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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0260600 |
| Transcript ID | LotjaGi4g1v0260600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein chaperone-like protein of por1, chloroplastic; TAIR: AT5G23040.1 cell growth defect factor-like protein (DUF3353); Swiss-Prot: sp|Q9FN50|CPP1_ARATH Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic; TrEMBL-Plants: tr|A0A151SPN5|A0A151SPN5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0260600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:61848791..61853425) extracted from Lotus japonicus Gifu genome v1.2.
TGACACTTGAGAGTCTTCAATCCTTATAAAATAAAAACATTTTGGTTTTAGTCCCTTTGTTAGCCAAGTCCAATGTTTTC ATAACGAAATTATAAAAATAAGAAGGCTTTGTAGTCTGCGCACGGGTGCGTACCCTATCAGGAAGTGGGTGACAAATACA GAAGCCTATCGATATTCCTCTTCCACTTGCTCCGCCCTTCAACCGCGCCATTCAACTAGGGCTCCGCCTACCCTCCCTTA ATCATGGTCGCTCTTTCGCTTTCAGCTCCCAATTTCGCCACCGCGTACCTCGCCAAAAAACTGTACCTCTCTCTCTTCCT CTCCGTTTCTCTATGCGTGTTTTTCCTATCAAAAATTGAAAATCTGGCTTCAATTTTCATTTTCACCTTCATCTTTAATG GTTTACCCTCCTCAATTTTGGTTTCACCAGGCCACTCCGGGAAAATACGAAGAGGCTGCCAAATGTTTCGTTTCGCACGA GATGCGCGGTCGACTCGCCGTATGAAGGTATCATCATTCAATTCATGTTGGTATGTGAATTTGTGCTTGGATGAAAACCC TATAAAGACTAGTTAATCATTGGGCATAACCTTATCCTATCATATGTATGAACAATTTGGACAATATTGGTAAAATTTGT TATCTAAATGACCAATTGATTGGGTATTAGCTTTCACAGAGTGCCTATTAATACTGTAATCTCCCTCCAAAGGGTTCTTG TATGCTACTGTTATTTATTATAGTTCCTTTGCTTCCTTACTTTGATTGAATGAAGGGTTTGCAGTTAGTAACAATTGAGT GTATGAGTTTAGAATTCTAGGCTTTTGTTTAAAATGTATTGGTCTTTCATTTTGCACTAGTTGCAAGTAAAAGGGTGAAG GTCTATTATGGGCATCTGCTGCCACTTTGGTATATGTGGGTAAAGGTGGAAATGATTTGGGTTATTAATTAGCTACTTGG GTCTAGCACGCAAAAGCCAGTTTTTTTTTTTATAAAATCCAACCCAAGCCTTGAGAGCTGGACTTGATTCTAAGTCAGAG CTTTATATGCTTCACCTATTTTTCCCCAAAATATTTCATCATTAACATGGTCATAAAGTGGTGAAACTTCTTTCTTTGTA ATATTTGTTGAGGATGCAAGATACAACCGCCGTGCCTTATAGCATAGTAGTCAATCCCGGATAGCGGCGCGTAGCGGCCG GCCCCAAAAGTGGGATAGCGTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTTTTTATGTAATTTTATATCATT AATAGTTTAATACTATATACATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCATAACATTCATAATAGAAATA AAAATCATAAGTCTTGAACAATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGAAGTCGAATTTGCAAATCTGA ATGAAGAATGAAGCTTAATTGTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAACATGCCCATAAAAAGGTTCCC CAACGATTTAAAACGAAGGGGCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTATTTCCCGCTATTGGCCGCGAT CTGCCGCTATTTTGGCCGCTATTCGCGCCGCTACAGCCGCTATTGTGAAGTTGGCCGCTATTTCATCTCAATAGCGGCAG