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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0251700 |
| Transcript ID | LotjaGi4g1v0251700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HNH endonuclease family protein, expressed; TAIR: AT1G18680.1 HNH endonuclease domain-containing protein; Swiss-Prot: sp|B0JWW6|DXR_MICAN 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TrEMBL-Plants: tr|A0A072UQM8|A0A072UQM8_MEDTR HNH endonuclease domain protein; Found in the gene: LotjaGi4g1v0251700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60542882..60547176) extracted from Lotus japonicus Gifu genome v1.2.
AATTAAGCCTATAAATTATTTAATTTTAAGTTAAAAAAGTTATATTCCATTATCATCTTTTATTGAAATGTCAAATTATT ATTTTTTAAGTCTCTCCCCCCAACCCAAATTCTTTTTTTCTCCGATCAGCTAGCGCGGATGAGTTCCTCGCCTCACCGTC CTCGCGGCGACGGCAACGGCGAGAACAGGCCGAGATCCTTCGACTCAAAGACGAAGACCATCTGTTGGACGAAGGCGGAT GTTGTCCCCGGCCGTCACCCTGACCGGTGGCGCAAAGACGCCGCCGGCAACATTGTCTGCAAGCGTTTCTTCAACTGCCT CGGCTGCCTCTGCTACGAGTACGATCACATCGTCCCCTTTTCCAAAGGTTCCATTTTTCTCCTACCCTTTTCCCTTAATC TTATTATTAAACCTTTAACCTCTTCTGGGTCTTTCCAATTTTCTATTTTTTGGATGATTCCTTAATGTTATCACTGTTTT CCTTGGCAAAAATGGGTGCTTCTTCAGGTCCATTAGTGTCTATAGTTTTGTTTGACATCAGATTTTGGATAAAAAGGAGA ACACTGGAAATGTGTAGTGTAGAAATGTAACTGAGGATAGAGTTAAGTGCTAGTGAAAATGAAATATGATTTCAGCTTTT TGAATTGATTTGGATAAACAGAAAACCAGTAATTTAAGTGATTAGTAATAGTCTAATAGAGTATTCCAGATGAAAAATGA AGATACTTGATGAGATTATGAACTTGTGTTTTTGGTTTTTACTTTCAAGGTTTATCATCAATTGAGTGTACAATGCTGAA TGATATTTGCTGGATTAATAGTTAGCTTATTTGACATGTGAGGTTGTGTTGTAGGTGGTGAGTCCACGGCGGAAAATTGC CAAATACTTCAATCAAGAGTGAACAGATTTAAATCGGATAAATCTCAGATTGATTCGGAGGAATTGAAGGGGTACTCTTG TGATGTTAATTTCACTGGTATGTATGCTTCTTTATTTTCCTTTCTTTACCTTCAACTTGCCCTTTCAGTTTCACCTATTA TTATGCATTTTACCCATGCTCGGCTTTAGGGAGTCCTTTATTGAACTTTGTTCATTATAGGGAAACAAAATGTTAGTATC AGAAGTAGAACTTCTCTTCATAAGATTAGAACCTCAAGCACTTAGTCCGAGAACCCTAAATCCTAAATGTTATAGACAAT TATCATTGTTTATTTCAATTCCCAGATTTTGCTCTTTAGGTTGTATCATTGGAGAGCAGCTGCAAAAAATAAAAATAGAA TTTATGTATGTCTTTGTTTCTCGGATTGGATGGATTTACTAAATGCTTTACGGTTGGCACATTCATATACCTTGAACTGC AGTTTCAGATGCTTTCACTTGCATTCTAGAAATACTCTAGCTAGTTGCTCCTTTTCTCTTTTTTGAGTTTCCCATAGATT ACAAGGATTATGAATTGTAGACAGCTCCACCTTTGGAAATAAATTGATATATCTACTGCATTTATCTGTTTTTCTTGGTT TCATGTGCTGCATGTGGATCTGGCCATGGATGGATGTTAACTTCTGGCCAGGAATGCTATCTATGGAGCTAAAGCTTCAT TATATTTGGGTCCATAAAAAACATGTATTTTTAGTTATTGTAAATTGCTGACCCTGATGTGAGGACCTCAAAATTAGTTG GCATATATTTTTTAGATGGATCTTAAGGGAATTGATTAGCATCCACTATACTAGGATGGCAAGTTTGTTCACTGTGTCAT GTTAGAAGAAATTGTATGTAAAACTCGGGATCTTGTTCTGTTAGATGCTGAGAGGTGACTCATTGTTGACTTGTTTGAGT TATATATTTTCTGAACAATTATTAGGTTTATTGTTGTCCAAGGAAACCTTGAGTGCGCAAATTTCTACCAATTCATGAGC ACTATCATGTTTAGATCTAATCTTATAGTTTTGATCAATCCGCAGATAAGGAGCTCGATGTTATTGAGATGGCTGTTTAT GGCGATGTAATTCGACCAGGAAACCAGTGTCGTTGCAGGACGGTTGCTGAAATGCTTGGCAAATACAAGCTTAAAGACAA GACAGATGCGTGCAAGTTACCATAGGAAGATGAATCTTTGGTACAACAAACATTCTTTCAAGATACATTTATAATGTATT AAAGACAGATAGATACATGTACAATAGTGATTTTTCTGATACTCATTTTAACATGTACCCATAATTTAATAGTCGTACTT TTAAGCCTTAAAAAGCAAAGGAAAACAGTGATGTAGACTATTCTATCAAGATTAGAAATGACAATAGGGAGGAATGAGGA AGTTTAGATTATACAGAAGTAAACTTTTATATATTAGATAGAATTGAACAAAAATAGATAATACATGGTAAGAAAAAATG AAATTCTTCTGGAAGGCCTTCTGGTTTCTATAAATAGAAAGCTGACAGGCCTACACTCCTCAAATTGTTGGGTTTCCAAG