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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0250300 |
Transcript ID | LotjaGi4g1v0250300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein,; TAIR: AT5G61430.1 NAC domain containing protein 100; Swiss-Prot: sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100; TrEMBL-Plants: tr|A0A072URG4|A0A072URG4_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi4g1v0250300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60351043..60353450) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGCTTTTAGGCTATAAACAACCAACCCAGGTTACCTTACATTCCACGTTTCCTCCTCCCAGTATTTATGGCCTTCTT TTCCTCTCTCACTTTTCTTCTCATATTCAAAAACCATCCCCTCCCCATCCTTCAGTTTCTTCTTGTCTTAGCCTGATTTT CATCATCACTACCCTTCCCTTCCTCTCTTCAATTCTTCTCTTAAACCTCTCACTGATAACTAGCTACAAAGCTCTTCTGT GAGGCCTTGATATTGAAAATTGAGATTGACCCATCTTAGCTTCTTGATCAAAGCTCAAAACATTGAATTCTGATAAGGAA GAAAGAGGAGGGTTTTTGAAGGGTAGTTTGAATCAATGGAAAACATCTCAGTGCTATCTAAGGAAGAGGATCAGATGGAT TTGCCTCCTGGATTTCGATTTCACCCAACTGATGAAGAGCTTATTAGCCATTACCTCTACAAGAAGGTCATTGACATCGA ATTCTCTGCTAGGGCCATTGGAGAAGTGGACCTCAACAAGTGTGAGCCTTGGGATTTGCCATGTAAGTGAAATCAATCAA ATTCCCAGACTCGCCTTTTGATTTTTCTTTGGCTTTTCACTTTTGATTTGATGTGTGTCCACTTTGCCTTATGCTGTTTC GAAATTTGAAACTTTATGTATGATTTTGGATGCAGGGAAAGCGAAAATGGGAGAGAAAGAGTGGTACTTTTTCTGTGTGA GGGACAGAAAATACCCAACAGGGTTGAGGACAAACAGAGCCACAGAAGCAGGGTACTGGAAAGCCACAGGGAAAGACAAG GAGATTTTCAGAGGAAAATCGCTGGTTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCACCCAAAGGAGAGAA AAGCAATTGGGTCATGCATGAGTATAGGCTTGAAGGGAAATTCTCTGTTCACAACCTCCCTAAAACTGCAAAGGTAATTG ATTGTCCTGTTTTTTTCTAGATCCTCTGTTTTCAAAGTTAGACATTATTGTTTGTTATTAATGAATGGCTATGCGTGAGG TCCGGCCGGGTCCACTTTGTAGATTTAATGTAAGCAGTCTTATCTTGCACTTTAGCAAGAGATAGATTACTAGGCTCGAA CATGTGACCGCAAATTCACATGTCAGCAACCTTACTTACATGTTACTAATGCTGATTGATTTTGTTCCTTTTATTGCAGA ACGAGTGGGTTATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACACATATTTCTGGGATAATGAGGTTGGAT TCTTTGGGTTTGGGGCATCATGAATTGGGTTCTAGTCTTCCACCTCTCACAGATTCATTGTCTTCCATTAATAAGACAAA AGCTCTGCTTGATTCGGCTTACGTGCCCTGCTTCTCCAATCAAATTGATGTTCAAAGGAATCACCAAGGAGGGATCTATG ATTCCTTTTCCAACTCCATCTATGGAGTTTCTTCAAATCCATTAGAATTTTTTCCAAGAGTCCCACCTTCTTCTGGATCC TTATACTCGACTACTCAAGGTGTTCAAGTTCCATCTAGTTTGCCATTTCCAGGTTCTGTTTACAGCATGCAGGACCAGGC TATTCTGAGAGCCTTATATGAGAATAATGCTTCAAATTTTGTCAATGGATTCAAGGCTGAGAGGGACATGGTTAGTGTCT CTCAGGAAACTGATTTGACTACTGATATGAATGCTGAAACCTCTTCAGTGGTATCAAATTTTGAAATGGGTAGGAGGAGC TTTGAGAATCAGAATCAAAATCAAAATCAGAATCCTCCACCTGCTTCTGCTGCAGGAGTGGACCATGATCATGGTCTGTG GAGCTACTAAACTCAAATTAAGAAAAGAAAAGAAAAACAACTTTTGAGCTAAGAAGAAAGAGCCTGATCAGTTACAAGGG ATTGATGGTGTTAATTGTCTATGTATAGATTTTATCTGAACGAATTATTACTGAAGCATATGATATGTTATGTTGTCAGT