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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0248800 |
| Transcript ID | LotjaGi4g1v0248800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT3G47640.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SN74|BH047_ARATH Transcription factor bHLH47; TrEMBL-Plants: tr|A0A151SL52|A0A151SL52_CAJCA Transcription factor bHLH47; Found in the gene: LotjaGi4g1v0248800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60178187..60180917) extracted from Lotus japonicus Gifu genome v1.2.
TCCTATATAAACTTTGCAATAAAATGGAAAATGAAGAAAAGCCAAGAGGACTCACGTGGGTAACTCAATGGAGGTGGGTG ATCGCAGCAAAAGATAATGACCTCTCCACGCGCCTTCGTGTGACCGGTGTCCTCCCGCCACACTCCATTGCAGTAACAAA TCTTATTTCTCTCTCTTCTGCCCTAATTTCATTCAAATCTTCCATTTCTCGCTTCCAATTCTCAATAATCATCATCCACT TCATCCTCTAATTTCACTCTGATTCACAATTCAACATATTCCAATTCGATACCTTCAGATTCATCTTCCAAGAGGTGGGT CACCAAAACCACTTCTTCCCTTTTCTTCTTTTTGTTTTGTTGGGTGATTGGGTCGATTTCCATTTGATCTGTTGAATTTC GTGATGCTCTGTTTGTTTTCTATGATTTTGGGAACTAAAGTTGGGAACTTTGCTTATTTATATTGATGGGGTTACAAGGG AAGGGGTTCATTGCACCTGGAACACAAACATGAAACATGGGCTTTACTTTGTTATCACCAGTAAAAAAATTGAAAGAAGG AAGAAAATATTCAGTTTTCCTTGTATTTCATTTTGGGGTGTTCCATTTGCTTGTCCTGTTTTTGAAGGGTGAAAAGTTTA GATAGTCTTGTTTTTCTACATCAGGAAATAGCTGGTTTAGCTGATATGGGTTCAGAGAGTCTGGGTCCGGTGGTTGAGAC ATCAGAAAACAGGTCAGAGATTTGTTACATTAAATTGGCTTTCTTACATTATTTCTTGGGGGGAAATTTCTTGAATTGTT TCAATAATTTTGATGTATGAATTGATTTAAGTATAAATATCGATTGTTCTGTGTGTTCAAACTTTGATGCTATTGGATAC TTCATTTGGTTGTACTTGTTTCTACCACAAATGTTAAAATTTAGATATAACTAGTGATAAGAAGTGGTGGTGGTGGTGGT GTTTGTTGCTGCGGCGGCTATAGTAGTTATTACAATACTAATAGCACTGCATGCTGGGTGTCTCTTGCATGAGTAGTTTG TGTGGAACAACAGGTTCATTATCTGGATTCAGTTTTTTTGTAAATTTGATTTGCTTCAGGTCTTCTGGTAAAATGAACCA AGGGAAAGCCCCCAGGAGAGTTCACAAGGCTGAACGGGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGATC TTGCCAATACACTTGGTAATCCCTTGTACCACTATTTTGTATCTTGAATATGTTCAAATTTTACTTTGGGACTTGTTTGC TCCACTCAACATGGCAATTACATTTGTTTTTAGTTTGTATATCATGCCACCTTTGACATGTTATCTGATATGCTTTTTTG TGATTCTCTTTTTTCCTTTTCTTTGGTTTTTGGGGATAGATCTAAATGAGCAGAACAATGGAAAGGCTTCTATATTGTGT GAAGCTTCTAGGCTGCTAAAGGACTTGCTCTGTCAGATTGAGTCCCTCAAGAAGGAGAACGTATCTCTGTTGTCTGAATC TAATTATGTAAGATTGGCACTCTTTTCCTCCATTTCCCTTCATTTTACCCTTTTTAGAGTACTGCATGTTGAATTTTGAT TTATATCCAGAAGAGTTTTTATCATTTGCTAGGTGACTTGAAATCCTTTCTGTTTAAGTAATCTTTCGACTAGTTACTTG AGCTGATTGGCATTTAATCATACTTTGGAAATCAATACTTTGATGTCCCATATCAAACACATTCTTGTATCTGGTTGTAT TTGCCATTTGATGTGTTTGGCTTCATTGAGCAGGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCTTAGA AACCCAAATTGAGAAACTTCAAGGTGAGATTCAAGCAAGAGTTGCACAGTCTAAACCAGACCTGAATGCACCTCCTCATT