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LotjaGi4g1v0258700.1

Overview

Field Value
Gene ID LotjaGi4g1v0258700
Transcript ID LotjaGi4g1v0258700.1
Lotus japonicus genome version Gifu v1.2
Description F-box protein PP2; TAIR: AT1G80110.1 phloem protein 2-B11; Swiss-Prot: sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12; TrEMBL-Plants: tr|A0A0B2PZN8|A0A0B2PZN8_GLYSO F-box protein PP2-B10; Found in the gene: LotjaGi4g1v0258700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:61411830..61413319) extracted from Lotus japonicus Gifu genome v1.2.

GCAATGCACAACAATTACCAAAGTTGGGTAAGAAGGAAAGAAAAAAGAGAGTAAGATATGGAGTTGCCGGATGAATGCAT CGCTGACATACTGTGTCGCACTACTCCATTGGATGTCGCCAGGATCTCCGTCGTTTCTAAGAATTTCTGCTCTGTCATTG ATTCTGACACTATTTGGGATCATTTTCTCCCTTCCGATTATCGTTCCATCATTTCCCAGTCTTTTTCCATGGACAGCGTT CCTTCAAAGAAAGCCCTTTATCTCGCTTTCTCAGATCACCCTATCATCATCGATCAGGGGAAAAAGGTAAATACTCTCAT CAATCTAATATGATCATTTCTTAGATTAGGGCTTTATAGATTATTAATTACCCTTTGTTTGTTTTCTAATTGTTGAAATG CAGAGCTTTCAATTGGACAGGAAGAGTGGGAAGAAATGTTACATGCTTTCTGCCAGAGCTCTCAACATTTCTAACAGTGA TGATGAACGTTACTGTCGTTGGGTTACCATTCCAGAGTCTAGGTCAGATCTTCAATATTTAATTTTCTTCATTTTATTCT AGTTTTTGTGGATTTCATATTTTTATTCTATTAATTAATGATCAGACTTGTCAAACAAAAGTCACGATGTTAAATAATCT CATCTTTAGTGGAATAATAATAAATCTATAAAATTTAAAGTAAAAGATCGATGAAGTTTATTTTCAACTCATTTGTTTTA AGCATATAGTCTACTTATGATAAAATTATTTAAATTTTGAGTAAGGTACATTGTCATTTAATTACGAGTTATATTGTGAA TGTTTGTCTTTTTGTACCACATGTCTTTCTTGTACATATATTCCTTATGTAAAAATGTAGCTAACCTCTGTATTGAACAG GTTCGAAGAAGTTGCCATGCTTAAAGATGCATTACAGTTTTATATATCCGGGACGATAAATACTATTGATTTATCCTCAA ACACTCAATATGCAGTTTTTCTTGTTTTTAAGTTGATCACCACTCATGGCTTTTACTACGATCCCGTGTTGTTATTGATG CGCATTTTTGGAGGCCCTATATGTACTAAGGGTGCTTGTTTGGACATGAGGTTAGAAGCGATGTCTACATACAATATGCC ACAATATCCAAATATGAGAAGTGATGGTTTGTTGGAGATTGAGATGGGAGAGTTCTTCAGTTCAGGCCCAAAAGATGGTG AAGTTGAGATGGGTGTTATGATTTTAAAGAGTGTTTCATGGAGGGGAAATTTCTATCTTGAAGGAATAGAAGTTAGGCCT AAAGTATCTTGTCCCATAAGAAATATTAGACAGGCCTAGCAAATATGATAAAGGCATTTCAACTTTTGGGGTAGAAAATA AACATATTTAGCATGGTTCCCAAATAAATGTCTTTCATTTCTTAGTTTTTGACAAAATGAACTTATTATGTGCCTGTTTG TTCTTTATTTTATTTGCTTGTTTAATGAGTCAATCTGAATTTGAAAGCAC 

CDS sequence (LotjaGi4g1v0258700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTGCCGGATGAATGCATCGCTGACATACTGTGTCGCACTACTCCATTGGATGTCGCCAGGATCTCCGTCGTTTC TAAGAATTTCTGCTCTGTCATTGATTCTGACACTATTTGGGATCATTTTCTCCCTTCCGATTATCGTTCCATCATTTCCC AGTCTTTTTCCATGGACAGCGTTCCTTCAAAGAAAGCCCTTTATCTCGCTTTCTCAGATCACCCTATCATCATCGATCAG GGGAAAAAGAGCTTTCAATTGGACAGGAAGAGTGGGAAGAAATGTTACATGCTTTCTGCCAGAGCTCTCAACATTTCTAA CAGTGATGATGAACGTTACTGTCGTTGGGTTACCATTCCAGAGTCTAGGTTCGAAGAAGTTGCCATGCTTAAAGATGCAT TACAGTTTTATATATCCGGGACGATAAATACTATTGATTTATCCTCAAACACTCAATATGCAGTTTTTCTTGTTTTTAAG TTGATCACCACTCATGGCTTTTACTACGATCCCGTGTTGTTATTGATGCGCATTTTTGGAGGCCCTATATGTACTAAGGG TGCTTGTTTGGACATGAGGTTAGAAGCGATGTCTACATACAATATGCCACAATATCCAAATATGAGAAGTGATGGTTTGT TGGAGATTGAGATGGGAGAGTTCTTCAGTTCAGGCCCAAAAGATGGTGAAGTTGAGATGGGTGTTATGATTTTAAAGAGT GTTTCATGGAGGGGAAATTTCTATCTTGAAGGAATAGAAGTTAGGCCTAAAGTATCTTGTCCCATAAGAAATATTAGACA GGCCTAG 

Protein sequence (LotjaGi4g1v0258700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELPDECIADILCRTTPLDVARISVVSKNFCSVIDSDTIWDHFLPSDYRSIISQSFSMDSVPSKKALYLAFSDHPIIIDQ GKKSFQLDRKSGKKCYMLSARALNISNSDDERYCRWVTIPESRFEEVAMLKDALQFYISGTINTIDLSSNTQYAVFLVFK LITTHGFYYDPVLLLMRIFGGPICTKGACLDMRLEAMSTYNMPQYPNMRSDGLLEIEMGEFFSSGPKDGEVEMGVMILKS VSWRGNFYLEGIEVRPKVSCPIRNIRQA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 101 101 2.9E-5
ProSiteProfiles 1 43 43 11.855
PANTHER 2 256 255 4.6E-93
PANTHER 2 256 255 4.6E-93
Pfam 2 43 42 2.9E-7
SMART 3 43 41 7.5E-6
SUPERFAMILY 3 100 98 3.79E-12
Pfam 93 256 164 8.9E-38

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0258700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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