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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0255400 |
| Transcript ID | LotjaGi4g1v0255400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ninja-family protein; TAIR: AT3G29575.1 ABI five binding protein 3; Swiss-Prot: sp|Q94F39|AFP3_ARATH Ninja-family protein AFP3; TrEMBL-Plants: tr|A0A0S3R776|A0A0S3R776_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0255400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60920892..60925509) extracted from Lotus japonicus Gifu genome v1.2.
TTATCATCTTCTCACTTCTCAATCACCTTCTATATGCATGGTCCACTTCTTTATCTCTTGTTCTCTTCAAACTCAGTCAT ATGTTTCTCTTCCTACAACAGTGCCAAATTTTTGATGTGACATTTGGCTTGGTCCACCAAAGTTGGAGTATACTTGCACT TCAAATAATTTCGTTATATATATTCGTCTACTCTACTGTATATGTAGAATGTAGTTGATAGAGATAAATAATCCCCATTA TTCTTCTTCCTTTAATTTTGAGAGGGAGTAGCTGCAATTTTCATTCTCAGAGGAAGACATTCTTCAAGGGACTTTGTTCT GCTCAAGAATTTCACCTTTCTCTTGATTTCAATGGAGGTAACAACCTAATAAAGAAAAATGCTGATGAATTCAACTCCTT CACTTACCACAGAGTTTTATTTTTTGCAGCACCGATTTTTTACTGAGGAACCTAACAGCACCAACTATGAGCAGATAGAC CTCACTCTGAGGCTGTCTCCATATGGCTCTGTTCCAGCAGCAGAGGGTGAGAAGGGTCTGGTGAGATTTGGGGACTTGCA GACAATGAGAAGAGTGAGAAGTGGGAAGAGACTGGTGCTGGAGAAGCAGCGAAGAGAGTATGAACTCAAGATGGCATGGC ATAACTTAAGTAACTTCTTTTCTCCTGTTTTTTGCTTCTGTTCTCTTCTTTCTCAGTTACATTTATTTGTGCTTCTTTTG ACATTCATGCAGCTGGGTTAGTTAAGAATTCCTTGACTTCTTAGGCATGAACAAAAAAGATTTTTGTCTTCGATTCGAGT ATCTCACCTCTCACTTCTTTGAAGCCAAAACTAGTCTCGTTTGGAGAATCATGACAGTTTTTACTTTAACGGAAATCTAA CTTGTCTACGGCTAGACCAACCTTATTGGTAATCATGAACAATTATATTGATTAATTAAAAAATTAATAATTAAGGAGTA TTGTGTCTAGGCTGCCCAACCATCTTCTGGGGGCTTTTAACCACCACTAACTATCATCATTGTACATATGTCAAAATGTA ACTAGTGACGGTCAATAACCCCATTAACTGAAAATTGGCCCTCAAGAAAAAAAGTGTGCATCAGCTGCCACATCATGACC TTAAATGTGCACAGTAGGATGTCACATAACTAAAATTGATGATGTGTCAATGCTGAAATGTTTTTTTTTATAGGCAATAT AAAATATATTGAATGGAAGTACAAGGGGTACTTCAACCCAATACAAAAGAAGAGAGTAGATAAAATTACAAGATAAAAGC AGCAAAAGACTGTAAAGAAATAAACTTAAGCTAACCCACCCCCAACCCCTCCAAGGAAGAGAGACCTTAGAAAGAGGCCT CATTAAAACCTTACTAGGAAAAACCCCCTTAGGAAAACCTAGTGAAGGAAAAAGAGTACCTCTTACTAAGATCAAAACGA CACTTCCAAGGAGTAAATACCAACATAAATGAGTATATCATTAACACACCAGCTGCTCCTAATTCTTTCCAACACTGCTA TATAGAGGTAAACATCAAATCCTTCTAACCAAGTTCTACACAGTATCAGCAAGCTCCAGGAACTTCAGATGAAATACCAA