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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0255700 |
Transcript ID | LotjaGi4g1v0255700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | TCP family transcription factor; TAIR: AT5G60970.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5; Swiss-Prot: sp|Q9FME3|TCP5_ARATH Transcription factor TCP5; TrEMBL-Plants: tr|A0A1J7I3A7|A0A1J7I3A7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0255700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60957732..60959981) extracted from Lotus japonicus Gifu genome v1.2.
TATTTCCTTACAAATTTTCTTAATTGAGAACTCTAAGCTAAATATATATTCCTTTGCAGGAAAAGCTTGAAGTCGAAAGA ACTTGAGGTCTCATCTGCTCTACTAACTAGCACTGAGTTTGCTCATTTGGGAAAAAATTGTATTGTGTTTCTTCTTCTGT TCTCTCTTCCCTATCTCTTTCAAGCTTGGAATAGTTGGCACAAACCCAGAAAACTTTTTTTCTCCCTCATGTAAGTAGGT CTTGTAATCTAACTAGCTACTAACATGAACCTTGTGCTCATGCTTTATCAGTGAATTCCTCTTTATATATATGCATAATT TTGTACCAATATCATGCTTTCCTTCTATTTGGTTTCATAATTACCAATTCAGTGAATAGAATAGTCTTTGCCCTAATTCT GAAGAAACATAAATTGGCATGTAGAATTGGGAAAACTGTTTTCAGAGTCCATTCTGAACATTTTGATATCATCTATTACT CGGTACATGTTTAGAAACCCTTCTGCAATTTATTCTAAAGCAAAAACTAGTTTTTGAGTAGTTTCTGAGTTTTAGAATTA ATTAATTCCGATGAAAGAGAAGTTGATTTAAACAAGACAAACAACTGGAAATGGAAACAATTCTTGGTCAAGTTTGCAAC AATTTTAGCATGATTTTGCTGTCAATATTTAAACAATGAAGAACTGTACAATAATATCACAAAAAGTTAAGGTTTCTGAA GGGCAATTCTACTGGTCCACCGATGAACCATATTTTTACTACTAACTAGTGAGCTGGAATTTTCTTGGTCAGCATTAGAC AAAGCCATTTCTGAAACATACCACCAGATATAACTCTTTTGACTTCATTGTTTTTCAGAAGGGTGGAATGCAGTGCAGGA GGAAAAGGTTCTATTGATGATATAAAACAAGATCAAGATGACTGAAAATTCAAGCAAAGGCTATGATCAAATGAAGCAAG AGGGTACTAATGAGGTTAAAACTGAGAGATTGATCTCCTCCAATAAGGCACTCTCTACCTCAAGACAATGGACAGCATTC AGGAACCCAAGAATTGTGAGAGTGTCACGGGCCTTGGGAGGAAAAGACAGGCACAGCAAGGTTTGCACCGTTAGAGGACT CCGCGACCGTCGGATCAGGCTTTCTGTGCCCACAGCAATTGAGTTATATGATCTTCAGGACAGGCTTGGGCTCAGCCAAC CCAGCAAGGTTGTAGATTGGTTGCTTGAAGCCTCCAAAACTGACATTGATAAGCTTCCACCACTTCAAATCCCTAACTGC AGCTTTTCTCAATTTCATCATCAAGATCAATATTCAGGTAATGATAGGCTTTCTCTTGGAGTTGGAGGCTTGTTCTATGA TGGTACTAGTGCTTCCAGTCAAAGCCTCATGGCAAAGTCAAGGTATAATTGGGATGTTGATTTAGTGTCAAGGCTAAAGG GTAAGGAAGATGAAAGTGAGAAAGGTAAGTGCTTGATGAAAGAAACTCAAGACTCAGCTCAGAAGCTCTTTCCTATTGGG ATTAATTATAACTCTTCTTCTTCTTTACCTGGTTTTCTAAACAATGCCATGACATATAATATTAACTCCTTCCAATCAGA GCCTTCTTCAAGTCTATCTTTATCACAATTTGGAAGCCATGGAGTGTTGTTTCCTTACCTGCAGCCAGATTCTAATTCCA TGTTGCAATATCCAAGCAACAACAATGGCAGTGTTGTGCCCTTCTCATCCTCTTTGTCTGCTTCACAGTTACTTTTCTGT CCTTCTTCTTCTGCTACTACACCAACATCACTTTTTGGCAATCCGCATGCTCCACTTATGACAAACTCATCAGCGGAAAG