GGAGCCGCTCCGCTCCGCTACGCCGCTATAGCGCCGCTATTTCCCGCTATTGACTACTATGCCTTATAGTTTAGGTATGG TTGATTTCGTATTTCCATATGGTCAGTATCTGATTATATAATGTGACACCGGTCCTTGTGATCTAAAAGTTCATGTTTAG TGTGTCTTTGAGACCTATTTATGCTGTATATCTTGGAAATAAGTATACTGTTTCCCTACTATACGTCATAACCTTTTTAT TAGTTTATCTTATTTTAGCTTCACTTGGTTTTTCAAGCTTGATTTTCTACCCCATGCTCAAGCTTCTGATCTTTTGGCTC AAGTCAAGCTCCATTTTCTAGATAAGTAAAGAAAGACAAAGCCCTTAGTAAGCCTTGCTTGGCTTTGGTTGGACTTGGGA CTGGGGAATTTGAGATGGATTGTATTCCACTGTTCCTACATAAAGGACCTCAATGATGAGTTATCCCGGGGTCTTCCCCT TCTGATGTAAGAGTTGTCCCTCAATCTTGGGCTTGGGCATCTAATTTATGGTTAAGTAGATTGACAGCATTCACATTCCT TTCTTGAGAATAGTATTGGGAACCCAGTGTCCCAGTGACAAAACTTCAACTTCAGTATTTGATCCAATGTACGACATTGT GTTTACTAGTTTGATTTCCTTTTTTAGTAGCTCGTGGGGTAGGCTTAAGTAGATTGTCAGCATTCATATTCCTTTCTTAG GAGGTAATACTGGGAACTCAGTGACAAAACTTCAACTTCAGTATTTGATCCAATGTACAACATTGTGTTTACTAGTTTTA TTTCCTTTTCTAGTAGCTCGTTGAGTGGTTTCAAAAATCTTTAGCTTAAACATGATTTTTGGATAATTGTCTGATAGCTG ATTGGGATTCATTTTGAATCATATAAGTCTGCATTTCAGCTACATAGCTGCTTTCCTCTGTCTTCTATTTTCCTCCTTAT GGATTAAATAATTTGATATATTATTTTTATATACTTCTTCTCCACAGGTAATGTCCAAAAATTCCCTCGAGTCAATGTTT GGGATCCTTACCGACGACTTGGTGTTGGCCGTGATGCTTCTGAAGAAGAAATTTGGGGTTCAAGAAATTTTCTGTTGCAA CAATATGCTGGACATGAGAGGAGTGAAGAATCAATAGAAGCTGCCTTTGAAAAAATATTGACGGCTAGTTTTCTACAGAG GAAGAAAACAAAAATTAATTTGAAAAGCAGGTTGAAAAAGAAAGTAGAGGAGTCTCCACCATGGGTCAAGAGCTTACTAA ACTTTGTTGAACTTCCACCAACTGAAATTATCCTCCGAAGATTGTTTCTTTTTGCCTTCATGGGTGCTTGGAGCATTATG AATTCTGCTGAAACTGGACCTGCCTTTCAGGTTTGCTTTGATTTTCTTATATTAGTTATTAGTGTGTGGTTTACAATCAA ATGCACAATTCTTTAAAAAACAGAGATGTCTTTATTTTTCAAGTATAGAGTTAGGAAATCACAACTATGACATAAGGAAG TGTTACACCCAAAATTTTAAAGAAAGAAAACAGAATTGTATGTTCATCTAGTTCTTACCTTCTCAAGCCCCCGGTTTATT TTATCAATACTACATGGTTTAGTCAACTGCCAGTCTCTGGTTAGTGGTTACTCTTTCTTCCGAGGCTGTAGGATGCGGTA TACTAATGTTATGCTTTGATAGTGAGATTTTAGTGACTGTTTGCTGTCTTTGGCTATTGTTGAAGCCTGGGCTGATCATG TGTTGTGACTAGTGATTACCAGACTTTCAGGGTTTTTCACTTTGATCTTCAAACATACTTTCAATTTCGATTTGAAGTAG TGCCTCACATTTTTAAGGCTTTCAGACATTTGGACAAAATTTAATACATACCTACTTATCCTTTCATGTGTTCGCCAGTG TATGAAGGCATATTAAGGTTAATATGTTATAAGTTTTAACTATTTTATCCAAGGTTCATGTATTTGGAGTTTACATCAGT GGATAGTTGTTTATGTTCTGTCTCTCTCTGTCTGCCTCTCCCCTTCCTGCTTCCACCATGTGCATGAATACTTGTATGTT GACAGTACCCATTCTTTTGCTACAGGTGGCTATCTCTTTGGCGGCTTGCATATATTTCCTTAACGAAAAGACGAAGAGCT TGTCTAGAGCGTTCATTATTGGGTAAGTGGTAAAACTTGCTTCAACTTATGATTTTCCTTTGATTTCTATTTATTCATCA TCTGCTTTGTTTATTGCAAAATCATAGGTTTGGAGCTCTTGTGGCTGGATGGGTCGGCGGTTCTGTGCTGGTACCCAGTA TTCCATCTATGTTGCTGCGCCCTGAATGGACACTTGAACTCTTAACATCATTAGTAGTTTATGTCTTCTTGTTCATTGCT TGTACTTTCCTCAAGTGAAGTGGCAACTATTTTTCCATAGTTTCAGTCAGTATCCTGTACTCTTAATTGAGTTTATAGGT