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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0253300 |
| Transcript ID | LotjaGi4g1v0253300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT1G26610.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9SHD0|ZAT4_ARATH Zinc finger protein ZAT4; TrEMBL-Plants: tr|V7CAP0|V7CAP0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0253300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60711913..60714631) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCCCTCACTTTACCACTCCCTCCTCTTTTTTATCTTTGCTTCCATGCATGGATTTCTCCTCCAAATACACTCAACT TGATATAGAGAGAGAGAGAGAGAGTGAGAAGAGAGAAATCAACGCTCTCTAACTCTCTTCTTATTTTCTATTCTCTCTTG CGTTTGTTCATGCCATCATTAGCAACAAAGGTAACACAAACACAACTCTTCAAGCTTTGATATTTTTCTTCTTCCAAACT CAACTACCAAAGAAGCTAGTAGTAACCAACCATATCTTTACTTTGCTTTGCTTTGCTTCACTACTCATTCTCTTCACCAC TCTTCTTTCCCCTGTTTTTCTGCCTTAGATCTTGCACTTAGCTTCCAATTTCGTTCAAACTCATTGCAACTTTCACTTTT TCTCTCTGAAATCACTGCAACAAGTGATGTGATGCAATTTTCTCGTGGAATTCAGGATTAACCGATCTGGGTTCGTGACA ACTTTTCTTCTTTTTCATTCTTCCTCTGTGATCCTCTGTTCCCGGGTACTCACAATTTTGCATTCTTGAGTGATGAGATT GATGAATTCAGCATTCTTGGACATTCTCTGATTCGTTTTCTGATCTGCGTTCTGTAATTTCTCTTCAGTTTTCTTGAATT CAATGGAAGAAGAACAAGAATTCAAGCATGTTTGCAAGTTCTGCAGCAAGAGCTTCCCCTGTGGTAGATCCTTGGGGGGT CACATGAGGTCTCATGTCACCAACTTGTCTTCTAAGACAGAGGAGAAAGGAAAGAAGGTTTTGTCTCAGAACAATGGTGG AGATTGCAACACTGGTTATGGTCTCAGGGAGAATCCAAAGAAGACTTGGAGATTTGCAGATTCAAGTGAAGAAGACACTT CAATTATGGTGATCACTGACAAGTTCTGCAAGGAGTGTGGCAAAGGTTTCCAATCTTGGAAGGCCTTGTTTGGCCACATG AAATCCCACTTTGAGAAACAAAGAGTAGTTTCAAATTCTACTAGCTTGGAGGATCAAGATTCATGGACTAATAGTAATAA TGCTATTGCTAATGCTACTACCACCCAGAAGTTGATCATGGATTCTCAATCTGACAATGAAATCACTGCTCCAAAACGAA AGAGAAGGTCAGAGAGAAGAACAAGGTACACAGGTTCTGCTTCTGCTGCTGCAACTTCTTCTGTTTCCTTTGCCAATCCT GGTTCTTCTTCTATTTCTGATGTTGAACATGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAAAGATTTGAG TCCTTGGAGTGGTCTTCATTCTCGTGCTGAATCCTCTGACAACAACTCTGCTAACTTCGAAGCTCCTCGATCCTCGGTTC GAACTAATCTAGTTACTAGAATTGAAGGAAACAAGAAGTGGGAGTTTGCGAATTCAATTCCTGCAAATTTCAAGTCTAAA GGGAAAAGTTCAGAGCTTTTGTCCACTGAGTCTCCTGAAAATGAGTTCAAAATGAAGAGAAGTGGAGTTTCCCTTAAAGA GTTCATCAAGAATGGAAAATCTAACAGCAAGTCTGAGCTTGATTTTGAAGGTGAACAGGGGAAAAACAGAGTCAATGGAA CAGAGTCAGTTTTATCAAAATACAGTTCAATCAAGACCAAGTTTCTGGATGCTGAATTGGAGTCAAATTCCTTGAAGAAT