ACTCAACTACCACGGCCAAGCCATGATATTGTATAACATTGCACTACCAAAGCTTTAAAATGGTCCCATCAATTCCACCA AGACCCTGTCAATATAGCGTGAATAACAGCCCATGGAATAAGTCTACAAGATTTGCAACATAAATACCAAGGACCTCTAA TCCATCAAAAATACGTGAATAACCAGCCACTCAGTCACACAATAGCAAACCAGTTCAATTTTCCATCAACATCAGTAACC TGCAAGGTGAATTAAGGCAAGCATTGCATTGGTTCATTGCACCATTCATAATAGGAATACTTAAAATCCTTCTGTCTAGC CCGGAGCCAATTCCAAGCTTTTAATTTAATTTTGTCCACCAAAACTGGACTTTCAACAGCCTCCCCTCTAAATAATAATC CATTTCTTCCATTCCAAAGCACCATGACAGTAGCTAGCCAAACTGAGGAAAATCCTCCTCTTTTCAACACTGTGCAGCTC TCCACAAATTGCAGAAAGTGGTTACAGGGATCATCAGTAAGCACCAAGCACAGGTTAAGCCACATTAGTACCTTAGCCCA CACCTTCCAAGCAAAGGCACAGTCAATGCTGAAATGTGTTTCTCTTAGCTATATCAACTTTTTATGGAATGAGAGTCAAC AATAGGGACCAAAGTCATCCTATTATCAAAAGACGGTGATCAAATTGAGGCGTACTGAAAATTATATTTAAGTCTAAAAT CATTAGAATCTTAACAGTAAAGTTTTAAAATAGGCAAACTTTTCAATTTTGTTTGCTCACAGCGGGTTATAATACTGTTT TACAAGTACCCAATCAACGAATGTCAAGTGTCAAATTGTGCTATGTCATTCTAACTTATAAAATTCCTAATTTGATCCTC CAACTACTTTTATTATAAATTTTACCATATACTAAAAATACAATTATTTTTCAGAAAATGTTTATTTTCTGATTTTCAAA TTGATTTTAACCTTTATTGAAGTTAATTGTAAACCTTTAAGTTGATTTGGGGCAAATTAACCAAATTTTCCTCCTCTCCT TCTATGTACATTTCATCTTCTTCTTTGTTGTGTTCATCATGCCGTTGTGGTCTGCCTCTTACTCCGGAATGAGAAACATA CAACTCTGCTATATATATATATATATATGATGACGCATAAAACCTTTTGATAGTTGTGTTTTGGCAAAAGCCAATATGAA AGTGGCTTTATTTTGCAGAGATTATCACGAGACAAGACATGATTTTATGAATCTACAATTAACACTTCAGACATGAAATC AACTAGCAGCAACCGCTTGATTTCACACTCAAAAACTATGTATTTGATTTTGTTTGATTCCAATCTTTTACAAATGTCTA GGTTTTTATTTATTACAAATAAGTTCTTCTATTTGGTTCTGTCAAAAAAAAAAAGTTCTTCTATTTGTTTTATGTTCAAT TCGCTGATTGAATTTTAGCCTTGGAGAAAGAATATAATTAAGCTACTTTTATTCCTCACTTTTTTTTGTTCTTGTTTCCA TACGTCTCTATAAGATAGGTGTTTGATTAATCTCTTGGATTAGGCAACCAAATTAGGATAGAGCCAAATGTATTTTCCCA GTACCTGTAATTATGTAAATTTAGAGTTCAAATATAAGATAACATGCTTATGAGATCAAAATCTTTGGGGTTTATGAATT CTTTTTTTAATTATGGTTGAGTGTTTCTCAGATCTTATTTTAGGTTTAGTTTGGTTTTTTAATTTCAAAAATAATTAAAA AATATAAATAGTTGGGGGATAAAATGTAAAATACAAGAAGTTTAGGGACTCAAATTTAGAACATAAAACTTGTTGGTCAA ACTGATGACATGGCAGCATAGTTCATTAGGCATATTTCTATTGGTCACTAAGTGGGGGGCATGACTGCTGTTTAAAACAC AACCAACATTATTCAGTTTGCCTTTAAAATATTCTATATAATTCTCTCAAATTCTTCTAAAATGAACATCTCATTATTGG CAAGTATAATTGTCCACAATACAGTAATTAAAGCTAAGCATGTGTTACTAGCTTGTTAAATCCATTCAAGTAAGTTTAAC TTGGAAATTACTTGCATTTGGAATTGACAGATATGTCATTGTTGCACATAAGCTCTGACGTTTTAATCTTTGCTTATATT