGCATCACAGAGAGATCCATCACCATGGTGAGTCTTAAATGACCCTACTGGGATAAT AAGGCCCACCATCCATCAATCAGGACCGTTCATTTCATGGGGTCCATGTCCTCTTCATGGTCGTATTGAATGATTGGGTC TGTGCTCAGCAATGGGAAAACGTGGAATCTTAATCTGGAGTTGAGTTTCATTTGATGCCCTTCAATTCAATTACTGTCTC CCTCCAAAATGTTTTGAACAATTGATAGTTGCTAGCTACTACCACACAATTGGCAAATGGATTTTCTAATCTTCTCCCCC TATATGTCTATTTTTATATATTTTATTTTGTGCCTGTCTCTGATTCTTCATTTTGCTTGACATAAGTCCCTTCTTAGTTT TCCTTCATAGTCAATTTGGCATGCTTTGAAATCTTTCATCTATAAAACTATTAATTTTTTGAAACCAAAATTAGTTCCGG TGAGAAACTTATACGAGTATATAGTAACTTCTGAATTGGAGAATTGATTCTAATTCTTTAAAAGTGATTATGAGGTTTTC
CDS sequence (LotjaGi4g1v0248700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGGAGGTGATGATTTCCACCACCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAAGACCA AGAACCCGCCGCCTCGTGCTCCACCTCCTCCCCATACCCTTCCCTAGCAATCTCTGCAGAACAACCCAGCACGTCCAATT CAACCCGATCCAATAACCAGCAGCTGGTACCGGCACCGGAGGATCCAGCTCAGGGGAAAAAACCTCCGCCGAAGCGGACC TCCACCAAGGACCGCCACACCAAGGTGGAGGGCCGCGGCAGGCGTATCCGAATGCCGGCCCTCTGCGCCGCTAGAGTTTT CCAACTCACCCGCGAGCTCGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCTGAGCCCGCCGTCA TCGCCGCCACCGGAACGGGAACAATCCCGGCGAACTTCACCTCGCTCAACATCTCGCTCCGTAGCTCTGGCTCCTCCATG TCGGTTCCTTCCCAGCTCAGATCCTCGTACTTCAACCCGAACTTCTCCGTCCAGCAACGGCGGAGCATGTTCCCCGGGAT CGGACTTTCCTCCGACAACTCCGGCGTCGGGACAACGCTGCTGAATTTCCAATCCGGCAACCTCGCCGCCGGGATGCTGC AGCAGGCAAAGCAGGAGCAGCAGCTCCGCGACGGCGGCGGCGGCGCGCCGTCGTCGTCGACCATTGACTTATCAGAAACA ACTACAGAAGAAAGCCTCGGAAGGAAGAGAAGACCATCGGAACATCACCATGACCAGATGGGAAGCTATCTCCTCCAGTC AAGTGCAGGCGCGATTCCGGCTAGTCAGATTCCGGCGAACATATGGATGGTGCAGGCGAATTCCAATAACCAAGTCATGG GTATCGGCGGCGGTGGTGGTGGTGGTGGCGGCGGAGGTAGTGGTAATGACCCTGTTTGGACTTTTCCACCGATGAACAAC AGTGCTTTATACAGAGGAACCATGTCAAGTGGGTTACATTTCATGAATTTTCCAACACCCATGGCCTTGTTACCGGGTCA GCAACAACAACAAATGGGTAGTGGAAACAACAACATGAATCATCATGAAGGGCATTTGAACATGCTTGCAGGGTTAAGTG CTTATAATCGTTCTGTTTCTGAGTCTCAGCAACAACAACAACCAAGTGGGTCTCAACAGTCACACCGTGGTGGAAGCCAT GATGAACGCCATGATAACAGCACCAGCCACGACTCTTAG
Protein sequence (LotjaGi4g1v0248700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGGDDFHHHHHRQNFPFQLLEKKEDQEPAASCSTSSPYPSLAISAEQPSTSNSTRSNNQQLVPAPEDPAQGKKPPPKRT STKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSM SVPSQLRSSYFNPNFSVQQRRSMFPGIGLSSDNSGVGTTLLNFQSGNLAAGMLQQAKQEQQLRDGGGGAPSSSTIDLSET TTEESLGRKRRPSEHHHDQMGSYLLQSSAGAIPASQIPANIWMVQANSNNQVMGIGGGGGGGGGGGSGNDPVWTFPPMNN SALYRGTMSSGLHFMNFPTPMALLPGQQQQQMGSGNNNMNHHEGHLNMLAGLSAYNRSVSESQQQQQPSGSQQSHRGGSH DERHDNSTSHDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 402 | 402 | 1.2E-136 | ||
| MobiDBLite | 1 | 95 | 95 | - | – | |
| PANTHER | 1 | 402 | 402 | 1.2E-136 | – | |
| MobiDBLite | 30 | 65 | 36 | - | – | |
| MobiDBLite | 72 | 95 | 24 | - | – | |
| Pfam | 80 | 254 | 175 | 9.9E-41 | ||
| ProSiteProfiles | 82 | 136 | 55 | 27.869 | ||
| MobiDBLite | 215 | 259 | 45 | - | – | |
| MobiDBLite | 215 | 241 | 27 | - | – | |
| MobiDBLite | 242 | 258 | 17 | - | – | |
| MobiDBLite | 372 | 412 | 41 | - | – | |
| MobiDBLite | 373 | 395 | 23 | - | – | |
| MobiDBLite | 396 | 412 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi4g1v0248700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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