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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0249400 |
| Transcript ID | LotjaGi4g1v0249400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit; TAIR: AT5G62440.1 EMB514 (DUF3223); Swiss-Prot: sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase V subunit 1; TrEMBL-Plants: tr|A0A0B2QEQ7|A0A0B2QEQ7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0249400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60243919..60246048) extracted from Lotus japonicus Gifu genome v1.2.
TAAATAGGGTTTTTTAGTTTCAAAAAGGGTTACAGTTAAAAACTCAGAACCTTTACATGGCGGAAACCGCTACACCGGAA CCGGTAACCGTCGAGCAAACCACCGGGCCAGCTGCCGCCGTAGACATGGTTGTAGAAAACGCCGTACTCGCCGGCGTCGA TTCAGCAGCGAACGGCGAGTCCAACCTGAAGCGGCCCAGAGAGGATGAAGAAGAAGAGGGTGTTTCTAAGATGCCGAAGG TGGGTGAAGAAGAGAAGAAACCATCAGGTCCCGTGAAATTGGGTCCCAAAAGCTTCGACTCTTCCAGGGAGATGTTCGAT TACTTCTACAATTTCCTTCATGTTTGGCCTCCTAATGTTAATCTCAACAAGGTAGTTCCACACTTCTGATAGTTGTCCTT TGTAAATTGCACAACAGCTTTGATTTGAAAGGGTAGCTAATGTATGGATTGGATGGATTTTTGATTGAATCATAATCAGG CATGAAACTAGAAAAAAAAAAGGGTAAGAAGGGTGGAAATTTAACACATATTAAGCAAAATAATAATGGCTAGTTGGAGA AGGTAGTATAGAATTTGAGTTGGACAAATACAACATTTGAATACTCTTATATATGGAGTAAAAATAAACCATTAATTCAT TCGTGATGCATTAAGTCATCCTAACCATCCATGAGTCCATGACCTATTTAATCCATGTAAGACCATTTTTAGGGGATAGG ATGAATGAACATCCAACTTATTATGAAATCATATTTCAAAAACACCCTCATACACAGTCACGCTATCACTGATCTGTAAG CAAGATGTTTGATGGATGGTGAGTTTAAGAGTTAAGGAATTATGGAGTGGAAAGGGAAGGGATATCCATTAACCATTCAA TAGCTGTTTCAGTTGGACAGTTGGTCCTTCAACCAACCCGTTAACTAATATAGACCAAACCCATTTAATCTTTTATTATA ATTGGATAGATGGACCTGATGGATGATGGATTAGTGTGTCTGATTGCCTCCCCTTGTATAGGTAAAAGAAGACGTCTGCA ATCTTAGGTTAGCCTTTTTACATTTTTGCGACTATGCTTGTGTTGTTGTTGCAACTTTGGCACTTCATGTGTTTGGCAAT GTCCTTTTCATGTGTTTTTTTTTTGTTTTTGTTTGGGGGGTTGTGAGATGGTTTTCAATGTCACCAAAATGTGACATGAC AATCCAAATTCGCTTGTGTATAAATGTCAGGATTAACATTTGAAATGCTTGCAATTCATGACTACCTTATGGATAGCTTG AGTTTTGAATCAGTTCAATCTTAATATGTTGTCTTAGAAATGTATCTTGGTGATGCAGTAGCCAAGTCTGAATTTAATTC GTACTGAATTTACTCTGGGTTATTTTGTGTGGCAGTATGAACACATGGTGTTACTGGAATTGCTTAAGAATGGCCACACG GAGCCTGATGAAAAGATTGGCGGAGGAATTCTTGCTTTCCAAGTCCGCAAGCATCCTATGTGGAAAAGTAGGTGTTTCTT CCTCATCAGGGAGGATGAATCTATTGATGATTTTAGCTTCCGTAAATGTGTGGATCATATTCTTCCATTGCCAGAAGAGA TGCAATTGAAACCTGATGTTAACAGGGCATTAAAGCGTCACGGCAAAAAGGGTGGTGGTGGTGGTGGTGGAAGAGGAGGT GGACGTGGTCGTGGCCATGGGAGAAGGGGGAAGTCACATTGAGCGCAACGGTTACTGCAGGTCTTAGTATTGTTTTAAGA TTATAATGTTTTTGTACACCTGACCATATTATTTCATGTTTTCTACTAGTAATTTATAATTCAGATTTTGGCTTTTTATC ATATGCAGTTATATTTCTTCCCTGATCCTTTGCTGAATGGTGGCCTTCAGTACAATTTCAGTCGATAATAAGCCATTAGG GAATTTGGGTTTCTTGCACTGTCATTTCTATTATAAAATGACAGAGCACTAAATTTTGGAATAGTATATTTTGTTCTAGG GTATGTGGAGTTTTCCATTGATTCAACGTTCTACCATCCATCACATACGTTTTAGCTTCTTGTGTAATGCAATGAATTCA TTTCTTATTTTCTGATCCTCTCTTTAAAAAAAAGCTCATTATGATTAAAG
CDS sequence (LotjaGi4g1v0249400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAACCGCTACACCGGAACCGGTAACCGTCGAGCAAACCACCGGGCCAGCTGCCGCCGTAGACATGGTTGTAGA AAACGCCGTACTCGCCGGCGTCGATTCAGCAGCGAACGGCGAGTCCAACCTGAAGCGGCCCAGAGAGGATGAAGAAGAAG AGGGTGTTTCTAAGATGCCGAAGGTGGGTGAAGAAGAGAAGAAACCATCAGGTCCCGTGAAATTGGGTCCCAAAAGCTTC GACTCTTCCAGGGAGATGTTCGATTACTTCTACAATTTCCTTCATGTTTGGCCTCCTAATGTTAATCTCAACAAGTATGA ACACATGGTGTTACTGGAATTGCTTAAGAATGGCCACACGGAGCCTGATGAAAAGATTGGCGGAGGAATTCTTGCTTTCC AAGTCCGCAAGCATCCTATGTGGAAAAGTAGGTGTTTCTTCCTCATCAGGGAGGATGAATCTATTGATGATTTTAGCTTC CGTAAATGTGTGGATCATATTCTTCCATTGCCAGAAGAGATGCAATTGAAACCTGATGTTAACAGGGCATTAAAGCGTCA CGGCAAAAAGGGTGGTGGTGGTGGTGGTGGAAGAGGAGGTGGACGTGGTCGTGGCCATGGGAGAAGGGGGAAGTCACATT GA
Protein sequence (LotjaGi4g1v0249400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETATPEPVTVEQTTGPAAAVDMVVENAVLAGVDSAANGESNLKRPREDEEEEGVSKMPKVGEEEKKPSGPVKLGPKSF DSSREMFDYFYNFLHVWPPNVNLNKYEHMVLLELLKNGHTEPDEKIGGGILAFQVRKHPMWKSRCFFLIREDESIDDFSF RKCVDHILPLPEEMQLKPDVNRALKRHGKKGGGGGGGRGGGRGRGHGRRGKSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 211 | 199 | 4.3E-84 | – | |
| PANTHER | 13 | 211 | 199 | 4.3E-84 | – | |
| MobiDBLite | 33 | 77 | 45 | - | – | |
| MobiDBLite | 42 | 72 | 31 | - | – | |
| Gene3D | 68 | 168 | 101 | 5.4E-28 | – | |
| Pfam | 92 | 164 | 73 | 5.3E-23 | – | |
| MobiDBLite | 184 | 213 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0249400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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