GAAGAAGGAGCTAGCTCTAGCATCCAAACATCACCTAAGGAGGAATATAATCCCATGGTTACCCCAAAAGAATCAATGCT TCTGGAGAGACTTGAGCATGTGAATCCTCGTCTTGAGGGTGATGATGCAATGGACATTCTGAGACAAATGCCTAGAGTGA CCACTACTGGAGATGGCCCTAATGGGAAGAGAATCGAAGGACTTCTTCACAAGTATAAGGGAGGTCAAGTTTGTATTGTG TGTGTCTGTCATGGTAGCTTCCTCTCTCCCACTGAATTTGTGATGCATGCTGGAGGAAAGGAAGTGGCTAATCCCATGAC ACACATCACTGTTTGTTCTGATTCCTTTTGTATCATTTGACAATGTGGTGTTTTTCTTATCCTAAGATGTAATGCATGTT AAATATCAGCTATTATAATTTTGCCCCATGTAGCACAATAATTTGAAATTTGTACTATAAAACATATTTTCTGTTTGCCT TGAGGAGACACAGTTAAACAAGAACTTTCATATTGTGTATAATAAGCACTTTCGTCACATCACAAACACAATTGTCTAAC ATCTCATATTCTATCGCACGGTAGAAATTATCCTTAGCAAAAACCTTGAAACATGATCATGTTTTTTTCTATTTATCTCC ATGACTTTGGCCTAAAATTGAAAAAAAATAATATTTGAAAGAGCCTAAAATTGAAATTGATATCAAGAAATTTTTATTGA TTTCATGGAGGGCATAACGCTGCATCTGTACCGCTCTTTAGTCCTTATCCAACGGCTGCCACGGGTGGGGAGAAAGTACG CCCCTCGGATCGCCAGCGTAGCCCTATTATCCTTCCAAATGGGCCAACAATCCCTCCG
CDS sequence (LotjaGi4g1v0255400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCACCGATTTTTTACTGAGGAACCTAACAGCACCAACTATGAGCAGATAGACCTCACTCTGAGGCTGTCTCCATA TGGCTCTGTTCCAGCAGCAGAGGGTGAGAAGGGTCTGGTGAGATTTGGGGACTTGCAGACAATGAGAAGAGTGAGAAGTG GGAAGAGACTGGTGCTGGAGAAGCAGCGAAGAGAGTATGAACTCAAGATGGCATGGCATAACTTAAAAGGAGCTAGCTCT AGCATCCAAACATCACCTAAGGAGGAATATAATCCCATGGTTACCCCAAAAGAATCAATGCTTCTGGAGAGACTTGAGCA TGTGAATCCTCGTCTTGAGGGTGATGATGCAATGGACATTCTGAGACAAATGCCTAGAGTGACCACTACTGGAGATGGCC CTAATGGGAAGAGAATCGAAGGACTTCTTCACAAGTATAAGGGAGGTCAAGTTTGTATTGTGTGTGTCTGTCATGGTAGC TTCCTCTCTCCCACTGAATTTGTGATGCATGCTGGAGGAAAGGAAGTGGCTAATCCCATGACACACATCACTGTTTGTTC TGATTCCTTTTGTATCATTTGA
Protein sequence (LotjaGi4g1v0255400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHRFFTEEPNSTNYEQIDLTLRLSPYGSVPAAEGEKGLVRFGDLQTMRRVRSGKRLVLEKQRREYELKMAWHNLKGASS SIQTSPKEEYNPMVTPKESMLLERLEHVNPRLEGDDAMDILRQMPRVTTTGDGPNGKRIEGLLHKYKGGQVCIVCVCHGS FLSPTEFVMHAGGKEVANPMTHITVCSDSFCII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 109 | 191 | 83 | 5.1E-59 | – | |
| PANTHER | 109 | 191 | 83 | 5.1E-59 | ||
| Pfam | 148 | 184 | 37 | 1.5E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi4g1v0255400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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