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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0260900 |
| Transcript ID | LotjaGi4g1v0260900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G19790.1 related to AP2 11; Swiss-Prot: sp|Q6J9S1|RA211_ARATH Ethylene-responsive transcription factor RAP2-11; TrEMBL-Plants: tr|C6TGV6|C6TGV6_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0260900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:61869458..61870762) extracted from Lotus japonicus Gifu genome v1.2.
TAATACCTTAAGAAGCAAACAAACCCAAATCTGACAAAACAGCATACTAGCTATTACCTCATCATCAACCCTTATTGCTA CATCAAAGACCTTTGTTAGTATTAGTAACCACTAATCATCTCATGTTCCTCCATGCTAAAATCCAACCCCTTTCTCCTAC TCTCATGGAAAACAAAGACAAATCAACATCTCCACCCCAATCTGAAAATCAAAACAAGAATCTCCCTTTGATGCCTAATG AAATAGATAGATCCTATGAGAATAGAGAGAAGAAGAAGATTCCCCAAACAGAAAACAAGTGTCAGCAGAAAAAGTTTCTA GGGGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAAATCAAAGACTCCTCATCACAGAAGCTAAGGGTGTGGTTAGG AACCTTTGACAGAGCAGTGGAAGCTGCTCTGGCTTATGACTCTGCAGCAAGGCTTCTCAGAGGAAAAAATGCCAAAACAA ACTTTCCAAACACTCATCATGAGGAAGATTACTACTGCAGCAGCATTTTGGGGAAGAATCCAAGGGCTTACCAGCTTCTT CATCAGCATGCAGTCATGAAGAAGAACCACCATGCACTAATTTCCTCATCTGTTTTTTCTTCCATCCCTTGGAAAAATCA GATCATGATGAGAGGAGAAGAACATGATGCACTTGTTGAGGAAACTATTGTTTGCTCTGTTGCCTCTGTTAATCCTGAAG AAGGGTCTACAGGGAGTAGTGGAATTTCATTTGGAAGTTCAAAGGTTTACTCTTCTGTTGTTGTAGCTCCTTCTTTTAGT GCCTCGCAGTGTCAAACATGATAAGCTTAACTGTTAACTATGTCTTTTGTATTGTATTCCCATTCCTATTTTGCCTCGGG AAATCAAAGTTGTTTGCAAGACTGAAAAACTGATATCAAACTCCAGTTATGTAATGATATCTGCTACATGCATGCTTCCA CTATATGATGCATGACATGATCTGCCCTCTATAGTGTCTATTGATAGGATGTTTGCATCAACTTTTTTTAAAAAAATCAA ATTTAAAACTCAAAAACAACTCATATGAGCTTTAGAATCGATTTTAAAAGAGTTATCAAATATGAAGCGGAAAATTTTTA TACTTTCAATTGTTTGATCAAGTACTATCTTGTGTTTGTGTCTGTCTTTGAATCCAGGGACGGATCTATGACGGATCTAT GGTAGGAGGCATGAGTGCAGATGCCCTCACTTAATTTTGAAAATAATTATTAGAAAAAGTATGTGATTTTAGATGACTCT TTTGGTAAAAAATGCATGTTCTCAC
CDS sequence (LotjaGi4g1v0260900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTCCATGCTAAAATCCAACCCCTTTCTCCTACTCTCATGGAAAACAAAGACAAATCAACATCTCCACCCCAATC TGAAAATCAAAACAAGAATCTCCCTTTGATGCCTAATGAAATAGATAGATCCTATGAGAATAGAGAGAAGAAGAAGATTC CCCAAACAGAAAACAAGTGTCAGCAGAAAAAGTTTCTAGGGGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAAATC AAAGACTCCTCATCACAGAAGCTAAGGGTGTGGTTAGGAACCTTTGACAGAGCAGTGGAAGCTGCTCTGGCTTATGACTC TGCAGCAAGGCTTCTCAGAGGAAAAAATGCCAAAACAAACTTTCCAAACACTCATCATGAGGAAGATTACTACTGCAGCA GCATTTTGGGGAAGAATCCAAGGGCTTACCAGCTTCTTCATCAGCATGCAGTCATGAAGAAGAACCACCATGCACTAATT TCCTCATCTGTTTTTTCTTCCATCCCTTGGAAAAATCAGATCATGATGAGAGGAGAAGAACATGATGCACTTGTTGAGGA AACTATTGTTTGCTCTGTTGCCTCTGTTAATCCTGAAGAAGGGTCTACAGGGAGTAGTGGAATTTCATTTGGAAGTTCAA AGGTTTACTCTTCTGTTGTTGTAGCTCCTTCTTTTAGTGCCTCGCAGTGTCAAACATGA
Protein sequence (LotjaGi4g1v0260900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLHAKIQPLSPTLMENKDKSTSPPQSENQNKNLPLMPNEIDRSYENREKKKIPQTENKCQQKKFLGVRQRPSGRWIAEI KDSSSQKLRVWLGTFDRAVEAALAYDSAARLLRGKNAKTNFPNTHHEEDYYCSSILGKNPRAYQLLHQHAVMKKNHHALI SSSVFSSIPWKNQIMMRGEEHDALVEETIVCSVASVNPEEGSTGSSGISFGSSKVYSSVVVAPSFSASQCQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 58 | 58 | - | – | |
| MobiDBLite | 14 | 37 | 24 | - | – | |
| PANTHER | 16 | 229 | 214 | 2.3E-76 | – | |
| PANTHER | 16 | 229 | 214 | 2.3E-76 | – | |
| MobiDBLite | 42 | 58 | 17 | - | – | |
| CDD | 63 | 124 | 62 | 2.11656E-28 | ||
| Gene3D | 63 | 124 | 62 | 1.2E-25 | ||
| SMART | 64 | 128 | 65 | 3.1E-31 | ||
| ProSiteProfiles | 64 | 122 | 59 | 19.269 | ||
| SUPERFAMILY | 64 | 123 | 60 | 1.44E-18 | ||
| PRINTS | 65 | 76 | 12 | 6.9E-9 | ||
| Pfam | 65 | 114 | 50 | 5.2E-9 | ||
| PRINTS | 104 | 124 | 21 | 6.9E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0260900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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