TGGAACTTGAGCCACCAGAGCAGACAAATTTTCCTGGACAATCTATCCAAGTGCCTACCATGGAACCTACCTTGCCGCAA GGACCTGCGGTTTTGGTTGTTCCCTTTCGCCCCGATCTTCAAACTGCTTTTCCGGTTCCTAATATATCTGAGCTCATGCC AAAACCTGCACCTGTTGTCAGCAAACCTCATGCCAGGTATCCTACACCGGCAGATTCATGGCCCTCAAAGCTGCTTGGAG AGCAACCAACTTCAAACTAAACTTGTTAATTTGTAGAGTTCTAGTTTCAGTATTGGTATAACCTGCCAATGACCCTTTAC TAATAGCAATGCCGCTTTGTTTCTTTGTAGCTTTCGTATATAAATTCTATAGATTCAATGATCTTAGAGTTGGATTGAAT TCCAGAAAGTGAACTGAATAGCAGTTAAATCCGTTGGGGATCTCAAACTTCAGAATAGCAAACTGTTTAAGGGACTCTCA TCGTGAAGACGTGAACAATAAAATACAAGACACTTTTACTCTCATCTGTTTAGAAAATAACAATCCTAATTTACTTTTGG CTCAATTTTATTCACCTTCCTTTGCTTTTTTTTAACTGGCTCATAGCATAAAAATCCCATGTGTCTTCAGATCATTTGGT CATGAATAATCTTTATGTTGTGTATATCTAACAAATCTTTCAATGCGTTATCAGGTGTTAAAGATAAGTTCTTTTTTCAT ACATTAATCAAATAGTTGAATTTAGATCACATATTTAAGGGGTTGAATTCTTTTTGCACGATGGTGGATGAAATCTTTTC ATGACACTTCT
CDS sequence (LotjaGi4g1v0248800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTCAGAGAGTCTGGGTCCGGTGGTTGAGACATCAGAAAACAGGTCTTCTGGTAAAATGAACCAAGGGAAAGCCCC CAGGAGAGTTCACAAGGCTGAACGGGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATACAC TTGATCTAAATGAGCAGAACAATGGAAAGGCTTCTATATTGTGTGAAGCTTCTAGGCTGCTAAAGGACTTGCTCTGTCAG ATTGAGTCCCTCAAGAAGGAGAACGTATCTCTGTTGTCTGAATCTAATTATGTGACCATGGAGAAAAATGAGCTGAAGGA GGAGAATTGTAGCTTAGAAACCCAAATTGAGAAACTTCAAGGTGAGATTCAAGCAAGAGTTGCACAGTCTAAACCAGACC TGAATGCACCTCCTCATTTGGAACTTGAGCCACCAGAGCAGACAAATTTTCCTGGACAATCTATCCAAGTGCCTACCATG GAACCTACCTTGCCGCAAGGACCTGCGGTTTTGGTTGTTCCCTTTCGCCCCGATCTTCAAACTGCTTTTCCGGTTCCTAA TATATCTGAGCTCATGCCAAAACCTGCACCTGTTGTCAGCAAACCTCATGCCAGGTATCCTACACCGGCAGATTCATGGC CCTCAAAGCTGCTTGGAGAGCAACCAACTTCAAACTAA
Protein sequence (LotjaGi4g1v0248800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSESLGPVVETSENRSSGKMNQGKAPRRVHKAEREKMKREHLNELFLDLANTLDLNEQNNGKASILCEASRLLKDLLCQ IESLKKENVSLLSESNYVTMEKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNAPPHLELEPPEQTNFPGQSIQVPTM EPTLPQGPAVLVVPFRPDLQTAFPVPNISELMPKPAPVVSKPHARYPTPADSWPSKLLGEQPTSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 224 | 224 | 1.7E-103 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 1 | 224 | 224 | 1.7E-103 | – | |
| Gene3D | 24 | 101 | 78 | 8.7E-6 | ||
| CDD | 25 | 82 | 58 | 7.51018E-4 | ||
| SUPERFAMILY | 25 | 91 | 67 | 8.11E-11 | ||
| ProSiteProfiles | 27 | 77 | 51 | 10.575 | ||
| Coils | 74 | 94 | 21 | - | – | |
| Coils | 102 | 122 | 21 | - | – | |
| MobiDBLite | 187 | 225 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0248800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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