CTTCTAGGTGACAGCTCATGTTGCTGGACACACTGCACATTCTGATGCCCATTTGTTGTTCACAGTCTCAGCAGTGAGCT TGGAGAATGGAGATGGCCCTCACAAGGACACTTTGATCCGAGATTTGAAAATCTCTATTCTTACATGAATAAATACTACT AGCATAGTTGGATCAGTTTCTCTTTCATCAAAATCAATTCTGAAACCCAGAAGCTTTTCACATAAGCTTCTCCTCAGAAT TGATTTTGACTTCAAAATCAATAGTAGAAGAGTTTTCAAACATGTGCTACATTTGCAGTTGCTTCCCGTGCTTCTTACCT GTAGTCCAGGGATCAAACGTTAAAAGGAAATGACATGCTAACAATCGTATGGAAACAATCTTGTTAATATTACTGCCATA TACCTTTTTGAAACCATGATCTTCGGACAGTACGGCGAATGTGACGCTCATGTCTTTCTAAGAGCTCATCAACTGTATGC ATTTGAGATAGAAGGGGTCCTGAAAATTCAACTTTCTCCCCTTGATCCTGATAACTCTGAAAGGAGGGAAATAAATAAGA ATCATGTCTAGGCAAGGAAGCATATATTGCTAAACCTTCAATGTATGATCCATTTATGATAAGTTAACAATGATAGATAT GCCACAACTTTTTCAACATATATATCTTTACAAATGAGTGACTTGCCTCTGCTATTGGCCTCAACCTTTAACATAACAAA CATTAAGAAATCAATTAATTTATCTGAGAGGAGATAGTTAATTGAATTATCATCTAAGGAAGAAATTGCACTTTTTCAGA ATTCACTTGTCTCTCACAAAGTCAAAATCAATATTTCAACAAAATTTATCTTATTTCCATTTTAAAGTTAAAATTACTTA TATATAACAAGTTCACATTTCAAAAAGCTTCTTATATCAATCTCCATATATGAAAACAGAACAGAACAAGAAGTAGTAAG AGGCACATAACAAACACAACATCAATCAATCTGTCAAACTTATAAACTTACCAGGTTACTTCTCTTGGACAGTGAATCTT CTCTATGATAAAGCACCTTTGACAGTTCTTGTGAATGGTACTCATCAGAAGTATCAAATGAATCCGGACGATCAAACTTA CTCCATTGATTTTGCATTACAAGCTTTGAAATCTCAAGCAGATCATGGCCCCTTGTGTTTGTGAGTCCCCCCAAAATTTC CTTGTTTTCATAGTTTCTTGAGTCAGAATTATTCCTTGAATTTAGTGCAGAATTTTCTAATAAATTAAATATATGTCCTT TAGAAATAGATCGACTGTGGGATCTAATTGAAGCGTCTTCTTTACGCCTTTTCGCCCATGCAAACCCGCTTGATCTTGAA ACCTGTAATGGTCCTGGAAAGGGAATGTCTACTTGAGATGCACTCTTCATCTGGGAAGCATCTTCTGGTTTATCACTTGA TGTCTTTGGCGCCTCCTCACCTATGTTAGTGGTCTCTTCTTTATGGACATGCACCGATCTGTCATCCATCTGTAGCGAAG TTTGCATTTGAGTTGCCAAACCCTGTATGTGAAGAATGAGGTGTTAGATGAGAATAAAATTCCAGTAACTAACCCAATGC AGCAAATAAATTAGAAGAAACACAATGATGCAAGAAGAAAAGAAGAAAAGAAGTAAGACAGACCTCTGGTGGGGCTAATT TACTCAGTGCTAGTGGCTTTCTTGATTGTTTTCTTGTTTCAGGTCCACAAACTCTACCACTAATCTTTTTCCTGTAAGTT CAGAACCATATATGATAATGATTACATTAAAAGACAAGTAATAACTGCAAAAAAT
CDS sequence (LotjaGi4g1v0251700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCCTCGCCTCACCGTCCTCGCGGCGACGGCAACGGCGAGAACAGGCCGAGATCCTTCGACTCAAAGACGAAGAC CATCTGTTGGACGAAGGCGGATGTTGTCCCCGGCCGTCACCCTGACCGGTGGCGCAAAGACGCCGCCGGCAACATTGTCT GCAAGCGTTTCTTCAACTGCCTCGGCTGCCTCTGCTACGAGTACGATCACATCGTCCCCTTTTCCAAAGGTGGTGAGTCC ACGGCGGAAAATTGCCAAATACTTCAATCAAGAGTGAACAGATTTAAATCGGATAAATCTCAGATTGATTCGGAGGAATT GAAGGGGTACTCTTGTGATGTTAATTTCACTGATAAGGAGCTCGATGTTATTGAGATGGCTGTTTATGGCGATGTAATTC GACCAGGAAACCAGTGTCGTTGCAGGACGGTTGCTGAAATGCTTGGCAAATACAAGCTTAAAGACAAGACAGATGCGTGC AAGTTACCATAG
Protein sequence (LotjaGi4g1v0251700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSPHRPRGDGNGENRPRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCLGCLCYEYDHIVPFSKGGES TAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTDKELDVIEMAVYGDVIRPGNQCRCRTVAEMLGKYKLKDKTDAC KLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 163 | 163 | 6.8E-85 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 163 | 163 | 6.8E-85 | – | |
| Gene3D | 30 | 123 | 94 | 8.7E-7 | – | |
| CDD | 55 | 94 | 40 | 1.5015E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0251700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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