CGTGTGAAAAGGCCTTTGGAATGTGAATTCAGCAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACTACTTGCAACAA AATCTTCCACTCCTACCAAGCTCTTGGTGGCCACAGAGCTAGTCACAAGAAGAACAACAAAGGGTGCTTTGCTTCAAAAA ATGAGAGCAGTGAAAACAGCATTGAAACTGAGCCAAAAACTGAAATCAAGCTCAAGAAGAGCAGTGGAAATGAACATGTT GAACATGAACTTGGTGCTGGTCTTAGCAATGAGGTAGAAAGAGTGAAAGAGTCCAAGAAGAACAAAGGTCATGAGTGTCC AATTTGCCTTAAGGTTTTCCAATCTGGACAAGCCTTAGGTGGCCATAAGAGATCTCATTTGTCTGGTAAGTCTGAGATTA GAAACTTTCAACCACTTGCTGTAGTTCAAAAACCAGTGCCAGAAATAAGGGACTTCCTTGATCTTAATCTTCCAGCTTCT ACAGAGGAAGAAAGCACTAGTTATGCTGATTCTAGCAGGCCCTGGTGGGTAGTAGACTAGAAGGCAACCATAGTAGTTCT GCAGTTCATAGTGTTCTCCTTCAGTAGTTCAACTTCAGAGTGAAGATTCAGCAGGTGTTCGAAAATACTTCTACAATTAA TTCTGCAGTCAATTATCGGAAAAAAACTTCTTTGAGCAGCTTCCGTGTGTCGGAGTTAATTCTGGTGAAAGAGAAGTCAA TTCAAACATGCTATCAAACTGTATAGAAATATTTCTGCATTTATTCCATTGATTCTTTACAAGATTCATATCTTGCTAGG TACTTCTTATATGTTGTTAAGATTTTTTTTTTTCAAGTAGTTCATGAGTTGAACTTTGCATCTGTGTTCTAATTTCTTTT TGGATTCTACATGTCATTAGTCATTACTGGTGTTCATAGAATAAGTTCAATATCTGCATAGTTTAAGCTCATGGTTTTCT CTTCTAAACTCCAGTTATTATGAATATTTTCTGCTGTTATGTGTGTTTTAATACCTTCATAGAATAAGTTCAATATCTG
CDS sequence (LotjaGi4g1v0253300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGAACAAGAATTCAAGCATGTTTGCAAGTTCTGCAGCAAGAGCTTCCCCTGTGGTAGATCCTTGGGGGGTCA CATGAGGTCTCATGTCACCAACTTGTCTTCTAAGACAGAGGAGAAAGGAAAGAAGGTTTTGTCTCAGAACAATGGTGGAG ATTGCAACACTGGTTATGGTCTCAGGGAGAATCCAAAGAAGACTTGGAGATTTGCAGATTCAAGTGAAGAAGACACTTCA ATTATGGTGATCACTGACAAGTTCTGCAAGGAGTGTGGCAAAGGTTTCCAATCTTGGAAGGCCTTGTTTGGCCACATGAA ATCCCACTTTGAGAAACAAAGAGTAGTTTCAAATTCTACTAGCTTGGAGGATCAAGATTCATGGACTAATAGTAATAATG CTATTGCTAATGCTACTACCACCCAGAAGTTGATCATGGATTCTCAATCTGACAATGAAATCACTGCTCCAAAACGAAAG AGAAGGTCAGAGAGAAGAACAAGGTACACAGGTTCTGCTTCTGCTGCTGCAACTTCTTCTGTTTCCTTTGCCAATCCTGG TTCTTCTTCTATTTCTGATGTTGAACATGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAAAGATTTGAGTC CTTGGAGTGGTCTTCATTCTCGTGCTGAATCCTCTGACAACAACTCTGCTAACTTCGAAGCTCCTCGATCCTCGGTTCGA ACTAATCTAGTTACTAGAATTGAAGGAAACAAGAAGTGGGAGTTTGCGAATTCAATTCCTGCAAATTTCAAGTCTAAAGG GAAAAGTTCAGAGCTTTTGTCCACTGAGTCTCCTGAAAATGAGTTCAAAATGAAGAGAAGTGGAGTTTCCCTTAAAGAGT TCATCAAGAATGGAAAATCTAACAGCAAGTCTGAGCTTGATTTTGAAGGTGAACAGGGGAAAAACAGAGTCAATGGAACA GAGTCAGTTTTATCAAAATACAGTTCAATCAAGACCAAGTTTCTGGATGCTGAATTGGAGTCAAATTCCTTGAAGAATCG TGTGAAAAGGCCTTTGGAATGTGAATTCAGCAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACTACTTGCAACAAAA TCTTCCACTCCTACCAAGCTCTTGGTGGCCACAGAGCTAGTCACAAGAAGAACAACAAAGGGTGCTTTGCTTCAAAAAAT GAGAGCAGTGAAAACAGCATTGAAACTGAGCCAAAAACTGAAATCAAGCTCAAGAAGAGCAGTGGAAATGAACATGTTGA ACATGAACTTGGTGCTGGTCTTAGCAATGAGGTAGAAAGAGTGAAAGAGTCCAAGAAGAACAAAGGTCATGAGTGTCCAA TTTGCCTTAAGGTTTTCCAATCTGGACAAGCCTTAGGTGGCCATAAGAGATCTCATTTGTCTGGTAAGTCTGAGATTAGA AACTTTCAACCACTTGCTGTAGTTCAAAAACCAGTGCCAGAAATAAGGGACTTCCTTGATCTTAATCTTCCAGCTTCTAC AGAGGAAGAAAGCACTAGTTATGCTGATTCTAGCAGGCCCTGGTGGGTAGTAGACTAG
Protein sequence (LotjaGi4g1v0253300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEQEFKHVCKFCSKSFPCGRSLGGHMRSHVTNLSSKTEEKGKKVLSQNNGGDCNTGYGLRENPKKTWRFADSSEEDTS IMVITDKFCKECGKGFQSWKALFGHMKSHFEKQRVVSNSTSLEDQDSWTNSNNAIANATTTQKLIMDSQSDNEITAPKRK RRSERRTRYTGSASAAATSSVSFANPGSSSISDVEHEQEEVAMSLMMLSKDLSPWSGLHSRAESSDNNSANFEAPRSSVR TNLVTRIEGNKKWEFANSIPANFKSKGKSSELLSTESPENEFKMKRSGVSLKEFIKNGKSNSKSELDFEGEQGKNRVNGT ESVLSKYSSIKTKFLDAELESNSLKNRVKRPLECEFSKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKNNKGCFASKN ESSENSIETEPKTEIKLKKSSGNEHVEHELGAGLSNEVERVKESKKNKGHECPICLKVFQSGQALGGHKRSHLSGKSEIR NFQPLAVVQKPVPEIRDFLDLNLPASTEEESTSYADSSRPWWVVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 523 | 523 | 2.8E-145 | – | |
| SUPERFAMILY | 6 | 33 | 28 | 3.2E-5 | ||
| Pfam | 9 | 31 | 23 | 1.1E-5 | – | |
| ProSiteProfiles | 9 | 31 | 23 | 9.307 | ||
| SMART | 9 | 31 | 23 | 0.15 | ||
| ProSitePatterns | 11 | 31 | 21 | - | ||
| SMART | 87 | 109 | 23 | 0.016 | ||
| ProSiteProfiles | 87 | 114 | 28 | 10.138 | ||
| SUPERFAMILY | 88 | 388 | 301 | 6.53E-8 | ||
| ProSitePatterns | 89 | 109 | 21 | - | ||
| Pfam | 89 | 109 | 21 | 7.9E-7 | – | |
| MobiDBLite | 146 | 195 | 50 | - | – | |
| MobiDBLite | 169 | 192 | 24 | - | – | |
| MobiDBLite | 215 | 234 | 20 | - | – | |
| MobiDBLite | 218 | 234 | 17 | - | – | |
| Pfam | 366 | 390 | 25 | 1.5E-10 | – | |
| ProSiteProfiles | 366 | 393 | 28 | 9.91 | ||
| SMART | 366 | 388 | 23 | 0.14 | ||
| ProSitePatterns | 368 | 388 | 21 | - | ||
| ProSiteProfiles | 450 | 477 | 28 | 10.118 | ||
| Pfam | 450 | 474 | 25 | 3.6E-12 | – | |
| SMART | 450 | 472 | 23 | 0.16 | ||
| ProSitePatterns | 452 | 472 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0253300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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