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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0260500 |
| Transcript ID | LotjaGi4g1v0260500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT1G18520.1 tetraspanin11; Swiss-Prot: sp|Q9LPR6|TET11_ARATH Tetraspanin-11; TrEMBL-Plants: tr|A0A0L9TSJ3|A0A0L9TSJ3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0260500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:61820976..61822764) extracted from Lotus japonicus Gifu genome v1.2.
CACAAACATTCAAACCCCACGCCAACCGTTTCCATTCCCTCCCTCATGCACCTATAAAACACTTCCATTCCCAACTCACC ACCACACACACACCAAATACGTGAAGGCAGCGATCATGTTCCGCACAAGCAACACCGTCGTCGGCTTCCTCAACATTCTC TCCCTCCTCCTCGGCCTCACCGCCGTCGTAACCGCCGCCTACATCCACCAGCACGGCGGATCCGACTGCCAGAAAGTCCT CCAATACCCTCTCCTCATCGGCGGCGTCTTCGTTGTCCTCGTCTCCACCCTCGGCATCGCGGGATCACTCTACCGCATCA ACACCGCGCTCTACGCTTACCTCGTGGTGACTTTCTTGGTGGTGGTTGGGCTCGCCTTCTTCACCGTCTTCGCGCTGTTT GTCACCAACAGGAAGGTTGGTCAGCAGGTTTCCAACAAGGGATATGGTGAGTACAGAGTCACCGATTTCTCCCACTGGCT GCAGCGGTATGTTGTCAATGATAAGAACTGGGATGAGGTTAAGAGTTGCCTCGTCGACGCACATGTTTGCCAGAACCTCG CCGTTAACGGTGGCCGGAACAATGACTCTCTCATTTTCAAACACTTGTCCACCACACAGGTTCATCACTTCCTCAATTTG ATATAACAAGTACTTGATTAGTATAAAATGAAATTTTGTTAATTACTAATATCATTCATGCACCATATTCATTTTGTTAA CTAAGTGATTCTACTGAATTTGTGTAACAATCAGTGTTGTTAATTGCCATGGCAAAAAGCCAAAAAACTGCCATGAGAAA CCGCCATGGTGGCGGCGCCATCGTGGATATTTGATAAAATTGGTCACAACATTAAACAATTTTTTAGTCATTAAGAGGAA TTTGGCCATTTAATTTAATTTTTTGGAGAGAAATTTAGGGTTACGCGCGGTACAAAATTAGAGTTAATTGATCATGTTGA AAAAAAAATCAAATTCAGATTTTGATGATTTCAATAGAAGCTGTACTGAACACTTTATCTGTTTTTTTTTTCTTAAATTT GACAGTTTTTTATTTTCCCTGAATAAAATTTTGAAATGTGAGACAATAACTACACATGCTAGATTTTTATATCTTAAATT GCACTCCACATTCATAATTGTTGTCCTAATGTAAAAGGTTTTGAAGTTATTGCCAATTTCGCAATGCAATTACCCCAATC GTAATTTAAAACTTGTATGATTTTGTTTTGTTTGGGAATTTTTTAGTCTGGATGCTGCAAGCCACCGGTGTACTGTGGAT TCAGGATGAAGAATGCAACGTTCTGGGAGGTGCCAAAGAATGGTCCAGCAGCGAACAATTCAGATTGCAAGACATGGGAC AACAAGCAGGACAAGCTGTGCTATGATTGCAATGCATGCAAAGGAGGGGTTTTGGCCAACATCAGGAACCAGTGGAGACA TTTAACCATATTCAATGGCCTTGTGCTTGCACTCGTCACCACCATTTATGTTCTGGGTTGCTATGCCATCAAGAACAACC GATGGGACTTGCGCCGCGAGCACCAAACTCCCGCTGCAGGACACCCTTGATAGTTGAAGAAGGCATATATGTATCTTTAG GCTCTGTTAAGTTATTTTGTACTGTTTAATTTGGGGACTAGTTTGTTTTCATTTTGTTAGGTACTGTTGTTCTGTTTCAA TTATGGTCATGTTTAGGCTTCAAGTGTTTTTATATATTGGACCTGTATGTGCTTCTGTGTGTTTGATTTGATATGCAAGT TCGATTTCTCTAATCTATTTCAATCTTTG
CDS sequence (LotjaGi4g1v0260500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCGCACAAGCAACACCGTCGTCGGCTTCCTCAACATTCTCTCCCTCCTCCTCGGCCTCACCGCCGTCGTAACCGC CGCCTACATCCACCAGCACGGCGGATCCGACTGCCAGAAAGTCCTCCAATACCCTCTCCTCATCGGCGGCGTCTTCGTTG TCCTCGTCTCCACCCTCGGCATCGCGGGATCACTCTACCGCATCAACACCGCGCTCTACGCTTACCTCGTGGTGACTTTC TTGGTGGTGGTTGGGCTCGCCTTCTTCACCGTCTTCGCGCTGTTTGTCACCAACAGGAAGGTTGGTCAGCAGGTTTCCAA CAAGGGATATGGTGAGTACAGAGTCACCGATTTCTCCCACTGGCTGCAGCGGTATGTTGTCAATGATAAGAACTGGGATG AGGTTAAGAGTTGCCTCGTCGACGCACATGTTTGCCAGAACCTCGCCGTTAACGGTGGCCGGAACAATGACTCTCTCATT TTCAAACACTTGTCCACCACACAGTCTGGATGCTGCAAGCCACCGGTGTACTGTGGATTCAGGATGAAGAATGCAACGTT CTGGGAGGTGCCAAAGAATGGTCCAGCAGCGAACAATTCAGATTGCAAGACATGGGACAACAAGCAGGACAAGCTGTGCT ATGATTGCAATGCATGCAAAGGAGGGGTTTTGGCCAACATCAGGAACCAGTGGAGACATTTAACCATATTCAATGGCCTT GTGCTTGCACTCGTCACCACCATTTATGTTCTGGGTTGCTATGCCATCAAGAACAACCGATGGGACTTGCGCCGCGAGCA CCAAACTCCCGCTGCAGGACACCCTTGA
Protein sequence (LotjaGi4g1v0260500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRTSNTVVGFLNILSLLLGLTAVVTAAYIHQHGGSDCQKVLQYPLLIGGVFVVLVSTLGIAGSLYRINTALYAYLVVTF LVVVGLAFFTVFALFVTNRKVGQQVSNKGYGEYRVTDFSHWLQRYVVNDKNWDEVKSCLVDAHVCQNLAVNGGRNNDSLI FKHLSTTQSGCCKPPVYCGFRMKNATFWEVPKNGPAANNSDCKTWDNKQDKLCYDCNACKGGVLANIRNQWRHLTIFNGL VLALVTTIYVLGCYAIKNNRWDLRREHQTPAAGHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 260 | 260 | 2.2E-110 | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 260 | 260 | 2.2E-110 | – | |
| Pfam | 6 | 250 | 245 | 1.1E-20 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| Phobius | 31 | 41 | 11 | - | – | |
| Phobius | 42 | 66 | 25 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 67 | 71 | 5 | - | – | |
| Phobius | 72 | 96 | 25 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 97 | 235 | 139 | - | – | |
| TMHMM | 234 | 256 | 23 | - | – | |
| Phobius | 236 | 257 | 22 | - | – | |
| Phobius | 258 | 275 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0260500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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