ATAAGAAATCTTGTGAAATTAAGGTGTTTTTGTCCTTTGTTATTATAGGCTTGTGCCTGGCATGAGCACCATTATTATTT TGTTTTAAATTAAAAATTATGATACTGGAATGAGACTCATTAGGTATATTATTGATCTTGCTTGTTGATCTTGCTTTTGT GGATTGTATATTATTATAGTCCAGCTAATACACTAAGTGATGACCCTGATTGAATCTGTTAATATCTGAATTCCATATTA TTGTTTAGGTTTAGAATGTGGGGATATTCAGGTTACTCGTAGTCAGATATTTTCTGGATTCACGCCTTCGGTCAGTTCAT ATAATTCATCAACATTTGAAGGCATGTATATGTTTAAAATCTGAGTCGAATAACCTTAATCAAATGACTCAGATTGCATA ACTGTGCG
CDS sequence (LotjaGi4g1v0250300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACATCTCAGTGCTATCTAAGGAAGAGGATCAGATGGATTTGCCTCCTGGATTTCGATTTCACCCAACTGATGA AGAGCTTATTAGCCATTACCTCTACAAGAAGGTCATTGACATCGAATTCTCTGCTAGGGCCATTGGAGAAGTGGACCTCA ACAAGTGTGAGCCTTGGGATTTGCCATGGAAAGCGAAAATGGGAGAGAAAGAGTGGTACTTTTTCTGTGTGAGGGACAGA AAATACCCAACAGGGTTGAGGACAAACAGAGCCACAGAAGCAGGGTACTGGAAAGCCACAGGGAAAGACAAGGAGATTTT CAGAGGAAAATCGCTGGTTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCACCCAAAGGAGAGAAAAGCAATT GGGTCATGCATGAGTATAGGCTTGAAGGGAAATTCTCTGTTCACAACCTCCCTAAAACTGCAAAGAACGAGTGGGTTATT TGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACACATATTTCTGGGATAATGAGGTTGGATTCTTTGGGTTTGGG GCATCATGAATTGGGTTCTAGTCTTCCACCTCTCACAGATTCATTGTCTTCCATTAATAAGACAAAAGCTCTGCTTGATT CGGCTTACGTGCCCTGCTTCTCCAATCAAATTGATGTTCAAAGGAATCACCAAGGAGGGATCTATGATTCCTTTTCCAAC TCCATCTATGGAGTTTCTTCAAATCCATTAGAATTTTTTCCAAGAGTCCCACCTTCTTCTGGATCCTTATACTCGACTAC TCAAGGTGTTCAAGTTCCATCTAGTTTGCCATTTCCAGGTTCTGTTTACAGCATGCAGGACCAGGCTATTCTGAGAGCCT TATATGAGAATAATGCTTCAAATTTTGTCAATGGATTCAAGGCTGAGAGGGACATGGTTAGTGTCTCTCAGGAAACTGAT TTGACTACTGATATGAATGCTGAAACCTCTTCAGTGGTATCAAATTTTGAAATGGGTAGGAGGAGCTTTGAGAATCAGAA TCAAAATCAAAATCAGAATCCTCCACCTGCTTCTGCTGCAGGAGTGGACCATGATCATGGTCTGTGGAGCTACTAA
Protein sequence (LotjaGi4g1v0250300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENISVLSKEEDQMDLPPGFRFHPTDEELISHYLYKKVIDIEFSARAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVRDR KYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVI CRVFQKSSAGKKTHISGIMRLDSLGLGHHELGSSLPPLTDSLSSINKTKALLDSAYVPCFSNQIDVQRNHQGGIYDSFSN SIYGVSSNPLEFFPRVPPSSGSLYSTTQGVQVPSSLPFPGSVYSMQDQAILRALYENNASNFVNGFKAERDMVSVSQETD LTTDMNAETSSVVSNFEMGRRSFENQNQNQNQNPPPASAAGVDHDHGLWSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 371 | 365 | 9.4E-135 | – | |
PANTHER | 7 | 371 | 365 | 9.4E-135 | – | |
SUPERFAMILY | 12 | 166 | 155 | 6.15E-65 | ||
ProSiteProfiles | 16 | 166 | 151 | 59.675 | ||
Pfam | 17 | 141 | 125 | 4.6E-40 | ||
Gene3D | 25 | 172 | 148 | 4.3E-60 | ||
MobiDBLite | 345 | 371 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0250300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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