TAGTGATCCAAGACAATACAATTCCAACCATGTGCACACCTTGAGCTCAGGTTCCTCACTCATGCCTCATCCTTTCATGC CATCTCTTCACCCATTCAGCAATTCACCTTTGAGTCGACGCCTTCCAACGCCATTTAGTTCCAAGCTTCTTGATTCAGAT AATAACTAACAATCATGACACCAGATATGTTTGTGAAGCTCCATTGTTGTAAGCCTTATCATCATATTATGTAAAGGATG TGAACAACGCTTAATAGGTAAAGGTGAATTTCTTTGTAAGCATGGCGCAATGCTATACATATAGAATATTTATGTTGAAC GAATCCTTGTGGTTGCTGCTATAGAGACCTTGTTGGCAAAGTGAGGTAGAATAAATCAATCTGAAATAGTTTTCATGTGA CATTAAGTGT
CDS sequence (LotjaGi4g1v0255700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGAAAATTCAAGCAAAGGCTATGATCAAATGAAGCAAGAGGGTACTAATGAGGTTAAAACTGAGAGATTGATCTC CTCCAATAAGGCACTCTCTACCTCAAGACAATGGACAGCATTCAGGAACCCAAGAATTGTGAGAGTGTCACGGGCCTTGG GAGGAAAAGACAGGCACAGCAAGGTTTGCACCGTTAGAGGACTCCGCGACCGTCGGATCAGGCTTTCTGTGCCCACAGCA ATTGAGTTATATGATCTTCAGGACAGGCTTGGGCTCAGCCAACCCAGCAAGGTTGTAGATTGGTTGCTTGAAGCCTCCAA AACTGACATTGATAAGCTTCCACCACTTCAAATCCCTAACTGCAGCTTTTCTCAATTTCATCATCAAGATCAATATTCAG GTAATGATAGGCTTTCTCTTGGAGTTGGAGGCTTGTTCTATGATGGTACTAGTGCTTCCAGTCAAAGCCTCATGGCAAAG TCAAGGTATAATTGGGATGTTGATTTAGTGTCAAGGCTAAAGGGTAAGGAAGATGAAAGTGAGAAAGGTAAGTGCTTGAT GAAAGAAACTCAAGACTCAGCTCAGAAGCTCTTTCCTATTGGGATTAATTATAACTCTTCTTCTTCTTTACCTGGTTTTC TAAACAATGCCATGACATATAATATTAACTCCTTCCAATCAGAGCCTTCTTCAAGTCTATCTTTATCACAATTTGGAAGC CATGGAGTGTTGTTTCCTTACCTGCAGCCAGATTCTAATTCCATGTTGCAATATCCAAGCAACAACAATGGCAGTGTTGT GCCCTTCTCATCCTCTTTGTCTGCTTCACAGTTACTTTTCTGTCCTTCTTCTTCTGCTACTACACCAACATCACTTTTTG GCAATCCGCATGCTCCACTTATGACAAACTCATCAGCGGAAAGTAGTGATCCAAGACAATACAATTCCAACCATGTGCAC ACCTTGAGCTCAGGTTCCTCACTCATGCCTCATCCTTTCATGCCATCTCTTCACCCATTCAGCAATTCACCTTTGAGTCG ACGCCTTCCAACGCCATTTAGTTCCAAGCTTCTTGATTCAGATAATAACTAA
Protein sequence (LotjaGi4g1v0255700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTENSSKGYDQMKQEGTNEVKTERLISSNKALSTSRQWTAFRNPRIVRVSRALGGKDRHSKVCTVRGLRDRRIRLSVPTA IELYDLQDRLGLSQPSKVVDWLLEASKTDIDKLPPLQIPNCSFSQFHHQDQYSGNDRLSLGVGGLFYDGTSASSQSLMAK SRYNWDVDLVSRLKGKEDESEKGKCLMKETQDSAQKLFPIGINYNSSSSLPGFLNNAMTYNINSFQSEPSSSLSLSQFGS HGVLFPYLQPDSNSMLQYPSNNNGSVVPFSSSLSASQLLFCPSSSATTPTSLFGNPHAPLMTNSSAESSDPRQYNSNHVH TLSSGSSLMPHPFMPSLHPFSNSPLSRRLPTPFSSKLLDSDNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 357 | 357 | 5.5E-94 | – | |
MobiDBLite | 1 | 23 | 23 | - | – | |
PANTHER | 1 | 357 | 357 | 5.5E-94 | ||
Pfam | 55 | 156 | 102 | 1.8E-26 | ||
ProSiteProfiles | 55 | 113 | 59 | 30.369 | ||
MobiDBLite | 292 | 325 | 34 | - | – | |
MobiDBLite | 344 | 363 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi4g1v0255700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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