GGTCAAACTTACCATATCTTGAGTGAGCCAAGATGTCTACTGCTGTGCTTGCTGCTAACCCATCCTTGTGACCAACTTAC TTTGATCTTGATTCAGGTCGAGATTAAGTTATCTTGTTTTTGGATCAAAGGAGGGAAGATATTTTAATTTTTACTATATA TGGTTATTAGGAGGGGAAATAATTCTCTCCTTGTTTTGTTAATTAGGGAAGGAGATAAATTTAAAATAAATTTACTTTTA TGTTCATACATTGAAAACACAATTTCGAGGTTCAAACTATGAGTAAATCATACTGGTTACAAGGTTATCTCGATCCCCTT TAAGTGTCTCATTTATGAAGGTGAGCAAAAATTGATTAGAGTGAATGGTAGAAAGAGTAATTTCAACCTTCATGTGGTAT CTGGAAAGGTGATCCTATCTGACCTTATTTTGTGTAATGTGTAAATCTTGAGAAGATTAGACTTAAGAATGTGTG
CDS sequence (LotjaGi4g1v0260600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCGCTCTTTCGCTTTCAGCTCCCAATTTCGCCACCGCGTACCTCGCCAAAAAACTGCCACTCCGGGAAAATACGAA GAGGCTGCCAAATGTTTCGTTTCGCACGAGATGCGCGGTCGACTCGCCGTATGAAGGTAATGTCCAAAAATTCCCTCGAG TCAATGTTTGGGATCCTTACCGACGACTTGGTGTTGGCCGTGATGCTTCTGAAGAAGAAATTTGGGGTTCAAGAAATTTT CTGTTGCAACAATATGCTGGACATGAGAGGAGTGAAGAATCAATAGAAGCTGCCTTTGAAAAAATATTGACGGCTAGTTT TCTACAGAGGAAGAAAACAAAAATTAATTTGAAAAGCAGGTTGAAAAAGAAAGTAGAGGAGTCTCCACCATGGGTCAAGA GCTTACTAAACTTTGTTGAACTTCCACCAACTGAAATTATCCTCCGAAGATTGTTTCTTTTTGCCTTCATGGGTGCTTGG AGCATTATGAATTCTGCTGAAACTGGACCTGCCTTTCAGGTGGCTATCTCTTTGGCGGCTTGCATATATTTCCTTAACGA AAAGACGAAGAGCTTGTCTAGAGCGTTCATTATTGGGTTTGGAGCTCTTGTGGCTGGATGGGTCGGCGGTTCTGTGCTGG TACCCAGTATTCCATCTATGTTGCTGCGCCCTGAATGGACACTTGAACTCTTAACATCATTAGTAGTTTATGTCTTCTTG TTCATTGCTTGTACTTTCCTCAAGTGA
Protein sequence (LotjaGi4g1v0260600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVALSLSAPNFATAYLAKKLPLRENTKRLPNVSFRTRCAVDSPYEGNVQKFPRVNVWDPYRRLGVGRDASEEEIWGSRNF LLQQYAGHERSEESIEAAFEKILTASFLQRKKTKINLKSRLKKKVEESPPWVKSLLNFVELPPTEIILRRLFLFAFMGAW SIMNSAETGPAFQVAISLAACIYFLNEKTKSLSRAFIIGFGALVAGWVGGSVLVPSIPSMLLRPEWTLELLTSLVVYVFL FIACTFLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 145 | 145 | - | – | |
| PANTHER | 32 | 248 | 217 | 1.2E-110 | ||
| PANTHER | 32 | 248 | 217 | 1.2E-110 | – | |
| Pfam | 67 | 247 | 181 | 1.5E-56 | ||
| Phobius | 146 | 163 | 18 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 164 | 168 | 5 | - | – | |
| Phobius | 169 | 186 | 18 | - | – | |
| Phobius | 187 | 194 | 8 | - | – | |
| Phobius | 195 | 214 | 20 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 215 | 225 | 11 | - | – | |
| Phobius | 226 | 247 | 22 | - | – | |
| TMHMM | 228 | 247 | 20 | - | – | |
| Phobius | 248 | 248 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0260600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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